Clone Sequence Records
BO08311.3prime Sequence
786 bp (770 high quality bases) assembled on 2006-01-06
> BO08311.3prime
ATGGTCTAGAAAGCTTGCGAAGGCCGCATCGCCAGCATACCATGGATGCA
CCCACGGCGCCGATGGCGGCGGAGTGGGTGGATATATGGTGGGCGATGGC
TGACCATGTGTATGATGGGCCGCCGCTGCTGCCGCCGCTGCCGCTGCTGC
TGCAGCATGATGATGTGCCGCCGCAGCAGCCGCTGCCGCATGATGATGAT
GATGGTGCTGATATGGTGCCGTAAATGCCGCCGCCGCCGCTGCCGCCGCA
CTGCCGTAGTAGGATGCGGCGGCCAGGGCAGCTGCCGCCGCCGTTGTTGG
CGAAGCCGTCGATGAGGAGTGCGTCGAGGAAGCTGGCGACAGGCTGGCCA
GTCCAGCGGCACACACGCTATGCCGGCGATGCATTATATGCCGTTGGGGT
GGCGCCGCCACTGCCGCTGCAGCCGCCGGTTGCTGCTGCTGCTGCTGCGT
TTGCTGCTGCTGATGCGGATGCTGCTGCGGTTGGTGGGGCGGCGTTGGTG
CTGCCGCCTGTGTCCTTCGCTGCCTCTGCTGTTCCCACTCGGGCATGACA
TTGCCCATGGGTGGACTTAGCATGCTGGCCGCCGCCTTGCCATACAAATT
CGATAGATAGGCGTGCTCTACTTCGGCCATTTTCTGAGCGGCAGCCGCAG
CAGCGCGCGGATTCTTTGCCGCCGTCTGCTCGGCATGCTGGCGCTTCTTT
AGCAAACGCTGCTGCTCGTGCTGCTGCTGATGGTGGTGCTGCTGGGCTGC
TGGATGGTGCGGGTGCGGGTGTGGGTGTGGGGTTGG
BO08311.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33692-PA | 783 | CG33692-RA | 18..780 | 781..19 | 3815 | 100 | Minus |
CG33692-PB | 783 | CG33692-RB | 18..780 | 781..19 | 3815 | 100 | Minus |
CG33692-PC | 783 | CG33692-RC | 18..780 | 781..19 | 3815 | 100 | Minus |
CG4013-PA | 10815 | Smr-RA | 7231..7277 | 462..416 | 135 | 91.4 | Minus |
CG4013-PB | 10815 | Smr-RB | 7231..7277 | 462..416 | 135 | 91.4 | Minus |
CG4013-PC | 10815 | Smr-RC | 7231..7277 | 462..416 | 135 | 91.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5177..5939 | 781..19 | 3815 | 100 | Minus |
CG43736-RI | 7387 | CG43736-RI | 4896..5658 | 781..19 | 3815 | 100 | Minus |
CG43736-RG | 5533 | CG43736-RG | 3042..3804 | 781..19 | 3815 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:40:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879089..6879851 | 781..19 | 3815 | 100 | Minus |
X | 23542271 | X | 12691034..12691093 | 416..475 | 195 | 88.3 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:40:51 has no hits.
BO08311.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:38 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32737-PE | 12..783 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:43 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-PC | 12..783 | 16..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 18:11:58 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3318..4091 | 13..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:19:27 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3036..3809 | 13..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:19:27 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879083..6879856 | 13..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 18:11:58 Download gff for
BO08311.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773116..6773889 | 13..786 | 99 | | Minus |
BO08311.5prime Sequence
812 bp (758 high quality bases) assembled on 2006-01-06
> BO08311.5prime
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCGCAA
GCTTTCTAGACC
BO08311.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33692-PA | 783 | CG33692-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
CG33692-PB | 783 | CG33692-RB | 1..780 | 17..796 | 3900 | 100 | Plus |
CG33692-PC | 783 | CG33692-RC | 1..780 | 17..796 | 3900 | 100 | Plus |
CG4013-PA | 10815 | Smr-RA | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
CG4013-PB | 10815 | Smr-RB | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
CG4013-PC | 10815 | Smr-RC | 7231..7277 | 353..399 | 135 | 91.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:47:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5156..5939 | 13..796 | 3905 | 99.9 | Plus |
CG43736-RI | 7387 | CG43736-RI | 4875..5658 | 13..796 | 3905 | 99.9 | Plus |
CG43736-RG | 5533 | CG43736-RG | 3021..3804 | 13..796 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879068..6879851 | 13..796 | 3905 | 99.9 | Plus |
X | 23542271 | X | 12691034..12691093 | 399..340 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:47:03 has no hits.
BO08311.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:39 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32737-PE | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:45 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-PC | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:34:24 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3299..4091 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:58:23 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3017..3809 | 9..802 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:58:23 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879064..6879856 | 9..802 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:34:24 Download gff for
BO08311.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773097..6773889 | 9..802 | 99 | | Plus |
BO08311.complete Sequence
814 bp (814 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631146
> BO08311.complete
GAAGTTATCAGTCGACATGTTGTACTCCCACAACCCACACCCACACCCGC
ACCCGCACCATCCAGCAGCCCAGCAGCACCACCATCAGCAGCAGCACGAG
CAGCAGCGTTTGCTAAAGAAGCGCCAGCATGCCGAGCAGACGGCGGCAAA
GAATCCGCGCGCTGCTGCGGCTGCCGCTCAGAAAATGGCCGAAGTAGAGC
ACGCCTATCTATCGAATTTGTATGGCAAGGCGGCGGCCAGCATGCTAAGT
CCACCCATGGGCAATGTCATGCCCGAGTGGGAACAGCAGAGGCAGCGAAG
GACACAGGCGGCAGCACCAACGCCGCCCCACCAACCGCAGCAGCATCCGC
ATCAGCAGCAGCAAACGCAGCAGCAGCAGCAGCAACCGGCGGCTGCAGCG
GCAGTGGCGGCGCCACCCCAACGGCATATAATGCATCGCCGGCATAGCGT
GTGTGCCGCTGGACTGGCCAGCCTGTCGCCAGCTTCCTCGACGCACTCCT
CATCGACGGCTTCGCCAACAACGGCGGCGGCAGCTGCCCTGGCCGCCGCA
TCCTACTACGGCAGTGCGGCGGCAGCGGCGGCGGCGGCATTTACGGCACC
ATATCAGCACCATCATCATCATCATGCGGCAGCGGCTGCTGCGGCGGCAC
ATCATCATGCTGCAGCAGCAGCGGCAGCGGCGGCAGCAGCGGCGGCCCAT
CATACACATGGTCAGCCATCGCCCACCATATATCCACCCACTCCGCCGCC
ATCGGCGCCGTGGGTGCATCCATGGTATGCTGGCGATGCGGCCTTCGCAA
GCTTTCTAGACCAT
BO08311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:30:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RG | 3432 | CG43736-PG | 2646..3429 | 13..796 | 3905 | 99.9 | Plus |
CG43736-RF | 3687 | CG43736-PF | 2901..3684 | 13..796 | 3905 | 99.9 | Plus |
Smr-RG | 10824 | CG4013-PG | 7227..7286 | 340..399 | 195 | 88.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:30:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-RL | 7668 | CG43736-RL | 5156..5939 | 13..796 | 3905 | 99.9 | Plus |
CG43736-RI | 7387 | CG43736-RI | 4875..5658 | 13..796 | 3905 | 99.9 | Plus |
CG43736-RG | 5533 | CG43736-RG | 3021..3804 | 13..796 | 3905 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6879068..6879851 | 13..796 | 3905 | 99.9 | Plus |
X | 23542271 | X | 12691034..12691093 | 399..340 | 195 | 88.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:30:13 has no hits.
BO08311.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:09:04 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 1..783 | 17..799 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:29:05 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 755..1547 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:18:55 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RF | 3312..4086 | 22..798 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:09:04 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33692-RC | 755..1547 | 9..802 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:30 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG43736-RG | 3030..3804 | 22..798 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:30 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6879077..6879851 | 22..798 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:18:55 Download gff for
BO08311.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6773110..6773884 | 22..798 | 99 | | Plus |
BO08311.pep Sequence
Translation from 16 to 814
> BO08311.pep
MLYSHNPHPHPHPHHPAAQQHHHQQQHEQQRLLKKRQHAEQTAAKNPRAA
AAAAQKMAEVEHAYLSNLYGKAAASMLSPPMGNVMPEWEQQRQRRTQAAA
PTPPHQPQQHPHQQQQTQQQQQQPAAAAAVAAPPQRHIMHRRHSVCAAGL
ASLSPASSTHSSSTASPTTAAAAALAAASYYGSAAAAAAAAFTAPYQHHH
HHHAAAAAAAAHHHAAAAAAAAAAAAAHHTHGQPSPTIYPPTPPPSAPWV
HPWYAGDAAFASFLDH
BO08311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:44:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG43736-PG | 1143 | CG43736-PG | 884..1143 | 1..260 | 1399 | 100 | Plus |
CG43736-PF | 1228 | CG43736-PF | 969..1228 | 1..260 | 1399 | 100 | Plus |
A2bp1-PF | 763 | CG32062-PF | 496..719 | 9..241 | 231 | 36 | Plus |
A2bp1-PL | 858 | CG32062-PL | 513..736 | 9..241 | 231 | 36 | Plus |
A2bp1-PE | 865 | CG32062-PE | 496..719 | 9..241 | 231 | 36 | Plus |