Clone Sequence Records
BO08320.3prime Sequence
954 bp (797 high quality bases) assembled on 2006-01-06
> BO08320.3prime
ATGGTCTAGAAAGCTTGCTTTTACCCTTTTCGATAGCTTCACTTTGATAT
TCTCTTGTGTGCGCAGCACGATTCCGTTCTCAAAAGTGAGATCCTCCAAC
TGGGTGGCGGGCAGGAGTTTAAAGTTCCTAATCACAGCGGCCAGGAGCAC
CTTCATCTCCAGAATGGCAAACTTCTGACCAATGCAATTCCTCTGGCCTG
CACTAAAAGGCACATATGCAAAAGGATGACGATTCACTGTGTTCTCCGGT
AGAAATCTGTCTGGCTGGAACAGATCTGGTTTCGGGAAATGTCGCGGATC
TCTCATTATGTCGTATATGTGGATGCTGATCTGGGTGTCCTTTGGCATCA
CCATTCCATTCACCACAGTCTCCTCCACGCATTGGCGCCCAATAAATGGC
ACTGATGGAAACATTCTCAGCGATTCCTTTATCACACATTCCAAGTAGAC
TAGTTTGTTGAACTGAAACATACTGATGTCATCGCTGTCCTCGGGAAGAT
TTTCCACCTCCTCATAGCACTTCTTCTGGACATCCTCGTGGAGAGCCAGC
ATCAATAGGGTAAATATTAGACAGGTGGACGTAGTATCGTAACCCTCGAA
CATAAAGGTATTGACCTCATCGCAGATACCCTGATGATCGATCTGACCAT
CTGCTTCGGCTGCTAACAGGGTATCCAACATGGCGTATCGCTGCTTCCTG
CCAAATTCATCGACTTCTCCAAGTTGTTTCTGCTGGAATTGCTGCCTTTT
TCGTTCGATAATGCGACTGGAGAAGTCGTGAACTATTCGAAGATTCTGCA
AATGCTTTCTATAGTCTCCGTAAACGAAGAAATACCAGTTGTAGTACATC
AGCGGATTGCACACGCGTTGAAATAGAACTTCCTCGATGGCATGGATGGC
CTTTCTATATTCGTTGCCCTCCGACATGTCATCCAGCTTCAACCCAGAGC
AGTT
BO08320.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14032-PA | 1530 | Cyp4ac1-RA | 605..1527 | 941..19 | 4590 | 99.8 | Minus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..999 | 711..508 | 895 | 97.5 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 1393..1487 | 153..59 | 350 | 94.7 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 796..867 | 750..679 | 210 | 91.6 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 902..962 | 644..584 | 205 | 93.4 | Minus |
CG14031-PA | 1530 | Cyp4ac3-RA | 1211..1247 | 335..299 | 135 | 94.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 624..1560 | 954..19 | 4645 | 99.8 | Minus |
Cyp4ac3-RA | 1606 | CG14031-RA | 661..1556 | 933..38 | 1825 | 80.4 | Minus |
Cyp4ac2-RB | 1709 | CG17970-RB | 878..1527 | 711..62 | 1600 | 83.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264857..5265793 | 954..19 | 4620 | 99.8 | Minus |
2L | 23513712 | 2L | 5269384..5270279 | 933..38 | 1810 | 80.1 | Minus |
2L | 23513712 | 2L | 5267624..5268273 | 711..62 | 1600 | 83.1 | Minus |
3L | 28110227 | 3L | 2476536..2476609 | 149..222 | 190 | 83.8 | Plus |
Blast to na_te.dros performed 2015-02-12 18:36:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5065..5144 | 915..837 | 118 | 62.5 | Minus |
TART-C | 11124 | TART-C TARTC 11124bp | 6521..6600 | 915..837 | 118 | 62.5 | Minus |
BO08320.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:56 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 591..1530 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:08 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 591..1530 | 16..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:47 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 624..1560 | 19..954 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:09:22 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 624..1560 | 19..954 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:22 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264857..5265793 | 19..954 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:47 Download gff for
BO08320.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264857..5265793 | 19..954 | 99 | | Minus |
BO08320.5prime Sequence
892 bp (829 high quality bases) assembled on 2006-01-06
> BO08320.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACC
BO08320.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14032-PA | 1530 | Cyp4ac1-RA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG14031-PA | 1530 | Cyp4ac3-RA | 796..867 | 812..883 | 210 | 91.6 | Plus |
CG17970-PA | 1494 | Cyp4ac2-RA | 796..828 | 851..883 | 140 | 96.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..909 | 17..892 | 4380 | 100 | Plus |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..920 | 17..888 | 1255 | 76.8 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 193..919 | 166..892 | 525 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264855..5265142 | 605..892 | 1440 | 100 | Plus |
2L | 23513712 | 2L | 5264295..5264499 | 218..422 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264235 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5269360..5269643 | 605..888 | 580 | 80.3 | Plus |
2L | 23513712 | 2L | 5264696..5264796 | 505..605 | 505 | 100 | Plus |
2L | 23513712 | 2L | 5264557..5264644 | 422..509 | 425 | 98.9 | Plus |
2L | 23513712 | 2L | 5268546..5268728 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5268823..5269000 | 242..419 | 290 | 77.5 | Plus |
2L | 23513712 | 2L | 5266748..5266896 | 272..420 | 250 | 77.9 | Plus |
Blast to na_te.dros performed 2015-02-11 14:27:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 5065..5144 | 647..725 | 118 | 62.5 | Plus |
TART-C | 11124 | TART-C TARTC 11124bp | 6521..6600 | 647..725 | 118 | 62.5 | Plus |
BO08320.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:57 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:09 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14032-PA | 1..876 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:38:35 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..909 | 17..892 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:36 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..909 | 17..892 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:36 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264856..5265142 | 606..892 | 100 | | Plus |
2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:38:35 Download gff for
BO08320.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
arm_2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
arm_2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
arm_2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
arm_2L | 5264856..5265142 | 606..892 | 100 | | Plus |
BO08320.complete Sequence
1561 bp (1561 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631150
> BO08320.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGTTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGGGTTACGATACTACGTCCACCTGTCTAATATTT
ACCCTATTGATGCTGGCTCTCCACGAGGATGTCCAGAAGAAGTGCTATGA
GGAGGTGGAAAATCTTCCCGAGGACAGCGATGACATCAGTATGTTTCAGT
TCAACAAACTAGTCTACTTGGAATGTGTGATAAAGGAATCGCTGAGAATG
TTTCCATCAGTGCCATTTATTGGGCGCCAATGCGTGGAGGAGACTGTGGT
GAATGGAATGGTGATGCCAAAGGACACCCAGATCAGCATCCACATATACG
ACATAATGAGAGATCCGCGACATTTCCCGAAACCAGATCTGTTCCAGCCA
GACAGATTTCTACCGGAGAACACAGTGAATCGTCATCCTTTTGCATATGT
GCCTTTTAGTGCAGGCCAGAGGAATTGCATTGGTCAGAAGTTTGCCATTC
TGGAGATGAAGGTGCTCCTGGCCGCTGTGATTAGGAACTTTAAACTCCTG
CCCGCCACCCAGTTGGAGGATCTCACTTTTGAGAACGGAATCGTGCTGCG
CACACAAGAGAATATCAAAGTGAAGCTATCGAAAAGGGTAAAAGCAAGCT
TTCTAGACCAT
BO08320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1530 | CG14032-PA | 1..1527 | 17..1543 | 7635 | 100 | Plus |
Cyp4ac3-RA | 1530 | CG14031-PA | 1..1508 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1536 | CG17970-PB | 153..1487 | 166..1500 | 1935 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-RA | 1666 | CG14032-RA | 34..1560 | 17..1543 | 7635 | 100 | Plus |
Cyp4ac3-RA | 1606 | CG14031-RA | 49..1556 | 17..1524 | 2500 | 77.7 | Plus |
Cyp4ac2-RB | 1709 | CG17970-RB | 193..1527 | 166..1500 | 1935 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5264855..5265793 | 605..1543 | 4695 | 100 | Plus |
2L | 23513712 | 2L | 5269360..5270279 | 605..1524 | 1855 | 80.1 | Plus |
2L | 23513712 | 2L | 5267624..5268273 | 851..1500 | 1600 | 83.1 | Plus |
2L | 23513712 | 2L | 5264295..5264499 | 218..422 | 1025 | 100 | Plus |
2L | 23513712 | 2L | 5264034..5264235 | 17..218 | 1010 | 100 | Plus |
2L | 23513712 | 2L | 5264696..5264796 | 505..605 | 505 | 100 | Plus |
2L | 23513712 | 2L | 5264557..5264644 | 422..509 | 425 | 98.9 | Plus |
2L | 23513712 | 2L | 5268546..5268728 | 17..199 | 300 | 77.6 | Plus |
2L | 23513712 | 2L | 5268823..5269000 | 242..419 | 290 | 77.5 | Plus |
2L | 23513712 | 2L | 5266748..5266896 | 272..420 | 250 | 77.9 | Plus |
3L | 28110227 | 3L | 2476536..2476609 | 1413..1340 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:05:50 has no hits.
BO08320.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:29 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 1..1530 | 17..1546 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:59 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1560 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:40 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1556 | 17..1539 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:29 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1560 | 17..1543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:13 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4ac1-RA | 34..1556 | 17..1539 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
2L | 5264856..5265789 | 606..1539 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:40 Download gff for
BO08320.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5264034..5264235 | 17..218 | 100 | -> | Plus |
arm_2L | 5264296..5264499 | 219..422 | 100 | -> | Plus |
arm_2L | 5264558..5264639 | 423..504 | 100 | -> | Plus |
arm_2L | 5264696..5264796 | 505..605 | 100 | -> | Plus |
arm_2L | 5264856..5265789 | 606..1539 | 100 | | Plus |
BO08320.pep Sequence
Translation from 16 to 1561
> BO08320.pep
MWIALLGIPILLAVLTLLLKHINKTYFILSLTKRVRTEDGSPLESKVAIM
PGKTRFGNNLDILNFTPASVFNFVRESTAKAKGQNYLWYFLYAPMYNVVR
PEEAEEVFQSTKLITKNVVYELIRPFLGDGLLISTDHKWHSRRKALTPAF
HFNVLQSFLGIFKEECKKFLNVLEKNLDAELELNQVIPPFTLNNICETAL
GVKLDDMSEGNEYRKAIHAIEEVLIQRVCNPLMYYNWYFFVYGDYRKHLQ
NLRIVHDFSSRIIERKRQQFQQKQLGEVDEFGRKQRYAMLDTLLAAEADG
QIDHQGICDEVNTFMFEGYDTTSTCLIFTLLMLALHEDVQKKCYEEVENL
PEDSDDISMFQFNKLVYLECVIKESLRMFPSVPFIGRQCVEETVVNGMVM
PKDTQISIHIYDIMRDPRHFPKPDLFQPDRFLPENTVNRHPFAYVPFSAG
QRNCIGQKFAILEMKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQENI
KVKLSKRVKASFLDH
BO08320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4ac1-PA | 509 | CG14032-PA | 1..509 | 1..509 | 2657 | 100 | Plus |
Cyp4ac3-PA | 509 | CG14031-PA | 1..509 | 1..509 | 2142 | 77 | Plus |
Cyp4ac2-PB | 511 | CG17970-PB | 6..508 | 5..507 | 2068 | 75.1 | Plus |
Cyp4p1-PA | 513 | CG10842-PA | 3..512 | 5..507 | 1183 | 47.5 | Plus |
Cyp4p3-PA | 515 | CG10843-PA | 12..514 | 14..507 | 1136 | 45.3 | Plus |