Clone BO08313 Report

Search the DGRC for BO08313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptHph-RA
Protein status:BO08313.pep: validated full length
Sequenced Size:1009

Clone Sequence Records

BO08313.3prime Sequence

934 bp (827 high quality bases) assembled on 2006-01-06

> BO08313.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCCG
GCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACCG
CGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCTG
GAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGGC
CCGTCTCCATCCCCAGGAAGTCGTCCACCACGGACAGACCATACTGGTTC
ATGTCGCTGATGATGTTACGGCACAGATCCTCATAGCGGCGCTCACGCTT
GTCCAAAAGTTCCCGAAAGTACTGCTCAACATTG

BO08313.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PA 978 Hph-RA 60..975 934..19 4555 99.8 Minus
CG31543-PC 1437 Hph-RC 557..1434 896..19 4390 100 Minus
CG31543-PB 837 Hph-RB 1..834 852..19 4170 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:59
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 661..1576 934..19 4565 99.9 Minus
Hph-RD 3171 CG44015-RD 1085..1962 896..19 4390 100 Minus
Hph-RC 2496 CG44015-RC 1085..1962 896..19 4390 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 395..19 1885 100 Minus
3R 32079331 3R 5266752..5267032 896..616 1405 100 Minus
3R 32079331 3R 5267262..5267402 535..395 705 100 Minus
3R 32079331 3R 5267117..5267202 619..534 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:10:54 has no hits.

BO08313.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:42 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 60..978 15..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:49 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 60..978 15..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:43 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 661..1579 15..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:19 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 661..1579 15..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:19 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5267462..5267836 20..394 100 -> Minus
3R 5265599..5265637 896..934 97 -> Minus
3R 5266753..5267032 616..895 100 -> Minus
3R 5267121..5267201 535..615 100 -> Minus
3R 5267263..5267402 395..534 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:43 Download gff for BO08313.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092843..1092923 535..615 100 -> Minus
arm_3R 1092985..1093124 395..534 100 -> Minus
arm_3R 1092475..1092754 616..895 100 -> Minus
arm_3R 1091321..1091359 896..934 97 -> Minus
arm_3R 1093184..1093558 20..394 100 -> Minus

BO08313.5prime Sequence

963 bp (797 high quality bases) assembled on 2006-01-06

> BO08313.5prime
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAAGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCCGGTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTC

BO08313.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG31543-PA 978 Hph-RA 1..947 17..963 4660 99.6 Plus
CG31543-PC 1437 Hph-RC 557..1406 114..963 4175 99.6 Plus
CG31543-PB 837 Hph-RB 1..806 158..963 3955 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:06
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 602..1548 17..963 4690 99.7 Plus
Hph-RD 3171 CG44015-RD 1085..1934 114..963 4205 99.6 Plus
Hph-RC 2496 CG44015-RC 1085..1934 114..963 4205 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267809 615..963 1700 99.1 Plus
3R 32079331 3R 5266752..5267032 114..394 1405 100 Plus
3R 32079331 3R 5267262..5267402 475..615 705 100 Plus
3R 32079331 3R 5265540..5265637 17..114 490 100 Plus
3R 32079331 3R 5267117..5267202 391..476 430 100 Plus
Blast to na_te.dros performed on 2015-02-12 15:58:06 has no hits.

BO08313.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:43 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:50 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31543-PA 1..947 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:52 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 591..1548 7..963 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:11 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 591..1548 7..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:11 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5265529..5265637 7..114 96 -> Plus
3R 5266753..5267032 115..394 100 -> Plus
3R 5267121..5267201 395..475 100 -> Plus
3R 5267263..5267402 476..615 100 -> Plus
3R 5267462..5267809 616..963 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:52 Download gff for BO08313.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1091251..1091359 7..114 96 -> Plus
arm_3R 1092475..1092754 115..394 100 -> Plus
arm_3R 1092843..1092923 395..475 100 -> Plus
arm_3R 1092985..1093124 476..615 100 -> Plus
arm_3R 1093184..1093531 616..963 99   Plus

BO08313.complete Sequence

1009 bp (1009 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631148

> BO08313.complete
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGGCAAGCTTT
CTAGACCAT

BO08313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:11
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 978 CG44015-PA 1..975 17..991 4875 100 Plus
Hph-RD 1437 CG44015-PD 557..1434 114..991 4390 100 Plus
Hph-RC 1437 CG44015-PC 557..1434 114..991 4390 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:12
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-RA 2337 CG44015-RA 602..1576 17..991 4875 100 Plus
Hph-RD 3171 CG44015-RD 1085..1962 114..991 4390 100 Plus
Hph-RC 2496 CG44015-RC 1085..1962 114..991 4390 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5267461..5267837 615..991 1885 100 Plus
3R 32079331 3R 5266752..5267032 114..394 1405 100 Plus
3R 32079331 3R 5267262..5267402 475..615 705 100 Plus
3R 32079331 3R 5265540..5265637 17..114 490 100 Plus
3R 32079331 3R 5267117..5267202 391..476 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 13:12:09 has no hits.

BO08313.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:05 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 1..978 17..995 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:23 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 588..1576 7..995 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:14 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 602..1576 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:06 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 588..1576 7..995 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:08 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
Hph-RA 602..1576 17..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:08 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5265540..5265637 17..114 100 -> Plus
3R 5266753..5267032 115..394 100 -> Plus
3R 5267121..5267201 395..475 100 -> Plus
3R 5267263..5267402 476..615 100 -> Plus
3R 5267462..5267837 616..993 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:14 Download gff for BO08313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1092475..1092754 115..394 100 -> Plus
arm_3R 1092843..1092923 395..475 100 -> Plus
arm_3R 1091262..1091359 17..114 100 -> Plus
arm_3R 1092985..1093124 476..615 100 -> Plus
arm_3R 1093184..1093559 616..993 99   Plus

BO08313.pep Sequence

Translation from 16 to 1009

> BO08313.pep
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICTASFLDH

BO08313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
Hph-PA 325 CG44015-PA 1..325 1..325 1719 100 Plus
Hph-PD 478 CG44015-PD 187..478 34..325 1543 100 Plus
Hph-PC 478 CG44015-PC 187..478 34..325 1543 100 Plus
Hph-PB 278 CG44015-PB 1..278 48..325 1468 100 Plus