Clone Sequence Records
BO08312.3prime Sequence
917 bp (873 high quality bases) assembled on 2006-01-06
> BO08312.3prime
ATGGTCTAGAAAGCTTGCTACGAAGTTATGATCCTCCTTAATCATATCGG
CTGCTTTTTCAGCTATTAGGTAGACGGGTCCATTGGGATGACCCGAGATC
AAATAGGGCATAATGCTTGCATCCACAACGCGCAGTTTGTCGATGCCATG
GACCCGCAGTCGGGCATCCACCACCGCCGAGGGATCCGATCGAGGACCCA
TCTTGGCGGTTCCTGAATAGTGGTAAATGGTGAAGGTAAAGTGTCGTGCA
TAACATGCCCAATAGGCGCTGCTCTTCCATTTATATTTCGCACAATTGGG
TATTCTCTTTTCTAATAAGTGTGCACCGATTGCCTTAAATGCGGGCATAT
CCAGTAAACTTACTGCCTGCTCGATGCCGCGAACTGTGATGTTCATGTCA
TAGGGATTTGCGAAGTAGTTGGCATAGATCCGTGGATGCTCCTCGGGATT
TCGGCTCTTCAGCTTGATGCGACCGCGACTCTTGGCGCGCAAAATCATCG
GGAATATCAAAAAGCCATTGGCACTCTGGCGTTCCAGTTCGCCAAACATG
GTCTCATAGATATTCGATTGGATGCCCAATGCCAGACGTAGGGCCAAATT
CGTTTGCAAACCACCGCCCACCACAAAGAGTTCCATATCGGCCCAAGCAT
CGGGATTACGTGCATCGTCCAGGGCGTAGAATGATATGGCCTCCACACCA
CCCGGTATGCGGAGCACTCCGCGTCCCTTCAGGAAATCTGACATTGCCTC
CGAGCGGAACATCTCGCTCGTTTGCAGCGAACTCACATTGCACAAGAAGC
TGATAGCCGGAGCTATGTGATCCTGGAGGTTGTAGCCAACGGCCAGATCG
GCCAGTGGCTTTATGCCCATCTCCCGCAAATGTTTAGCGGGTCCCACGCC
GGAGAGCATCAGTAGCT
BO08312.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-PA | 1869 | CG9519-RA | 968..1866 | 917..19 | 4495 | 100 | Minus |
| CG9521-PA | 1866 | CG9521-RA | 1636..1685 | 243..194 | 175 | 94 | Minus |
| CG9521-PA | 1866 | CG9521-RA | 1375..1425 | 504..454 | 155 | 92.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 20:39:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 1026..1924 | 917..19 | 4495 | 100 | Minus |
| CG9521-RA | 2265 | CG9521-RA | 1759..1998 | 267..28 | 390 | 77.5 | Minus |
| CG9521-RA | 2265 | CG9521-RA | 1507..1625 | 519..401 | 250 | 80.7 | Minus |
| CG9521-RA | 2265 | CG9521-RA | 1111..1220 | 915..806 | 235 | 80.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 20:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14854438..14855336 | 19..917 | 4495 | 100 | Plus |
| X | 23542271 | X | 14851272..14851511 | 28..267 | 390 | 77.5 | Plus |
| X | 23542271 | X | 14851645..14851763 | 401..519 | 250 | 80.7 | Plus |
| X | 23542271 | X | 14852050..14852159 | 806..915 | 235 | 80.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 20:38:56 has no hits.
BO08312.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:40 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-PA | 968..1869 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:46 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-PA | 968..1869 | 18..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:28:24 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 1026..1930 | 13..917 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:53:06 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 1026..1930 | 13..917 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:53:06 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14854432..14855336 | 13..917 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:28:24 Download gff for
BO08312.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14748465..14749369 | 13..917 | 99 | | Plus |
BO08312.5prime Sequence
878 bp (823 high quality bases) assembled on 2006-01-06
> BO08312.5prime
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAAGGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGC
BO08312.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-PA | 1869 | CG9519-RA | 1..862 | 17..878 | 4310 | 100 | Plus |
| CG9521-PA | 1866 | CG9521-RA | 376..493 | 398..515 | 490 | 96.6 | Plus |
| CG9521-PA | 1866 | CG9521-RA | 208..285 | 230..307 | 240 | 92.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:19:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 58..920 | 16..878 | 4315 | 100 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 325..767 | 200..642 | 1105 | 84.1 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 413..546 | 235 | 80.1 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 904..1003 | 779..878 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14855442..14856304 | 878..16 | 4315 | 100 | Minus |
| X | 23542271 | X | 14852503..14852945 | 642..200 | 1090 | 83.1 | Minus |
| X | 23542271 | X | 14865481..14865614 | 546..413 | 235 | 78.4 | Minus |
| X | 23542271 | X | 14852267..14852366 | 878..779 | 185 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-11 04:19:50 has no hits.
BO08312.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:41 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:48 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-PA | 1..862 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:58:43 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..920 | 12..878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:50:57 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..920 | 12..878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:50:57 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14855442..14856306 | 12..878 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:58:43 Download gff for
BO08312.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14749475..14750339 | 12..878 | 99 | | Minus |
BO08312.complete Sequence
1900 bp (1900 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631147
> BO08312.complete
GAAGTTATCAGTCGACATGATGACTTCGCCACGAAATCACATCGGAACCC
TTCTTGTCGTCTGGCTACTGGAGTTCTCAATGGTGATTAGCCAGACTGAC
ACGGGCAATGCATTGATGGATATGCTCGAGATCTATCGTCGCGGTCAGGC
GCAATTGGATCTGGAGAATCTGGACGAGGGTCAGGTCATAACGACGAAAT
ATGATTTCATAGTGGTTGGTGCCGGCACAGCTGGTTGTGCCCTAGCCGCG
CGACTCTCCGAGAATCCCCGGTGGCGAGTGCTACTCCTGGAGGCCGGTGG
TCCCGAGAACTATGCCATGGACATACCAATTGTGGCGCATCTCTTGCAGC
TGGGCGAAATCAACTGGAAGTACAAAACGGAGCCATCGAATAGCTATTGC
CTGGCCATGAACAACAATCGCTGCAATTGGCCCAGGGGCAAGGTGATGGG
TGGCAGCTCGGTGCTCAACTATATGATGTACACCAGGGGCAATCGCCGCG
ACTACGATCGCTGGGCACGTTTGGGCAATCCGGGCTGGAGTTACGAGGAG
GTACTACCCTATTTCAAGAAGTACGAGGGCAGCGTAGTGCCGGATGCCGA
TGAGAATCTGGTGGGACGCAATGGGCCGGTGAAGGTGAGCTACTCGGAGA
CGAGGACTCGCATCGCAGACGCCTTTGTGGGAGCCACCCAAGATGCAGGA
TTGCCGCGAGGTGACTACAATGGAGATAAACAGATTCGTGTGTCCTATCT
GCAGGCGAATATCTACAATGAGACCCGTTGGAGCTCCAATCGAGCGTATC
TGTATCCCATTAAGGGAAAGCGTCGAAATCTTCATGTGAAGAAGAATGCC
TTGGTTACCAAGATCTTGATTGATCCGCAGACGAAATCGGCATTTGGTAT
AATCGTCAAAATGGATGGCAAAATGCAAAAGATTTTGGCCAGAAAAGAGG
TCATTCTATCGGCGGGTGCCATCAATACACCCCAGCTACTGATGCTCTCC
GGCGTGGGACCCGCTAAACATTTGCGGGAGATGGGCATAAAGCCACTGGC
CGATCTGGCCGTTGGCTACAACCTCCAGGATCACATAGCTCCGGCTATCA
GCTTCTTGTGCAATGTGAGTTCGCTGCAAACGAGCGAGATGTTCCGCTCG
GAGGCAATGTCAGATTTCCTGAAGGGACGCGGAGTGCTCCGCATACCGGG
TGGTGTGGAGGCCATATCATTCTACGCCCTGGACGATGCACGTAATCCCG
ATGCTTGGGCCGATATGGAACTCTTTGTGGTGGGCGGTGGTTTGCAAACG
AATTTGGCCCTACGTCTGGCATTGGGCATCCAATCGAATATCTATGAGAC
CATGTTTGGCGAACTGGAACGCCAGAGTGCCAATGGCTTTTTGATATTCC
CGATGATTTTGCGCGCCAAGAGTCGCGGTCGCATCAAGCTGAAGAGCCGA
AATCCCGAGGAGCATCCACGGATCTATGCCAACTACTTCGCAAATCCCTA
TGACATGAACATCACAGTTCGCGGCATCGAGCAGGCAGTAAGTTTACTGG
ATATGCCCGCATTTAAGGCAATCGGTGCACACTTATTAGAAAAGAGAATA
CCCAATTGTGCGAAATATAAATGGAAGAGCAGCGCCTATTGGGCATGTTA
TGCACGACACTTTACCTTCACCATTTACCACTATTCAGGAACCGCCAAGA
TGGGTCCTCGATCGGATCCCTCGGCGGTGGTGGATGCCCGACTGCGGGTC
CATGGCATCGACAAACTGCGCGTTGTGGATGCAAGCATTATGCCCTATTT
GATCTCGGGTCATCCCAATGGACCCGTCTACCTAATAGCTGAAAAAGCAG
CCGATATGATTAAGGAGGATCATAACTTCGTAGCAAGCTTTCTAGACCAT
BO08312.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:05:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 1869 | CG9519-PA | 1..1866 | 17..1882 | 9330 | 100 | Plus |
| CG9521-RA | 1866 | CG9521-PA | 178..1073 | 200..1095 | 1405 | 77.1 | Plus |
| CG9521-RA | 1866 | CG9521-PA | 1612..1851 | 1634..1873 | 390 | 77.5 | Plus |
| CG9521-RA | 1866 | CG9521-PA | 1360..1478 | 1382..1500 | 250 | 80.7 | Plus |
| CG9518-RC | 2112 | CG9518-PC | 382..515 | 413..546 | 235 | 78.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:05:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-RA | 2034 | CG9519-RA | 58..1924 | 16..1882 | 9335 | 100 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 325..1220 | 200..1095 | 1405 | 77.1 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 1759..1998 | 1634..1873 | 390 | 77.5 | Plus |
| CG9521-RA | 2265 | CG9521-RA | 1507..1625 | 1382..1500 | 250 | 80.7 | Plus |
| CG9518-RC | 3952 | CG9518-RC | 1327..1460 | 413..546 | 235 | 78.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:05:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14854438..14856304 | 1882..16 | 9335 | 100 | Minus |
| X | 23542271 | X | 14852050..14852945 | 1095..200 | 1405 | 77.1 | Minus |
| X | 23542271 | X | 14851272..14851511 | 1873..1634 | 390 | 77.5 | Minus |
| X | 23542271 | X | 14851645..14851763 | 1500..1382 | 250 | 80.7 | Minus |
| X | 23542271 | X | 14865481..14865614 | 546..413 | 235 | 78.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:05:33 has no hits.
BO08312.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:01:04 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 1..1869 | 17..1883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:33 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..1930 | 12..1888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:03:02 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 59..1924 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:01:04 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 56..1930 | 12..1888 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:36 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9519-RA | 59..1924 | 17..1884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:36 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14854436..14856303 | 17..1884 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:03:02 Download gff for
BO08312.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14748469..14750336 | 17..1884 | 99 | | Minus |
BO08312.pep Sequence
Translation from 16 to 1900
> BO08312.pep
MMTSPRNHIGTLLVVWLLEFSMVISQTDTGNALMDMLEIYRRGQAQLDLE
NLDEGQVITTKYDFIVVGAGTAGCALAARLSENPRWRVLLLEAGGPENYA
MDIPIVAHLLQLGEINWKYKTEPSNSYCLAMNNNRCNWPRGKVMGGSSVL
NYMMYTRGNRRDYDRWARLGNPGWSYEEVLPYFKKYEGSVVPDADENLVG
RNGPVKVSYSETRTRIADAFVGATQDAGLPRGDYNGDKQIRVSYLQANIY
NETRWSSNRAYLYPIKGKRRNLHVKKNALVTKILIDPQTKSAFGIIVKMD
GKMQKILARKEVILSAGAINTPQLLMLSGVGPAKHLREMGIKPLADLAVG
YNLQDHIAPAISFLCNVSSLQTSEMFRSEAMSDFLKGRGVLRIPGGVEAI
SFYALDDARNPDAWADMELFVVGGGLQTNLALRLALGIQSNIYETMFGEL
ERQSANGFLIFPMILRAKSRGRIKLKSRNPEEHPRIYANYFANPYDMNIT
VRGIEQAVSLLDMPAFKAIGAHLLEKRIPNCAKYKWKSSAYWACYARHFT
FTIYHYSGTAKMGPRSDPSAVVDARLRVHGIDKLRVVDASIMPYLISGHP
NGPVYLIAEKAADMIKEDHNFVASFLDH
BO08312.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9519-PA | 622 | CG9519-PA | 1..622 | 1..622 | 3253 | 100 | Plus |
| CG9521-PA | 621 | CG9521-PA | 22..620 | 24..622 | 2164 | 66.9 | Plus |
| CG9518-PC | 703 | CG9518-PC | 56..616 | 61..618 | 1245 | 45.6 | Plus |
| CG9518-PB | 703 | CG9518-PB | 56..616 | 61..618 | 1245 | 45.6 | Plus |
| CG9518-PA | 703 | CG9518-PA | 56..616 | 61..618 | 1245 | 45.6 | Plus |
