Clone BO08311 Report

Search the DGRC for BO08311

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG33692-RA
Protein status:BO08311.pep: validated full length
Sequenced Size:814

Clone Sequence Records

BO08311.3prime Sequence

786 bp (770 high quality bases) assembled on 2006-01-06

> BO08311.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCGCATCGCCAGCATACCATGGATGCA
CCCACGGCGCCGATGGCGGCGGAGTGGGTGGATATATGGTGGGCGATGGC
TGACCATGTGTATGATGGGCCGCCGCTGCTGCCGCCGCTGCCGCTGCTGC
TGCAGCATGATGATGTGCCGCCGCAGCAGCCGCTGCCGCATGATGATGAT
GATGGTGCTGATATGGTGCCGTAAATGCCGCCGCCGCCGCTGCCGCCGCA
CTGCCGTAGTAGGATGCGGCGGCCAGGGCAGCTGCCGCCGCCGTTGTTGG
CGAAGCCGTCGATGAGGAGTGCGTCGAGGAAGCTGGCGACAGGCTGGCCA
GTCCAGCGGCACACACGCTATGCCGGCGATGCATTATATGCCGTTGGGGT
GGCGCCGCCACTGCCGCTGCAGCCGCCGGTTGCTGCTGCTGCTGCTGCGT
TTGCTGCTGCTGATGCGGATGCTGCTGCGGTTGGTGGGGCGGCGTTGGTG
CTGCCGCCTGTGTCCTTCGCTGCCTCTGCTGTTCCCACTCGGGCATGACA
TTGCCCATGGGTGGACTTAGCATGCTGGCCGCCGCCTTGCCATACAAATT
CGATAGATAGGCGTGCTCTACTTCGGCCATTTTCTGAGCGGCAGCCGCAG
CAGCGCGCGGATTCTTTGCCGCCGTCTGCTCGGCATGCTGGCGCTTCTTT
AGCAAACGCTGCTGCTCGTGCTGCTGCTGATGGTGGTGCTGCTGGGCTGC
TGGATGGTGCGGGTGCGGGTGTGGGTGTGGGGTTGG

BO08311.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33692-PA 783 CG33692-RA 18..780 781..19 3815 100 Minus
CG33692-PB 783 CG33692-RB 18..780 781..19 3815 100 Minus
CG33692-PC 783 CG33692-RC 18..780 781..19 3815 100 Minus
CG4013-PA 10815 Smr-RA 7231..7277 462..416 135 91.4 Minus
CG4013-PB 10815 Smr-RB 7231..7277 462..416 135 91.4 Minus
CG4013-PC 10815 Smr-RC 7231..7277 462..416 135 91.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-RL 7668 CG43736-RL 5177..5939 781..19 3815 100 Minus
CG43736-RI 7387 CG43736-RI 4896..5658 781..19 3815 100 Minus
CG43736-RG 5533 CG43736-RG 3042..3804 781..19 3815 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:40:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6879089..6879851 781..19 3815 100 Minus
X 23542271 X 12691034..12691093 416..475 195 88.3 Plus
Blast to na_te.dros performed on 2015-02-13 12:40:51 has no hits.

BO08311.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:38 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG32737-PE 12..783 16..786 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:43 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG33692-PC 12..783 16..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:58 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 3318..4091 13..786 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:27 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
CG43736-RG 3036..3809 13..786 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:27 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
X 6879083..6879856 13..786 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:58 Download gff for BO08311.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6773116..6773889 13..786 99   Minus

BO08311.5prime Sequence

812 bp (758 high quality bases) assembled on 2006-01-06

> BO08311.5prime
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCGCAA
GCTTTCTAGACC

BO08311.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG33692-PA 783 CG33692-RA 1..780 17..796 3900 100 Plus
CG33692-PB 783 CG33692-RB 1..780 17..796 3900 100 Plus
CG33692-PC 783 CG33692-RC 1..780 17..796 3900 100 Plus
CG4013-PA 10815 Smr-RA 7231..7277 353..399 135 91.4 Plus
CG4013-PB 10815 Smr-RB 7231..7277 353..399 135 91.4 Plus
CG4013-PC 10815 Smr-RC 7231..7277 353..399 135 91.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-RL 7668 CG43736-RL 5156..5939 13..796 3905 99.9 Plus
CG43736-RI 7387 CG43736-RI 4875..5658 13..796 3905 99.9 Plus
CG43736-RG 5533 CG43736-RG 3021..3804 13..796 3905 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6879068..6879851 13..796 3905 99.9 Plus
X 23542271 X 12691034..12691093 399..340 195 88.3 Minus
Blast to na_te.dros performed on 2015-02-13 00:47:03 has no hits.

BO08311.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:39 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG32737-PE 1..783 17..799 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:45 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33692-PC 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:34:24 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 3299..4091 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:23 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
CG43736-RG 3017..3809 9..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:23 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6879064..6879856 9..802 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:34:24 Download gff for BO08311.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6773097..6773889 9..802 99   Plus

BO08311.complete Sequence

814 bp (814 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631146

> BO08311.complete
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCGCAA
GCTTTCTAGACCAT

BO08311.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-RG 3432 CG43736-PG 2646..3429 13..796 3905 99.9 Plus
CG43736-RF 3687 CG43736-PF 2901..3684 13..796 3905 99.9 Plus
Smr-RG 10824 CG4013-PG 7227..7286 340..399 195 88.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-RL 7668 CG43736-RL 5156..5939 13..796 3905 99.9 Plus
CG43736-RI 7387 CG43736-RI 4875..5658 13..796 3905 99.9 Plus
CG43736-RG 5533 CG43736-RG 3021..3804 13..796 3905 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6879068..6879851 13..796 3905 99.9 Plus
X 23542271 X 12691034..12691093 399..340 195 88.3 Minus
Blast to na_te.dros performed on 2014-11-27 10:30:13 has no hits.

BO08311.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:04 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 1..783 17..799 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:05 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 755..1547 9..802 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:55 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RF 3312..4086 22..798 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:04 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
CG33692-RC 755..1547 9..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:30 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
CG43736-RG 3030..3804 22..798 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:30 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
X 6879077..6879851 22..798 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:55 Download gff for BO08311.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6773110..6773884 22..798 99   Plus

BO08311.pep Sequence

Translation from 16 to 814

> BO08311.pep
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAFASFLDH

BO08311.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG43736-PG 1143 CG43736-PG 884..1143 1..260 1399 100 Plus
CG43736-PF 1228 CG43736-PF 969..1228 1..260 1399 100 Plus
A2bp1-PF 763 CG32062-PF 496..719 9..241 231 36 Plus
A2bp1-PL 858 CG32062-PL 513..736 9..241 231 36 Plus
A2bp1-PE 865 CG32062-PE 496..719 9..241 231 36 Plus