Clone BO08320 Report

Search the DGRC for BO08320

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:20
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4ac1-RA
Protein status:BO08320.pep: validated full length
Sequenced Size:1561

Clone Sequence Records

BO08320.3prime Sequence

954 bp (797 high quality bases) assembled on 2006-01-06

> BO08320.3prime
ATGGTCTAGAAAGCTTGCTTTTACCCTTTTCGATAGCTTCACTTTGATAT
TCTCTTGTGTGCGCAGCACGATTCCGTTCTCAAAAGTGAGATCCTCCAAC
TGGGTGGCGGGCAGGAGTTTAAAGTTCCTAATCACAGCGGCCAGGAGCAC
CTTCATCTCCAGAATGGCAAACTTCTGACCAATGCAATTCCTCTGGCCTG
CACTAAAAGGCACATATGCAAAAGGATGACGATTCACTGTGTTCTCCGGT
AGAAATCTGTCTGGCTGGAACAGATCTGGTTTCGGGAAATGTCGCGGATC
TCTCATTATGTCGTATATGTGGATGCTGATCTGGGTGTCCTTTGGCATCA
CCATTCCATTCACCACAGTCTCCTCCACGCATTGGCGCCCAATAAATGGC
ACTGATGGAAACATTCTCAGCGATTCCTTTATCACACATTCCAAGTAGAC
TAGTTTGTTGAACTGAAACATACTGATGTCATCGCTGTCCTCGGGAAGAT
TTTCCACCTCCTCATAGCACTTCTTCTGGACATCCTCGTGGAGAGCCAGC
ATCAATAGGGTAAATATTAGACAGGTGGACGTAGTATCGTAACCCTCGAA
CATAAAGGTATTGACCTCATCGCAGATACCCTGATGATCGATCTGACCAT
CTGCTTCGGCTGCTAACAGGGTATCCAACATGGCGTATCGCTGCTTCCTG
CCAAATTCATCGACTTCTCCAAGTTGTTTCTGCTGGAATTGCTGCCTTTT
TCGTTCGATAATGCGACTGGAGAAGTCGTGAACTATTCGAAGATTCTGCA
AATGCTTTCTATAGTCTCCGTAAACGAAGAAATACCAGTTGTAGTACATC
AGCGGATTGCACACGCGTTGAAATAGAACTTCCTCGATGGCATGGATGGC
CTTTCTATATTCGTTGCCCTCCGACATGTCATCCAGCTTCAACCCAGAGC
AGTT

BO08320.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG14032-PA 1530 Cyp4ac1-RA 605..1527 941..19 4590 99.8 Minus
CG17970-PA 1494 Cyp4ac2-RA 796..999 711..508 895 97.5 Minus
CG14031-PA 1530 Cyp4ac3-RA 1393..1487 153..59 350 94.7 Minus
CG14031-PA 1530 Cyp4ac3-RA 796..867 750..679 210 91.6 Minus
CG14031-PA 1530 Cyp4ac3-RA 902..962 644..584 205 93.4 Minus
CG14031-PA 1530 Cyp4ac3-RA 1211..1247 335..299 135 94.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:45
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 624..1560 954..19 4645 99.8 Minus
Cyp4ac3-RA 1606 CG14031-RA 661..1556 933..38 1825 80.4 Minus
Cyp4ac2-RB 1709 CG17970-RB 878..1527 711..62 1600 83.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264857..5265793 954..19 4620 99.8 Minus
2L 23513712 2L 5269384..5270279 933..38 1810 80.1 Minus
2L 23513712 2L 5267624..5268273 711..62 1600 83.1 Minus
3L 28110227 3L 2476536..2476609 149..222 190 83.8 Plus
Blast to na_te.dros performed 2015-02-12 18:36:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5065..5144 915..837 118 62.5 Minus
TART-C 11124 TART-C TARTC 11124bp 6521..6600 915..837 118 62.5 Minus

BO08320.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:56 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 591..1530 16..954 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:08 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 591..1530 16..954 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 03:56:47 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 624..1560 19..954 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:09:22 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 624..1560 19..954 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:09:22 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5264857..5265793 19..954 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 03:56:47 Download gff for BO08320.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264857..5265793 19..954 99   Minus

BO08320.5prime Sequence

892 bp (829 high quality bases) assembled on 2006-01-06

> BO08320.5prime
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACC

BO08320.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG14032-PA 1530 Cyp4ac1-RA 1..876 17..892 4380 100 Plus
CG14031-PA 1530 Cyp4ac3-RA 796..867 812..883 210 91.6 Plus
CG17970-PA 1494 Cyp4ac2-RA 796..828 851..883 140 96.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:27:59
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 34..909 17..892 4380 100 Plus
Cyp4ac3-RA 1606 CG14031-RA 49..920 17..888 1255 76.8 Plus
Cyp4ac2-RB 1709 CG17970-RB 193..919 166..892 525 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:27:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264855..5265142 605..892 1440 100 Plus
2L 23513712 2L 5264295..5264499 218..422 1025 100 Plus
2L 23513712 2L 5264034..5264235 17..218 1010 100 Plus
2L 23513712 2L 5269360..5269643 605..888 580 80.3 Plus
2L 23513712 2L 5264696..5264796 505..605 505 100 Plus
2L 23513712 2L 5264557..5264644 422..509 425 98.9 Plus
2L 23513712 2L 5268546..5268728 17..199 300 77.6 Plus
2L 23513712 2L 5268823..5269000 242..419 290 77.5 Plus
2L 23513712 2L 5266748..5266896 272..420 250 77.9 Plus
Blast to na_te.dros performed 2015-02-11 14:27:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\TART 8444 Dyak\TART TARTYAK 8444bp 5065..5144 647..725 118 62.5 Plus
TART-C 11124 TART-C TARTC 11124bp 6521..6600 647..725 118 62.5 Plus

BO08320.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:43:57 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:09 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14032-PA 1..876 17..892 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:38:35 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..909 17..892 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:36 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..909 17..892 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:36 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5264856..5265142 606..892 100   Plus
2L 5264034..5264235 17..218 100 -> Plus
2L 5264296..5264499 219..422 100 -> Plus
2L 5264558..5264639 423..504 100 -> Plus
2L 5264696..5264796 505..605 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:38:35 Download gff for BO08320.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264034..5264235 17..218 100 -> Plus
arm_2L 5264296..5264499 219..422 100 -> Plus
arm_2L 5264558..5264639 423..504 100 -> Plus
arm_2L 5264696..5264796 505..605 100 -> Plus
arm_2L 5264856..5265142 606..892 100   Plus

BO08320.complete Sequence

1561 bp (1561 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631150

> BO08320.complete
GAAGTTATCAGTCGACATGTGGATCGCTCTGCTGGGGATCCCGATTTTGT
TGGCGGTCCTAACGCTTCTTCTAAAACACATTAACAAAACCTACTTTATA
CTTTCATTAACGAAGCGTGTGCGAACCGAGGATGGCAGTCCATTGGAAAG
CAAAGTGGCCATAATGCCGGGAAAAACGCGATTTGGCAACAACTTGGATA
TCTTGAACTTTACGCCGGCTAGTGTTTTTAATTTTGTGCGCGAGTCCACG
GCCAAGGCCAAGGGTCAGAATTATCTGTGGTATTTTCTATATGCACCCAT
GTATAATGTGGTTCGACCCGAGGAAGCTGAGGAGGTATTCCAGAGCACCA
AGCTGATAACGAAGAACGTGGTTTACGAACTGATTAGACCATTTCTGGGA
GACGGACTCCTGATAAGCACGGATCACAAATGGCATTCCAGACGAAAGGC
TTTAACGCCCGCCTTTCACTTCAATGTCCTGCAGTCATTCCTGGGTATTT
TCAAGGAAGAGTGCAAGAAGTTCCTTAACGTTTTAGAGAAAAATTTAGAT
GCAGAACTGGAGCTTAACCAGGTTATTCCGCCATTTACTTTGAATAATAT
ATGCGAAACTGCTCTGGGTGTGAAGCTGGATGACATGTCGGAGGGCAACG
AATATAGAAAGGCCATCCATGCCATCGAGGAAGTTCTAATTCAACGCGTG
TGCAATCCGCTGATGTACTACAACTGGTATTTCTTCGTTTACGGAGACTA
TAGAAAGCATTTGCAGAATCTTCGAATAGTTCACGACTTCTCCAGTCGCA
TTATCGAACGAAAAAGGCAGCAATTCCAGCAGAAACAACTTGGAGAAGTC
GATGAATTTGGCAGGAAGCAGCGATACGCCATGTTGGATACCCTGTTAGC
AGCCGAAGCAGATGGTCAGATCGATCATCAGGGTATCTGCGATGAGGTCA
ATACCTTTATGTTCGAGGGTTACGATACTACGTCCACCTGTCTAATATTT
ACCCTATTGATGCTGGCTCTCCACGAGGATGTCCAGAAGAAGTGCTATGA
GGAGGTGGAAAATCTTCCCGAGGACAGCGATGACATCAGTATGTTTCAGT
TCAACAAACTAGTCTACTTGGAATGTGTGATAAAGGAATCGCTGAGAATG
TTTCCATCAGTGCCATTTATTGGGCGCCAATGCGTGGAGGAGACTGTGGT
GAATGGAATGGTGATGCCAAAGGACACCCAGATCAGCATCCACATATACG
ACATAATGAGAGATCCGCGACATTTCCCGAAACCAGATCTGTTCCAGCCA
GACAGATTTCTACCGGAGAACACAGTGAATCGTCATCCTTTTGCATATGT
GCCTTTTAGTGCAGGCCAGAGGAATTGCATTGGTCAGAAGTTTGCCATTC
TGGAGATGAAGGTGCTCCTGGCCGCTGTGATTAGGAACTTTAAACTCCTG
CCCGCCACCCAGTTGGAGGATCTCACTTTTGAGAACGGAATCGTGCTGCG
CACACAAGAGAATATCAAAGTGAAGCTATCGAAAAGGGTAAAAGCAAGCT
TTCTAGACCAT

BO08320.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:05:52
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1530 CG14032-PA 1..1527 17..1543 7635 100 Plus
Cyp4ac3-RA 1530 CG14031-PA 1..1508 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1536 CG17970-PB 153..1487 166..1500 1935 76.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:05:53
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-RA 1666 CG14032-RA 34..1560 17..1543 7635 100 Plus
Cyp4ac3-RA 1606 CG14031-RA 49..1556 17..1524 2500 77.7 Plus
Cyp4ac2-RB 1709 CG17970-RB 193..1527 166..1500 1935 76.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:05:49
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5264855..5265793 605..1543 4695 100 Plus
2L 23513712 2L 5269360..5270279 605..1524 1855 80.1 Plus
2L 23513712 2L 5267624..5268273 851..1500 1600 83.1 Plus
2L 23513712 2L 5264295..5264499 218..422 1025 100 Plus
2L 23513712 2L 5264034..5264235 17..218 1010 100 Plus
2L 23513712 2L 5264696..5264796 505..605 505 100 Plus
2L 23513712 2L 5264557..5264644 422..509 425 98.9 Plus
2L 23513712 2L 5268546..5268728 17..199 300 77.6 Plus
2L 23513712 2L 5268823..5269000 242..419 290 77.5 Plus
2L 23513712 2L 5266748..5266896 272..420 250 77.9 Plus
3L 28110227 3L 2476536..2476609 1413..1340 190 83.8 Minus
Blast to na_te.dros performed on 2014-11-28 00:05:50 has no hits.

BO08320.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:29 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 1..1530 17..1546 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:59 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1560 17..1543 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:17:40 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1556 17..1539 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:29 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1560 17..1543 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:13 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4ac1-RA 34..1556 17..1539 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:13 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
2L 5264296..5264499 219..422 100 -> Plus
2L 5264558..5264639 423..504 100 -> Plus
2L 5264696..5264796 505..605 100 -> Plus
2L 5264034..5264235 17..218 100 -> Plus
2L 5264856..5265789 606..1539 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:17:40 Download gff for BO08320.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5264034..5264235 17..218 100 -> Plus
arm_2L 5264296..5264499 219..422 100 -> Plus
arm_2L 5264558..5264639 423..504 100 -> Plus
arm_2L 5264696..5264796 505..605 100 -> Plus
arm_2L 5264856..5265789 606..1539 100   Plus

BO08320.pep Sequence

Translation from 16 to 1561

> BO08320.pep
MWIALLGIPILLAVLTLLLKHINKTYFILSLTKRVRTEDGSPLESKVAIM
PGKTRFGNNLDILNFTPASVFNFVRESTAKAKGQNYLWYFLYAPMYNVVR
PEEAEEVFQSTKLITKNVVYELIRPFLGDGLLISTDHKWHSRRKALTPAF
HFNVLQSFLGIFKEECKKFLNVLEKNLDAELELNQVIPPFTLNNICETAL
GVKLDDMSEGNEYRKAIHAIEEVLIQRVCNPLMYYNWYFFVYGDYRKHLQ
NLRIVHDFSSRIIERKRQQFQQKQLGEVDEFGRKQRYAMLDTLLAAEADG
QIDHQGICDEVNTFMFEGYDTTSTCLIFTLLMLALHEDVQKKCYEEVENL
PEDSDDISMFQFNKLVYLECVIKESLRMFPSVPFIGRQCVEETVVNGMVM
PKDTQISIHIYDIMRDPRHFPKPDLFQPDRFLPENTVNRHPFAYVPFSAG
QRNCIGQKFAILEMKVLLAAVIRNFKLLPATQLEDLTFENGIVLRTQENI
KVKLSKRVKASFLDH

BO08320.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:12
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4ac1-PA 509 CG14032-PA 1..509 1..509 2657 100 Plus
Cyp4ac3-PA 509 CG14031-PA 1..509 1..509 2142 77 Plus
Cyp4ac2-PB 511 CG17970-PB 6..508 5..507 2068 75.1 Plus
Cyp4p1-PA 513 CG10842-PA 3..512 5..507 1183 47.5 Plus
Cyp4p3-PA 515 CG10843-PA 12..514 14..507 1136 45.3 Plus