Clone BO08324 Report

Search the DGRC for BO08324

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptIce-RA
Protein status:BO08324.pep: validated full length
Sequenced Size:1051

Clone Sequence Records

BO08324.3prime Sequence

934 bp (834 high quality bases) assembled on 2006-01-06

> BO08324.3prime
ATGGTCTAGAAAGCTTGCAACCCGTCCGGCTGGTGCCAACTGCTTGTCGC
TGAAACGCAGAATGCGCGTCAGCATGGTGGTTATGCAGGGTATCTGCTTC
TGCTGGTGCATCTCCGGAGTGTCCGGGGTGCAGGACTCAAAGTCCACGGC
CACCCGCTGGCACACGAATGTGAGCAGGGTCAGGATGTCCAGCCGCTTGC
CATTGGCCGCCAGTTCGGCGCACAGGCTCTGCATGAACCAGCTGCCGCGG
GTGGTGTTGCGCCACGAATAGAATCCAGGAACCGTCGAGTAGGCGATCAG
AAAGTCGGCGTGCACTGGAATCTTGTAGCTCATCGAGGAGTCGCCATCGG
TTTCCGTCTGAGAACGCTGCATGGTCACTCCGCCATCCAATCTGTCGCCC
TGGCAGGCCTGTATGAAGAACAACTTGGGTTTGCCGGCTAGCGAGGGGCA
GTGATTGGCCGTGAAGAAGCTCCAGATGTTATCCAGCTTGTACTGTGTGT
CCTTGGCGTAGATGTAGCCCATCTCGCCGTGCGACAGGATGGCGACCAGG
ATGCAATCACTATCGCTGTGATTCTGCGACGCTGCATACTCGATTGTCCT
CAAAATGTCCTTGTAGCGGCAGTCCTTGTACACGGTCACTTCGAAGTCCA
GCTGCTTGAGCACCCGAGTCAGATTCTCGCAGTCCACATTGGTTCCCGCG
CGAGACTTCAAGGTGGGCACCTCGAAGTGCTCATGGTTGAAGATCAGTGC
CATTCCGCGGTTCTTGTGGCGCATGTTGTACTCGGCTGCATGGCGGTCGG
TGACCATTTTGGCTACATTCTTACGGTAGCTGGACGAGGGTGAGCTGTAC
CCGTTGGCCAGCTGCCCAATGGCTCCGCTGCCGTAAGGATGCGAGGATCC
TGCGGACAGGCCGCTGCTACCCGCTCCTCCGGAT

BO08324.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7788-PA 1020 Ice-RA 102..1017 934..19 4530 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-RA 1927 CG7788-RA 342..1257 934..19 4550 99.8 Minus
Dcp-1-RA 1749 CG5370-RA 854..1359 547..42 595 75.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:28:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29799999..29800914 934..19 4550 99.8 Minus
2R 25286936 2R 23552592..23552855 547..284 405 76.9 Minus
2R 25286936 2R 23553019..23553157 180..42 230 77.7 Minus
Blast to na_te.dros performed on 2015-02-03 12:28:08 has no hits.

BO08324.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:04 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
Ice-PA 102..1020 16..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:18 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7788-PA 102..1020 16..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:50:20 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 342..1257 19..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:36 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
Drice-RA 342..1257 19..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:36 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 29799999..29800914 19..934 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:50:20 Download gff for BO08324.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25625721..25626636 19..934 99   Minus

BO08324.5prime Sequence

857 bp (855 high quality bases) assembled on 2006-01-06

> BO08324.5prime
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGC

BO08324.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:21:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG7788-PA 1020 Ice-RA 1..841 17..857 4205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:45
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-RA 1927 CG7788-RA 240..1081 16..857 4210 100 Plus
Dcp-1-RA 1749 CG5370-RA 854..1171 505..822 435 76.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29799897..29800738 16..857 4210 100 Plus
2R 25286936 2R 23552592..23552855 505..768 405 76.9 Plus
Blast to na_te.dros performed on 2015-02-12 04:58:42 has no hits.

BO08324.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:05 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
Ice-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:19 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7788-PA 1..841 17..857 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:20 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 240..1081 16..857 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:27 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
Drice-RA 240..1081 16..857 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:27 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 29799897..29800738 16..857 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:20 Download gff for BO08324.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25625619..25626460 16..857 100   Plus

BO08324.complete Sequence

1051 bp (1051 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631152

> BO08324.complete
GAAGTTATCAGTCGACATGGACGCCACTAACAATGGAGAATCCGCCGACC
AGGTGGGCATCAGGGTGGGCAATCCGGAGCAGCCCAACGATCACACAGAT
GCCCTGGGCTCCGTGGGATCCGGAGGAGCGGGTAGCAGCGGCCTGGTCGC
AGGATCCTCGCATCCTTACGGCAGCGGAGCCATTGGGCAGCTGGCCAACG
GGTACAGCTCACCCTCGTCCAGCTACCGTAAGAATGTAGCCAAAATGGTC
ACCGACCGCCATGCAGCCGAGTACAACATGCGCCACAAGAACCGCGGAAT
GGCACTGATCTTCAACCATGAGCACTTCGAGGTGCCCACCTTGAAGTCTC
GCGCGGGAACCAATGTGGACTGCGAGAATCTGACTCGGGTGCTCAAGCAG
CTGGACTTCGAAGTGACCGTGTACAAGGACTGCCGCTACAAGGACATTTT
GAGGACAATCGAGTATGCAGCGTCGCAGAATCACAGCGATAGTGATTGCA
TCCTGGTCGCCATCCTGTCGCACGGCGAGATGGGCTACATCTACGCCAAG
GACACACAGTACAAGCTGGATAACATCTGGAGCTTCTTCACGGCCAATCA
CTGCCCCTCGCTAGCCGGCAAACCCAAGTTGTTCTTCATACAGGCCTGCC
AGGGCGACAGATTGGATGGCGGAGTGACCATGCAGCGTTCTCAGACGGAA
ACCGATGGCGACTCCTCGATGAGCTACAAGATTCCAGTGCACGCCGACTT
TCTGATCGCCTACTCGACGGTTCCTGGATTCTATTCGTGGCGCAACACCA
CCCGCGGCAGCTGGTTCATGCAGAGCCTGTGCGCCGAACTGGCGGCCAAT
GGCAAGCGGCTGGACATCCTGACCCTGCTCACATTCGTGTGCCAGCGGGT
GGCCGTGGACTTTGAGTCCTGCACCCCGGACACTCCGGAGATGCACCAGC
AGAAGCAGATACCCTGCATAACCACCATGCTGACGCGCATTCTGCGTTTC
AGCGACAAGCAGTTGGCACCAGCCGGACGGGTTGCAAGCTTTCTAGACCA
T

BO08324.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:07
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-RA 1020 CG7788-PA 1..1017 17..1033 5085 100 Plus
Dcp-1-RA 972 CG5370-PA 444..949 505..1010 595 74.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:08
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-RA 1927 CG7788-RA 240..1257 16..1033 5090 100 Plus
Dcp-1-RA 1749 CG5370-RA 854..1359 505..1010 595 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 29799897..29800914 16..1033 5090 100 Plus
2R 25286936 2R 23552592..23552855 505..768 405 76.9 Plus
2R 25286936 2R 23553019..23553157 872..1010 230 77.7 Plus
Blast to na_te.dros performed on 2014-11-27 16:33:06 has no hits.

BO08324.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:30 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 1..1020 17..1036 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:02 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 245..1262 16..1033 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:59 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 241..1257 17..1035 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:30 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
Ice-RA 245..1262 16..1033 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:04 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
Drice-RA 241..1257 17..1035 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:04 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
3R 29799898..29800914 17..1035 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:59 Download gff for BO08324.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 25625620..25626636 17..1035 99   Plus

BO08324.pep Sequence

Translation from 16 to 1051

> BO08324.pep
MDATNNGESADQVGIRVGNPEQPNDHTDALGSVGSGGAGSSGLVAGSSHP
YGSGAIGQLANGYSSPSSSYRKNVAKMVTDRHAAEYNMRHKNRGMALIFN
HEHFEVPTLKSRAGTNVDCENLTRVLKQLDFEVTVYKDCRYKDILRTIEY
AASQNHSDSDCILVAILSHGEMGYIYAKDTQYKLDNIWSFFTANHCPSLA
GKPKLFFIQACQGDRLDGGVTMQRSQTETDGDSSMSYKIPVHADFLIAYS
TVPGFYSWRNTTRGSWFMQSLCAELAANGKRLDILTLLTFVCQRVAVDFE
SCTPDTPEMHQQKQIPCITTMLTRILRFSDKQLAPAGRVASFLDH

BO08324.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:10
Subject Length Description Subject Range Query Range Score Percent Strand
Drice-PA 339 CG7788-PA 1..339 1..339 1795 100 Plus
Dcp-1-PA 323 CG5370-PA 57..316 72..331 980 67.7 Plus
Decay-PA 308 CG14902-PA 56..305 94..331 405 35.6 Plus
Strica-PB 527 CG7863-PB 317..525 98..330 232 32.5 Plus
Strica-PA 527 CG7863-PA 317..525 98..330 232 32.5 Plus