Clone Sequence Records
BO08318.3prime Sequence
942 bp (766 high quality bases) assembled on 2006-01-06
> BO08318.3prime
ATGGTCTAGAAAGCTTGCAAACTCCATGTCTTCTCGCTGTAGTCTTCCAT
TGTCAGGATCGTCAATAGCGGCAGTTAAAGTGTCCAACAAATCGTCGCCC
TTAGTTACTTCCAAATTAAGTTTGTTATACGGACCACTTGCGCTACTTAG
CGGACTAAGATTTCTGGGAACACCTTCGATGGCAAATGAAGTCCACACAT
CGACCATTTTCTGAGACATCTGAGTGTCCTGCCCCTCCAGGGGATGCGTG
GCGAAGAGGTAGATGTTGTCGTTCGAGTGATGCACTCCTCCATTGAAGGG
ATAGTGCGAGTTGCCGAACTCATATCCAAATCGAGTGTATGTTCCCTCGT
ACTCAAAACTGTAGACGTAAACTGGCGTGGACCGTTGCTGGGTGTACATT
TTGGTAGCCAGAGTTATTACCGGGGACTTCATGAAGATGTTCGTAGTGAG
ATCGAAGTACGAGGACACTGCTGCACTATGATCATGACTGTTAAGCGCCT
GAGGCTTAAAGAGCAACCGATTTAATATGTTATCCGTGAGTCCCGATGTG
TCATTGACCAGATCATTGATACCCTGGGAAAACTGACGGACACTTAATGA
ACTCACATTGGCCACCTTTGCAGCCAGCGCATCATAATAGCTTGCTAGCA
CAAAGGAACCATCGTGTTGAGTGAATCCTGTCAGAATAGGAATCTGTCTG
CGATAGCTTTTCACCAGCTCACTGGGCTGTTGTGGGAGGATGCCGTGAAG
GTCTCCAACAATCGGCGAANAGGATTCTGAGGCCGTGGCCTTTAGAATGT
CTATAACTTTCGCTTTTTGAATACACTTCACAAGCTGATCGTGTTGCTCA
CAGCCAGAACATCCCAACTGAATACAGATACGTCTAGATTGTGCCTTCGG
ATCCTTTGTGATTTGCCAGCTGGCGAAGATCGAACCTGACTG
BO08318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7529-PA | 1680 | CG7529-RA | 790..1677 | 906..19 | 4421 | 99.8 | Minus |
| CG7529-PA | 1680 | CG7529-RA | 754..780 | 942..916 | 135 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 798..1721 | 942..19 | 4549 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21503422..21503853 | 450..19 | 2160 | 100 | Minus |
| 3L | 28110227 | 3L | 21502815..21503116 | 942..641 | 1439 | 98.3 | Minus |
| 3L | 28110227 | 3L | 21503173..21503363 | 641..451 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:11:16 has no hits.
BO08318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:52 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-PA | 754..1680 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:02 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-PA | 754..1680 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:48:15 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 798..1724 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:53:03 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 798..1724 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 00:53:03 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21502815..21503115 | 642..942 | 98 | -> | Minus |
| 3L | 21503173..21503363 | 451..641 | 100 | -> | Minus |
| 3L | 21503422..21503856 | 15..450 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:48:15 Download gff for
BO08318.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21495915..21496215 | 642..942 | 98 | -> | Minus |
| arm_3L | 21496273..21496463 | 451..641 | 100 | -> | Minus |
| arm_3L | 21496522..21496956 | 15..450 | 99 | | Minus |
BO08318.5prime Sequence
950 bp (905 high quality bases) assembled on 2006-01-06
> BO08318.5prime
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAANGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTGAGCAACACGATCAGCTTGTGAAGTGTATTCAAAAAGC
GAAAGTTATAGACATTCTAAGGCCACGGCCTCAAAATCCTTTTCGCCGAT
BO08318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7529-PA | 1680 | CG7529-RA | 1..904 | 17..920 | 4501 | 99.8 | Plus |
| CG7529-PA | 1680 | CG7529-RA | 904..935 | 919..950 | 135 | 96.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 45..979 | 17..950 | 4624 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21502464..21502996 | 419..950 | 2589 | 99.4 | Plus |
| 3L | 28110227 | 3L | 21501465..21501722 | 17..274 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 21502165..21502309 | 274..418 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:37:26 has no hits.
BO08318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:53 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-PA | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:03 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-PA | 1..935 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:10 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 36..979 | 8..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:11 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 36..979 | 8..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:11 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21501456..21501722 | 8..274 | 98 | -> | Plus |
| 3L | 21502166..21502309 | 275..418 | 100 | -> | Plus |
| 3L | 21502464..21502996 | 419..950 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:10 Download gff for
BO08318.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21494556..21494822 | 8..274 | 98 | -> | Plus |
| arm_3L | 21495266..21495409 | 275..418 | 100 | -> | Plus |
| arm_3L | 21495564..21496096 | 419..950 | 99 | | Plus |
BO08318.complete Sequence
1711 bp (1711 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631149
> BO08318.complete
GAAGTTATCAGTCGACATGCGTAGACGCGGCGTATACGTGATGCTGACGC
TGTGCGGGGTTTTAACCGCTGGGCTAACCGCCTTTCTTGTGATATTCCTC
ACCGGCGGCCAGGGTGCCGATGCGTCCGAAACAGCTACGGTGACAGTGGA
ACTGTATAATGGCCAGGGGACGGTTCTTGGCAACTATGCCTACACAGCCT
GGACGGATCGAGCCTTTATGCAGTTTCGGGGCATCCCCTTTGCCGAACCA
CCAATAGAGGAACTACGTTTTCGGCCACCTGTGGCGCGCTCACCATGGAC
AGGCACCCTCAACGCACTGAACTTTGGACAACGCTGCCCGGTGATAACAA
ATCTAGATAGTCAGATGTCTGATGCGGAACTCGAAGATTGCCTCACTCTG
TCGGTATACACTAAAAATCTTTCTGCTAGCCAGCCTGTAATGTTTTATAT
CTACGGCGGCGGCTTTTACAATGGCTCCTCCGAGGACCACCCACCGAACT
ACCTTCTGGAAAAGGATGTTGTCCTAGTTGTACCTCAGTACCGAGTCGGA
GCCCTCGGCTGGCTATCGACCTACACGGAAGAGCTGCCCGGCAATGCGCC
CATAGCCGATATCCTTATGGCCCTCGACTGGGTGCAAATGCACATAAGTA
GCTTTGGCGGTGACCCTCAGAAGGTTACCATTTTTGGGCAGAGTGCCGGC
GCTGGAGTAGCCAGTTCCTTGCTGCTGAGTCCCAAAACCGGCGACAATAT
GTTCAAGAGAGCGATTGTGCAGTCAGGTTCGATCTTCGCCAGCTGGGCAA
TCAACAAGGATCCGAAGGCACAATCTAGACGTATCTGTATTCAGTTGGGA
TGTTCTGGCTGTGAGCAACACGATCAGCTTGTGAAGTGTATTCAAAAAGC
GAAAGTTATAGACATTCTAAAGGCCACGGCCTCAGAATCCTTTTCGCCGA
TTGTTGGAGACCTTCACGGCATCCTCCCACAACAGCCCAGTGAGCTGGTG
AAAAGCTATCGCAGACAGATTCCTATTCTGACAGGATTCACTCAACACGA
TGGTTCCTTTGTGCTAGCAAGCTATTATGATGCGCTGGCTGCAAAGGTGG
CCAATGTGAGTTCATTAAGTGTCCGTCAGTTTTCCCAGGGTATCAATGAT
CTGGTCAATGACACATCGGGACTCACGGATAACATATTAAATCGGTTGCT
CTTTAAGCCTCAGGCGCTTAACAGTCATGATCATAGTGCAGCAGTGTCCT
CGTACTTCGATCTCACTACGAACATCTTCATGAAGTCCCCGGTAATAACT
CTGGCTACCAAAATGTACACCCAGCAACGGTCCACGCCAGTTTACGTCTA
CAGTTTTGAGTACGAGGGAACATACACTCGATTTGGATATGAGTTCGGCA
ACTCGCACTATCCCTTCAATGGAGGAGTGCATCACTCGAACGACAACATC
TACCTCTTCGCCACGCATCCCCTGGAGGGGCAGGACACTCAGATGTCTCA
GAAAATGGTCGATGTGTGGACTTCATTTGCCATCGAAGGTGTTCCCAGAA
ATCTTAGTCCGCTAAGTAGCGCAAGTGGTCCGTATAACAAACTTAATTTG
GAAGTAACTAAGGGCGACGATTTGTTGGACACTTTAACTGCCGCTATTGA
CGATCCTGACAATGGAAGACTACAGCGAGAAGACATGGAGTTTGCAAGCT
TTCTAGACCAT
BO08318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:52:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1680 | CG7529-PA | 1..1677 | 17..1693 | 8385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-RA | 1827 | CG7529-RA | 45..1721 | 17..1693 | 8385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:52:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21502464..21503116 | 419..1071 | 3265 | 100 | Plus |
| 3L | 28110227 | 3L | 21503422..21503853 | 1262..1693 | 2160 | 100 | Plus |
| 3L | 28110227 | 3L | 21501465..21501722 | 17..274 | 1290 | 100 | Plus |
| 3L | 28110227 | 3L | 21503173..21503363 | 1071..1261 | 955 | 100 | Plus |
| 3L | 28110227 | 3L | 21502165..21502309 | 274..418 | 725 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:52:48 has no hits.
BO08318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:53 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-RA | 1..1680 | 17..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:19 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-RA | 28..1716 | 8..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:06 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 45..1721 | 17..1695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:53 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7529-RA | 28..1716 | 8..1697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:30:11 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Est-Q-RA | 45..1721 | 17..1695 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:30:11 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21501465..21501722 | 17..274 | 100 | -> | Plus |
| 3L | 21502166..21502309 | 275..418 | 100 | -> | Plus |
| 3L | 21502464..21503115 | 419..1070 | 100 | -> | Plus |
| 3L | 21503173..21503363 | 1071..1261 | 100 | -> | Plus |
| 3L | 21503422..21503853 | 1262..1695 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:06 Download gff for
BO08318.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21494565..21494822 | 17..274 | 100 | -> | Plus |
| arm_3L | 21495266..21495409 | 275..418 | 100 | -> | Plus |
| arm_3L | 21495564..21496215 | 419..1070 | 100 | -> | Plus |
| arm_3L | 21496273..21496463 | 1071..1261 | 100 | -> | Plus |
| arm_3L | 21496522..21496953 | 1262..1695 | 99 | | Plus |
BO08318.pep Sequence
Translation from 16 to 1711
> BO08318.pep
MRRRGVYVMLTLCGVLTAGLTAFLVIFLTGGQGADASETATVTVELYNGQ
GTVLGNYAYTAWTDRAFMQFRGIPFAEPPIEELRFRPPVARSPWTGTLNA
LNFGQRCPVITNLDSQMSDAELEDCLTLSVYTKNLSASQPVMFYIYGGGF
YNGSSEDHPPNYLLEKDVVLVVPQYRVGALGWLSTYTEELPGNAPIADIL
MALDWVQMHISSFGGDPQKVTIFGQSAGAGVASSLLLSPKTGDNMFKRAI
VQSGSIFASWAINKDPKAQSRRICIQLGCSGCEQHDQLVKCIQKAKVIDI
LKATASESFSPIVGDLHGILPQQPSELVKSYRRQIPILTGFTQHDGSFVL
ASYYDALAAKVANVSSLSVRQFSQGINDLVNDTSGLTDNILNRLLFKPQA
LNSHDHSAAVSSYFDLTTNIFMKSPVITLATKMYTQQRSTPVYVYSFEYE
GTYTRFGYEFGNSHYPFNGGVHHSNDNIYLFATHPLEGQDTQMSQKMVDV
WTSFAIEGVPRNLSPLSSASGPYNKLNLEVTKGDDLLDTLTAAIDDPDNG
RLQREDMEFASFLDH
BO08318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Est-Q-PA | 559 | CG7529-PA | 1..559 | 1..559 | 2917 | 100 | Plus |
| CG9289-PA | 674 | CG9289-PA | 67..609 | 31..550 | 711 | 33.4 | Plus |
| CG9287-PA | 625 | CG9287-PA | 24..569 | 32..550 | 658 | 30.6 | Plus |
| Glt-PD | 1026 | CG9280-PD | 68..562 | 51..523 | 513 | 28.8 | Plus |
| Glt-PA | 1026 | CG9280-PA | 68..562 | 51..523 | 513 | 28.8 | Plus |
