Clone BO08310 Report

Search the DGRC for BO08310

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:10
Vector:pDNR-Dual
Associated Gene/Transcriptdesat1-RA
Protein status:BO08310.pep: validated full length
Sequenced Size:1183

Clone Sequence Records

BO08310.3prime Sequence

915 bp (784 high quality bases) assembled on 2006-01-06

> BO08310.3prime
ATGGTCTAGAAAGCTTGCTTCGCTTTTTTTGTGTGTAATGACAGCATCCT
CAATCTCCTCCTTGGGCTGGTCCACATCGCCCCATCCCCACGTGGCGTGA
GTGCCGTCACCGGTACGCTTCACACGCTTCTTTATGATATCCGTGGACAC
CGTCTTGAGGTCGTAGGCCCAGCCGATCTTGGCGAAGAAATCGATGAAGG
CGGTAGTGAAGTTTAGCGAGTATTTGCCAAACTCGGCCGTCTTGTAGTCC
CAGGGGAAGACGTGATGGTAGTTATGCCATCCCTCTCCAAAGGCCAAGAT
AGCCACGGAGATGTTCTCCGAAGGATTGATAAATTTGTCGTAGGGACGGC
CACCGAACTTGTGGGCAGCACTGTTCACCAGCCAGGTTACGTTCAGAATG
AAACACCAGCGGAACATGGTGGCCACAAACCAGGCGTTCATGAAGGATTC
ACCCCAGGCGTACATGGGCACCACGGTCGGGATGATGAAGCAAGCAATCG
GCATCAAAATCATGTAGTATTTCTTCTGGAACATGAGGATTGGATCGGCG
CGCAGATCGGATAGATCGACTCCCTTGCCCTTGGCTTTCACCTCCGGGTG
CTTCTTGCACAGCAGCCAGCCGACGTGCGAGAAGAAGAAACCACGCGTGG
CGTTGTGGGGATCGGCGTCAGTCTCCGAGTATTTGTGGTGGACGCGATGG
TCGCGAGCCCAATGGTAGGCGGCATCCTGGAAGGCAATCGTGTTGAAGAT
GACCAGAATCACTCGCAGGGGCCACTTGGCCTTGTAGGAGCGATGCGCCC
ACAGACGATGGGCACCGGCGGTAATGCCTAGGCCAGAAATGACGTATAGA
AAATAAGCTAAGATGCACGTCTGCCACTTGGCAGAAGTGACCATGAGGTA
GGCTCCGTAGAGGGC

BO08310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5887-PA 1152 desat1-RA 253..1149 915..19 4460 99.8 Minus
CG5887-PC 1152 desat1-RC 253..1149 915..19 4460 99.8 Minus
CG5887-PE 1152 desat1-RE 253..1149 915..19 4460 99.8 Minus
CG5887-PB 1152 desat1-RB 253..1149 915..19 4460 99.8 Minus
CG5887-PD 1152 desat1-RD 253..1149 915..19 4460 99.8 Minus
CG5925-PA 1086 desat2-RA 349..458 756..647 300 90.9 Minus
CG5925-PA 1086 desat2-RA 286..341 819..764 230 96.4 Minus
CG9743-PA 1263 CG9743-RA 970..1034 288..224 200 92.3 Minus
CG5925-PA 1086 desat2-RA 904..957 201..148 195 94.4 Minus
CG8630-PA 1227 CG8630-RA 859..903 285..241 150 93.3 Minus
CG9747-PA 1386 CG9747-RA 997..1040 285..242 145 93.1 Minus
CG9743-PA 1263 CG9743-RA 579..645 679..613 135 88 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:39:50
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 360..1256 915..19 4470 99.9 Minus
Desat1-RB 1978 CG5887-RB 404..1300 915..19 4470 99.9 Minus
Desat1-RE 1956 CG5887-RE 382..1278 915..19 4470 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:39:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 859..521 1695 100 Minus
3R 32079331 3R 12446623..12446938 334..19 1580 100 Minus
3R 32079331 3R 12446376..12446561 520..335 930 100 Minus
3R 32079331 3R 12436763..12437064 828..527 865 85.8 Minus
3R 32079331 3R 12437485..12437630 293..148 370 83.6 Minus
3L 28110227 3L 11023798..11024158 821..461 350 73.1 Minus
3R 32079331 3R 30196888..30197003 181..296 310 84.5 Plus
3R 32079331 3R 12445061..12445118 915..858 275 98.3 Minus
3R 32079331 3R 30186709..30186806 614..711 250 83.7 Plus
3R 32079331 3R 13282904..13283032 702..574 225 78.3 Minus
3R 32079331 3R 30197375..30197449 613..687 225 86.7 Plus
3R 32079331 3R 30186150..30186266 202..318 210 78.6 Plus
3R 32079331 3R 12437277..12437356 432..353 205 83.8 Minus
3R 32079331 3R 13283528..13283640 285..173 205 78.8 Minus
Blast to na_te.dros performed on 2015-02-13 12:39:48 has no hits.

BO08310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:37 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PB 253..1152 18..915 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:40 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PC 253..1152 18..915 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:48 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 382..1283 13..915 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:18:53 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 382..1283 13..915 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:18:53 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12445061..12445118 858..915 98 -> Minus
3R 12445978..12446314 521..857 100 -> Minus
3R 12446376..12446561 335..520 100 -> Minus
3R 12446623..12446943 13..334 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:48 Download gff for BO08310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8270783..8270840 858..915 98 -> Minus
arm_3R 8271700..8272036 521..857 100 -> Minus
arm_3R 8272098..8272283 335..520 100 -> Minus
arm_3R 8272345..8272665 13..334 99   Minus

BO08310.5prime Sequence

932 bp (791 high quality bases) assembled on 2006-01-06

> BO08310.5prime
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGGTGACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAA
TTTATCAATCCTTCGGAGAACATCTCCGTGGCTATCTTGGGCTTTGGAGA
GGGATGGCATACCTACCATCACGTCTTCCCCT

BO08310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG5887-PA 1152 desat1-RA 1..790 17..806 3950 100 Plus
CG5887-PC 1152 desat1-RC 1..790 17..806 3950 100 Plus
CG5887-PE 1152 desat1-RE 1..790 17..806 3950 100 Plus
CG5887-PB 1152 desat1-RB 1..790 17..806 3950 100 Plus
CG5887-PD 1152 desat1-RD 1..790 17..806 3950 100 Plus
CG5887-PA 1152 desat1-RA 794..916 810..932 565 98.3 Plus
CG5887-PC 1152 desat1-RC 794..916 810..932 565 98.3 Plus
CG5887-PE 1152 desat1-RE 794..916 810..932 565 98.3 Plus
CG5887-PB 1152 desat1-RB 794..916 810..932 565 98.3 Plus
CG5887-PD 1152 desat1-RD 794..916 810..932 565 98.3 Plus
CG5925-PA 1086 desat2-RA 349..458 428..537 300 90.9 Plus
CG5925-PA 1086 desat2-RA 286..341 365..420 230 96.4 Plus
CG9743-PA 1263 CG9743-RA 579..645 505..571 135 88 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:40:36
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 106..1023 15..932 4515 99.6 Plus
Desat1-RB 1978 CG5887-RB 150..1067 15..932 4515 99.6 Plus
Desat1-RE 1956 CG5887-RE 128..1045 15..932 4515 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:40:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 325..663 1695 100 Plus
3R 32079331 3R 12444807..12445118 15..326 1560 100 Plus
3R 32079331 3R 12446376..12446561 664..849 885 98.4 Plus
3R 32079331 3R 12436763..12437064 356..657 865 85.8 Plus
3R 32079331 3R 12446623..12446705 850..932 385 97.6 Plus
3L 28110227 3L 11023798..11024158 363..723 350 73.1 Plus
3R 32079331 3R 30186709..30186806 570..473 250 83.7 Minus
3R 32079331 3R 13282904..13283032 482..610 225 78.3 Plus
3R 32079331 3R 30197375..30197449 571..497 225 86.7 Minus
Blast to na_te.dros performed on 2015-02-13 12:40:35 has no hits.

BO08310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:38 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PB 1..916 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:42 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5887-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:53 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..1045 7..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:15 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 123..1045 7..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:15 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12444802..12445118 7..326 98 -> Plus
3R 12445978..12446314 327..663 100 -> Plus
3R 12446376..12446561 664..849 98 -> Plus
3R 12446623..12446705 850..932 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:53 Download gff for BO08310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8272098..8272283 664..849 98 -> Plus
arm_3R 8272345..8272427 850..932 97   Plus
arm_3R 8270524..8270840 7..326 98 -> Plus
arm_3R 8271700..8272036 327..663 100 -> Plus

BO08310.complete Sequence

1183 bp (1183 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631145

> BO08310.complete
GAAGTTATCAGTCGACATGCCGCCCAACGCCCAAGCCGGTGCCCAGTCCA
TCTCAGACTCACTGATCGCAGCAGCTAGTGCCGCCGCCGACGCGGGTCAG
AGCCCCACCAAGCTGCAGGAGGACTCCACCGGAGTGCTCTTCGAGTGCGA
TGTGGAAACCACCGACGGTGGTCTTGTCAAGGACATCACCGTGATGAAGA
AGGCCGAGAAGCGCCGCCTGAAGCTCGTCTGGCGCAACATCATCGCCTTC
GGTTACCTCCATCTGGCTGCCCTCTACGGAGCCTACCTCATGGTCACCTC
TGCCAAGTGGCAGACGTGCATCTTAGCTTATTTTCTATACGTCATTTCTG
GCCTAGGCATTACCGCCGGTGCCCATCGTCTGTGGGCGCATCGCTCCTAC
AAGGCCAAGTGGCCCCTGCGAGTGATTCTGGTCATCTTCAACACGATTGC
CTTCCAGGATGCCGCCTACCATTGGGCTCGCGACCATCGCGTCCACCACA
AATACTCGGAGACTGACGCCGATCCCCACAACGCCACGCGTGGTTTCTTC
TTCTCGCACGTCGGCTGGCTGCTGTGCAAGAAGCACCCGGAGGTGAAAGC
CAAGGGCAAGGGAGTCGATCTATCCGATCTGCGCGCCGATCCAATCCTCA
TGTTCCAGAAGAAATACTACATGATTTTGATGCCGATTGCTTGCTTCATC
ATCCCGACCGTGGTGCCCATGTACGCCTGGGGTGAATCCTTCATGAACGC
CTGGTTTGTGGCCACCATGTTCCGCTGGTGTTTCATTCTGAACGTAACCT
GGCTGGTGAACAGTGCTGCCCACAAGTTCGGTGGCCGTCCCTACGACAAA
TTTATCAATCCTTCGGAGAACATCTCCGTGGCTATCTTGGCCTTTGGAGA
GGGATGGCATAACTACCATCACGTCTTCCCCTGGGACTACAAGACGGCCG
AGTTTGGCAAATACTCGCTAAACTTCACTACCGCCTTCATCGATTTCTTC
GCCAAGATCGGCTGGGCCTACGACCTCAAGACGGTGTCCACGGATATCAT
AAAGAAGCGTGTGAAGCGTACCGGTGACGGCACTCACGCCACGTGGGGAT
GGGGCGATGTGGACCAGCCCAAGGAGGAGATTGAGGATGCTGTCATTACA
CACAAAAAAAGCGAAGCAAGCTTTCTAGACCAT

BO08310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:13
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1152 CG5887-PD 1..1149 17..1165 5745 100 Plus
Desat1-RB 1152 CG5887-PB 1..1149 17..1165 5745 100 Plus
Desat1-RE 1152 CG5887-PE 1..1149 17..1165 5745 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:14
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-RD 1934 CG5887-RD 106..1256 15..1165 5755 100 Plus
Desat1-RB 1978 CG5887-RB 150..1300 15..1165 5755 100 Plus
Desat1-RE 1956 CG5887-RE 128..1278 15..1165 5755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12445976..12446314 325..663 1695 100 Plus
3R 32079331 3R 12446623..12446938 850..1165 1580 100 Plus
3R 32079331 3R 12444807..12445118 15..326 1560 100 Plus
3R 32079331 3R 12446376..12446561 664..849 930 100 Plus
3R 32079331 3R 12436763..12437064 356..657 865 85.8 Plus
3R 32079331 3R 12437485..12437630 891..1036 370 83.6 Plus
3L 28110227 3L 11023798..11024158 363..723 350 73.1 Plus
3R 32079331 3R 30196888..30197003 1003..888 310 84.5 Minus
3R 32079331 3R 30186709..30186806 570..473 250 83.7 Minus
3R 32079331 3R 13282904..13283032 482..610 225 78.3 Plus
3R 32079331 3R 30197375..30197449 571..497 225 86.7 Minus
3R 32079331 3R 30186150..30186266 982..866 210 78.6 Minus
3R 32079331 3R 12437277..12437356 752..831 205 83.8 Plus
3R 32079331 3R 13283528..13283640 899..1011 205 78.8 Plus
Blast to na_te.dros performed on 2014-11-27 16:46:12 has no hits.

BO08310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:39 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 1..1152 17..1166 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:15 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..1283 7..1171 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:05 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 130..1278 17..1167 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:39 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
desat1-RE 123..1283 7..1171 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:27 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
Desat1-RE 130..1278 17..1167 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:27 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12444809..12445118 17..326 100 -> Plus
3R 12445978..12446314 327..663 100 -> Plus
3R 12446376..12446561 664..849 100 -> Plus
3R 12446623..12446938 850..1167 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:05 Download gff for BO08310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8270531..8270840 17..326 100 -> Plus
arm_3R 8271700..8272036 327..663 100 -> Plus
arm_3R 8272098..8272283 664..849 100 -> Plus
arm_3R 8272345..8272660 850..1167 99   Plus

BO08310.pep Sequence

Translation from 16 to 1183

> BO08310.pep
MPPNAQAGAQSISDSLIAAASAAADAGQSPTKLQEDSTGVLFECDVETTD
GGLVKDITVMKKAEKRRLKLVWRNIIAFGYLHLAALYGAYLMVTSAKWQT
CILAYFLYVISGLGITAGAHRLWAHRSYKAKWPLRVILVIFNTIAFQDAA
YHWARDHRVHHKYSETDADPHNATRGFFFSHVGWLLCKKHPEVKAKGKGV
DLSDLRADPILMFQKKYYMILMPIACFIIPTVVPMYAWGESFMNAWFVAT
MFRWCFILNVTWLVNSAAHKFGGRPYDKFINPSENISVAILAFGEGWHNY
HHVFPWDYKTAEFGKYSLNFTTAFIDFFAKIGWAYDLKTVSTDIIKKRVK
RTGDGTHATWGWGDVDQPKEEIEDAVITHKKSEASFLDH

BO08310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
Desat1-PD 383 CG5887-PD 1..383 1..383 2075 100 Plus
Desat1-PB 383 CG5887-PB 1..383 1..383 2075 100 Plus
Desat1-PE 383 CG5887-PE 1..383 1..383 2075 100 Plus
Desat1-PC 383 CG5887-PC 1..383 1..383 2075 100 Plus
Desat1-PA 383 CG5887-PA 1..383 1..383 2075 100 Plus