Clone Sequence Records
BO08313.3prime Sequence
934 bp (827 high quality bases) assembled on 2006-01-06
> BO08313.3prime
ATGGTCTAGAAAGCTTGCCGTGCATATTTCGCTGCTGGTGGCGCAGGAAT
TACTCGACACATTGGCGTTCAGCGCTCCCGTTCCCGTGGACATGCTAACC
GGCAGACTGGATGCGGATGAAGCTGGTGCTGCGGGTGGTGTGGTGGTGGA
GTCTGGTTCAGCCTGTTGGGCTTGGGCTTGAGCTGCCAGATTGTTCGTCT
TGCTGTTTTCCAGCTTGGCCCTAATGAGGGCCTCCTCGCGTTCCTTGGCA
TCGAAGTACCAGACGGTGATGGCATAGCGGGTACGGTGAGCGGGCTGCAC
TTCGTGGGGATTCCGAATGTCAGACCAGAAGAATATCAGGCGATCAAACT
TGGGCTCAATATCCGCCACTGTGGTTCCGGGTGTTGGCCGAATTCGCAGA
ATGCCGCCACTTTCCCGCGCATCCCAGTTGATATTCAGGTAGTATATGGC
CGTTATAACGCGGCCATCCTTTTGGGGATTGTCCACATGCATGACGTAGT
GAGTTCCCGATCCCGGATAACAAGCGACCATTGCCCTCGTGCGCTCCCTG
ATGTGGTAGTTGCCCAAGATGCCATTATCCTTCATCGTGTTAACACGATA
CACCACAGAGTCAATCTGATTGGTCAGATACCAGACATTGCTGCAGCCCG
GCTCATTGCCACCAACCCACTTGATCTTATCGCCTCGGATCTTGTCACCG
CGCACCGCGGGTGCATCGGGCGTCTGGTTGGTCACCACTTGGCCATCCTG
GAAGGCTCCTGCGTTGTACATGCTTCGAACCTCGTTGAGGATCTTCAGGC
CCGTCTCCATCCCCAGGAAGTCGTCCACCACGGACAGACCATACTGGTTC
ATGTCGCTGATGATGTTACGGCACAGATCCTCATAGCGGCGCTCACGCTT
GTCCAAAAGTTCCCGAAAGTACTGCTCAACATTG
BO08313.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PA | 978 | Hph-RA | 60..975 | 934..19 | 4555 | 99.8 | Minus |
CG31543-PC | 1437 | Hph-RC | 557..1434 | 896..19 | 4390 | 100 | Minus |
CG31543-PB | 837 | Hph-RB | 1..834 | 852..19 | 4170 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:10:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 661..1576 | 934..19 | 4565 | 99.9 | Minus |
Hph-RD | 3171 | CG44015-RD | 1085..1962 | 896..19 | 4390 | 100 | Minus |
Hph-RC | 2496 | CG44015-RC | 1085..1962 | 896..19 | 4390 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 395..19 | 1885 | 100 | Minus |
3R | 32079331 | 3R | 5266752..5267032 | 896..616 | 1405 | 100 | Minus |
3R | 32079331 | 3R | 5267262..5267402 | 535..395 | 705 | 100 | Minus |
3R | 32079331 | 3R | 5267117..5267202 | 619..534 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:10:54 has no hits.
BO08313.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:42 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 60..978 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:49 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 60..978 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:46:43 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 661..1579 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:37:19 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 661..1579 | 15..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:37:19 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5267462..5267836 | 20..394 | 100 | -> | Minus |
3R | 5265599..5265637 | 896..934 | 97 | -> | Minus |
3R | 5266753..5267032 | 616..895 | 100 | -> | Minus |
3R | 5267121..5267201 | 535..615 | 100 | -> | Minus |
3R | 5267263..5267402 | 395..534 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:46:43 Download gff for
BO08313.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092843..1092923 | 535..615 | 100 | -> | Minus |
arm_3R | 1092985..1093124 | 395..534 | 100 | -> | Minus |
arm_3R | 1092475..1092754 | 616..895 | 100 | -> | Minus |
arm_3R | 1091321..1091359 | 896..934 | 97 | -> | Minus |
arm_3R | 1093184..1093558 | 20..394 | 100 | -> | Minus |
BO08313.5prime Sequence
963 bp (797 high quality bases) assembled on 2006-01-06
> BO08313.5prime
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAAGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCCGGTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTC
BO08313.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31543-PA | 978 | Hph-RA | 1..947 | 17..963 | 4660 | 99.6 | Plus |
CG31543-PC | 1437 | Hph-RC | 557..1406 | 114..963 | 4175 | 99.6 | Plus |
CG31543-PB | 837 | Hph-RB | 1..806 | 158..963 | 3955 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 15:58:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 602..1548 | 17..963 | 4690 | 99.7 | Plus |
Hph-RD | 3171 | CG44015-RD | 1085..1934 | 114..963 | 4205 | 99.6 | Plus |
Hph-RC | 2496 | CG44015-RC | 1085..1934 | 114..963 | 4205 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 15:58:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267809 | 615..963 | 1700 | 99.1 | Plus |
3R | 32079331 | 3R | 5266752..5267032 | 114..394 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 475..615 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5265540..5265637 | 17..114 | 490 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 391..476 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 15:58:06 has no hits.
BO08313.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:43 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-PA | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:36:50 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31543-PA | 1..947 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:10:52 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 591..1548 | 7..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:31:11 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 591..1548 | 7..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:31:11 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5265529..5265637 | 7..114 | 96 | -> | Plus |
3R | 5266753..5267032 | 115..394 | 100 | -> | Plus |
3R | 5267121..5267201 | 395..475 | 100 | -> | Plus |
3R | 5267263..5267402 | 476..615 | 100 | -> | Plus |
3R | 5267462..5267809 | 616..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:10:52 Download gff for
BO08313.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1091251..1091359 | 7..114 | 96 | -> | Plus |
arm_3R | 1092475..1092754 | 115..394 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 395..475 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 476..615 | 100 | -> | Plus |
arm_3R | 1093184..1093531 | 616..963 | 99 | | Plus |
BO08313.complete Sequence
1009 bp (1009 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631148
> BO08313.complete
GAAGTTATCAGTCGACATGATAACCTCCACGACCACGGACTACAAAAACT
TTTTTAAACACTCGGCACATCCTGCCAATGCTGAGCAGTACTTTCGGGAA
CTTTTGGACAAGCGTGAGCGCCGCTATGAGGATCTGTGCCGTAACATCAT
CAGCGACATGAACCAGTATGGTCTGTCCGTGGTGGACGACTTCCTGGGGA
TGGAGACGGGCCTGAAGATCCTCAACGAGGTTCGAAGCATGTACAACGCA
GGAGCCTTCCAGGATGGCCAAGTGGTGACCAACCAGACGCCCGATGCACC
CGCGGTGCGCGGTGACAAGATCCGAGGCGATAAGATCAAGTGGGTTGGTG
GCAATGAGCCGGGCTGCAGCAATGTCTGGTATCTGACCAATCAGATTGAC
TCTGTGGTGTATCGTGTTAACACGATGAAGGATAATGGCATCTTGGGCAA
CTACCACATCAGGGAGCGCACGAGGGCAATGGTCGCTTGTTATCCGGGAT
CGGGAACTCACTACGTCATGCATGTGGACAATCCCCAAAAGGATGGCCGC
GTTATAACGGCCATATACTACCTGAATATCAACTGGGATGCGCGGGAAAG
TGGCGGCATTCTGCGAATTCGGCCAACACCCGGAACCACAGTGGCGGATA
TTGAGCCCAAGTTTGATCGCCTGATATTCTTCTGGTCTGACATTCGGAAT
CCCCACGAAGTGCAGCCCGCTCACCGTACCCGCTATGCCATCACCGTCTG
GTACTTCGATGCCAAGGAACGCGAGGAGGCCCTCATTAGGGCCAAGCTGG
AAAACAGCAAGACGAACAATCTGGCAGCTCAAGCCCAAGCCCAACAGGCT
GAACCAGACTCCACCACCACACCACCCGCAGCACCAGCTTCATCCGCATC
CAGTCTGCCGGTTAGCATGTCCACGGGAACGGGAGCGCTGAACGCCAATG
TGTCGAGTAATTCCTGCGCCACCAGCAGCGAAATATGCACGGCAAGCTTT
CTAGACCAT
BO08313.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:12:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 978 | CG44015-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Hph-RD | 1437 | CG44015-PD | 557..1434 | 114..991 | 4390 | 100 | Plus |
Hph-RC | 1437 | CG44015-PC | 557..1434 | 114..991 | 4390 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:12:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-RA | 2337 | CG44015-RA | 602..1576 | 17..991 | 4875 | 100 | Plus |
Hph-RD | 3171 | CG44015-RD | 1085..1962 | 114..991 | 4390 | 100 | Plus |
Hph-RC | 2496 | CG44015-RC | 1085..1962 | 114..991 | 4390 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5267461..5267837 | 615..991 | 1885 | 100 | Plus |
3R | 32079331 | 3R | 5266752..5267032 | 114..394 | 1405 | 100 | Plus |
3R | 32079331 | 3R | 5267262..5267402 | 475..615 | 705 | 100 | Plus |
3R | 32079331 | 3R | 5265540..5265637 | 17..114 | 490 | 100 | Plus |
3R | 32079331 | 3R | 5267117..5267202 | 391..476 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:12:09 has no hits.
BO08313.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:05 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 1..978 | 17..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:23 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 588..1576 | 7..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:49:14 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 602..1576 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:06 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 588..1576 | 7..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:13:08 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Hph-RA | 602..1576 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:13:08 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5265540..5265637 | 17..114 | 100 | -> | Plus |
3R | 5266753..5267032 | 115..394 | 100 | -> | Plus |
3R | 5267121..5267201 | 395..475 | 100 | -> | Plus |
3R | 5267263..5267402 | 476..615 | 100 | -> | Plus |
3R | 5267462..5267837 | 616..993 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:49:14 Download gff for
BO08313.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1092475..1092754 | 115..394 | 100 | -> | Plus |
arm_3R | 1092843..1092923 | 395..475 | 100 | -> | Plus |
arm_3R | 1091262..1091359 | 17..114 | 100 | -> | Plus |
arm_3R | 1092985..1093124 | 476..615 | 100 | -> | Plus |
arm_3R | 1093184..1093559 | 616..993 | 99 | | Plus |
BO08313.pep Sequence
Translation from 16 to 1009
> BO08313.pep
MITSTTTDYKNFFKHSAHPANAEQYFRELLDKRERRYEDLCRNIISDMNQ
YGLSVVDDFLGMETGLKILNEVRSMYNAGAFQDGQVVTNQTPDAPAVRGD
KIRGDKIKWVGGNEPGCSNVWYLTNQIDSVVYRVNTMKDNGILGNYHIRE
RTRAMVACYPGSGTHYVMHVDNPQKDGRVITAIYYLNINWDARESGGILR
IRPTPGTTVADIEPKFDRLIFFWSDIRNPHEVQPAHRTRYAITVWYFDAK
EREEALIRAKLENSKTNNLAAQAQAQQAEPDSTTTPPAAPASSASSLPVS
MSTGTGALNANVSSNSCATSSEICTASFLDH
BO08313.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Hph-PA | 325 | CG44015-PA | 1..325 | 1..325 | 1719 | 100 | Plus |
Hph-PD | 478 | CG44015-PD | 187..478 | 34..325 | 1543 | 100 | Plus |
Hph-PC | 478 | CG44015-PC | 187..478 | 34..325 | 1543 | 100 | Plus |
Hph-PB | 278 | CG44015-PB | 1..278 | 48..325 | 1468 | 100 | Plus |