Clone Sequence Records
BO08324.3prime Sequence
934 bp (834 high quality bases) assembled on 2006-01-06
> BO08324.3prime
ATGGTCTAGAAAGCTTGCAACCCGTCCGGCTGGTGCCAACTGCTTGTCGC
TGAAACGCAGAATGCGCGTCAGCATGGTGGTTATGCAGGGTATCTGCTTC
TGCTGGTGCATCTCCGGAGTGTCCGGGGTGCAGGACTCAAAGTCCACGGC
CACCCGCTGGCACACGAATGTGAGCAGGGTCAGGATGTCCAGCCGCTTGC
CATTGGCCGCCAGTTCGGCGCACAGGCTCTGCATGAACCAGCTGCCGCGG
GTGGTGTTGCGCCACGAATAGAATCCAGGAACCGTCGAGTAGGCGATCAG
AAAGTCGGCGTGCACTGGAATCTTGTAGCTCATCGAGGAGTCGCCATCGG
TTTCCGTCTGAGAACGCTGCATGGTCACTCCGCCATCCAATCTGTCGCCC
TGGCAGGCCTGTATGAAGAACAACTTGGGTTTGCCGGCTAGCGAGGGGCA
GTGATTGGCCGTGAAGAAGCTCCAGATGTTATCCAGCTTGTACTGTGTGT
CCTTGGCGTAGATGTAGCCCATCTCGCCGTGCGACAGGATGGCGACCAGG
ATGCAATCACTATCGCTGTGATTCTGCGACGCTGCATACTCGATTGTCCT
CAAAATGTCCTTGTAGCGGCAGTCCTTGTACACGGTCACTTCGAAGTCCA
GCTGCTTGAGCACCCGAGTCAGATTCTCGCAGTCCACATTGGTTCCCGCG
CGAGACTTCAAGGTGGGCACCTCGAAGTGCTCATGGTTGAAGATCAGTGC
CATTCCGCGGTTCTTGTGGCGCATGTTGTACTCGGCTGCATGGCGGTCGG
TGACCATTTTGGCTACATTCTTACGGTAGCTGGACGAGGGTGAGCTGTAC
CCGTTGGCCAGCTGCCCAATGGCTCCGCTGCCGTAAGGATGCGAGGATCC
TGCGGACAGGCCGCTGCTACCCGCTCCTCCGGAT
BO08324.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7788-PA | 1020 | Ice-RA | 102..1017 | 934..19 | 4530 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:28:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drice-RA | 1927 | CG7788-RA | 342..1257 | 934..19 | 4550 | 99.8 | Minus |
Dcp-1-RA | 1749 | CG5370-RA | 854..1359 | 547..42 | 595 | 75.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:28:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29799999..29800914 | 934..19 | 4550 | 99.8 | Minus |
2R | 25286936 | 2R | 23552592..23552855 | 547..284 | 405 | 76.9 | Minus |
2R | 25286936 | 2R | 23553019..23553157 | 180..42 | 230 | 77.7 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:28:08 has no hits.
BO08324.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:04 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-PA | 102..1020 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:18 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7788-PA | 102..1020 | 16..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:20 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 342..1257 | 19..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:36 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drice-RA | 342..1257 | 19..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:36 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29799999..29800914 | 19..934 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:20 Download gff for
BO08324.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25625721..25626636 | 19..934 | 99 | | Minus |
BO08324.5prime Sequence
857 bp (855 high quality bases) assembled on 2006-01-06
> BO08324.5prime
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGC
BO08324.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7788-PA | 1020 | Ice-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drice-RA | 1927 | CG7788-RA | 240..1081 | 16..857 | 4210 | 100 | Plus |
Dcp-1-RA | 1749 | CG5370-RA | 854..1171 | 505..822 | 435 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29799897..29800738 | 16..857 | 4210 | 100 | Plus |
2R | 25286936 | 2R | 23552592..23552855 | 505..768 | 405 | 76.9 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:58:42 has no hits.
BO08324.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:05 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:19 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7788-PA | 1..841 | 17..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:20 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 240..1081 | 16..857 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:27 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drice-RA | 240..1081 | 16..857 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:27 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29799897..29800738 | 16..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:20 Download gff for
BO08324.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25625619..25626460 | 16..857 | 100 | | Plus |
BO08324.complete Sequence
1051 bp (1051 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631152
> BO08324.complete
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGCGGCTGGACATCCTGACCCTGCTCACATTCGTGTGCCAGCGGGT
GGCCGTGGACTTTGAGTCCTGCACCCCGGACACTCCGGAGATGCACCAGC
AGAAGCAGATACCCTGCATAACCACCATGCTGACGCGCATTCTGCGTTTC
AGCGACAAGCAGTTGGCACCAGCCGGACGGGTTGCAAGCTTTCTAGACCA
T
BO08324.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drice-RA | 1020 | CG7788-PA | 1..1017 | 17..1033 | 5085 | 100 | Plus |
Dcp-1-RA | 972 | CG5370-PA | 444..949 | 505..1010 | 595 | 74.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drice-RA | 1927 | CG7788-RA | 240..1257 | 16..1033 | 5090 | 100 | Plus |
Dcp-1-RA | 1749 | CG5370-RA | 854..1359 | 505..1010 | 595 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29799897..29800914 | 16..1033 | 5090 | 100 | Plus |
2R | 25286936 | 2R | 23552592..23552855 | 505..768 | 405 | 76.9 | Plus |
2R | 25286936 | 2R | 23553019..23553157 | 872..1010 | 230 | 77.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:33:06 has no hits.
BO08324.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:30 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 1..1020 | 17..1036 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:02 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 245..1262 | 16..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:59 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 241..1257 | 17..1035 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:30 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ice-RA | 245..1262 | 16..1033 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:04 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Drice-RA | 241..1257 | 17..1035 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:04 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29799898..29800914 | 17..1035 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:59 Download gff for
BO08324.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25625620..25626636 | 17..1035 | 99 | | Plus |
BO08324.pep Sequence
Translation from 16 to 1051
> BO08324.pep
MDATNNGESADQVGIRVGNPEQPNDHTDALGSVGSGGAGSSGLVAGSSHP
YGSGAIGQLANGYSSPSSSYRKNVAKMVTDRHAAEYNMRHKNRGMALIFN
HEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEY
AASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA
GKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYS
TVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFE
SCTPDTPEMHQQKQIPCITTMLTRILRFSDKQLAPAGRVASFLDH
BO08324.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Drice-PA | 339 | CG7788-PA | 1..339 | 1..339 | 1795 | 100 | Plus |
Dcp-1-PA | 323 | CG5370-PA | 57..316 | 72..331 | 980 | 67.7 | Plus |
Decay-PA | 308 | CG14902-PA | 56..305 | 94..331 | 405 | 35.6 | Plus |
Strica-PB | 527 | CG7863-PB | 317..525 | 98..330 | 232 | 32.5 | Plus |
Strica-PA | 527 | CG7863-PA | 317..525 | 98..330 | 232 | 32.5 | Plus |