Clone Sequence Records
BO08327.3prime Sequence
862 bp (861 high quality bases) assembled on 2006-01-06
> BO08327.3prime
ATGGTCTAGAAAGCTTGCGAGGGGCGGCTTGTAGACTTCAATAGCAGGCG
TGAGCATATCCACTCGCGTTGATATCGAAGTATCACTGAGATTCTCGATG
CGCGGCCTTCGGCACTGCGGCCGATTGCGTCGGTGGCTGCGATCCTTCTT
GCAGCGGCAGTCGCAGTGCATGATGCACAGGGCAATGGACGAGATGACCG
TTATCACAAAGGGCACCGCGAAGAAGTGAATGATCATGGCCACCTGGTCG
TCGTGGTTGTACGATGTCAGCACCACCGTCTTGTTCTTTCGCGAATAGAA
GCACGGAAAGATGGCACCCTCGATGCCGTAGTAACCGTTAAAGTTCTTAC
ACGTCACCGATGGCGGATAGCCGCATCCCTTGATATTGACAAGCAGTGTC
GCCTCGCCGGACTGCTCCATATCGGACGTAAAGTTGCTATAATCGGTCAT
ATTCTCCGGTATCGTAATGTTCTGCTCAATGAACGTCACATAGATATGCA
CGCAGCGGTACAAATCGGAGGTGCAGCCCTCGCGACACGAACTCCACGAA
CAGTTGAATATACCCACTAGATCCTCGCGACGCGTCGTCGTGCACAGCGT
TGGCTTCTCGATAAAATCGTGGCTAAGCGTCGATATCGCCGGATCCACAT
AGAGCGGTACGAGGAAGAGCAGCGATGCCCCGGCGGTCACCGAGAAGAAG
GCCAGTGTCGAGGTTCCATAGAAACGCGCACGTTCCCGCCACGAACGAAA
GCGCCGATTGCCATTTTTCTTTTTCGGAGCCAGTTCTCGGATTTTACGTA
ACCGTAGCTCTTGTTGTTGCTGCTCGAGTAGTAATTCCGAACTGCCACTC
CTCATGTCGACT
BO08327.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12806-PA | 840 | CG12806-RA | 1..837 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:42:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1891 | 855..19 | 4185 | 100 | Minus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1891 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:42:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 86..855 | 3850 | 100 | Plus |
| 3R | 32079331 | 3R | 9828729..9828798 | 19..88 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:42:31 has no hits.
BO08327.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:10 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 16..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:27 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 16..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:56 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1049..1891 | 19..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:18:13 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1049..1891 | 19..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:18:13 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828729..9828795 | 19..85 | 100 | <- | Plus |
| 3R | 9864969..9865743 | 86..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:56 Download gff for
BO08327.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654451..5654517 | 19..85 | 100 | <- | Plus |
| arm_3R | 5690691..5691465 | 86..862 | 99 | | Plus |
BO08327.5prime Sequence
869 bp (761 high quality bases) assembled on 2006-01-06
> BO08327.5prime
GAAGTTATCAGTCGACATGAGGAGTGGCAGTTCGGAATTACTACTCGAGC
AGCAACAACAAGAGCTACGGTTACGTAAAATCCGAGAACTGGCTCCGAAA
AAGAAAAATGGCAATCGGCGCTTTCGTTCGTGGCGGGAACGTGCGCGTTT
CTATGGAACCTCGACACTGGCCTTCTTCTCGGTGACCGCCGGGGCATCGC
TGCTCTTCCTCGTACCGCTCTATGTGGATCCGGCGATATCGACGCTTAGC
CACGATTTTATCGAGAAGCCAACGCTGTGCACGACGACGCGTCGCGAGGA
TCTAGTGGGTATATTCAACTGTTCGTGGAGTTCGTGTCGCGAGGGCTGCA
CCTCCGATTTGTACCGCTGCGTGCATATCTATGTGACGTTCATTGAGCAG
AACATTACGATACCGGAGAATATGACCGATTATAGCAACTTTACGTCCGA
TATGGAGCAGTCCGGCGAGGCGACACTGCTTGTCAATATCAAGGGATGCG
GCTATCCGCCATCGGTGACGTGTAAGAACTTTAACGGTTACTACGGCATC
GAGGGTGCCATCTTTCCGTGCTTCTATTCGCGAAAGAACAAGACGGTGGT
GCTGACATCGTACAACCACGACGACCAGGTGGCCATGATCATTCACTTCT
TCGCGGTGCCCTTTGTGATAACGGTCATCTCGTCCATTGCCCTGTGCATC
ATGCACTGCGACTGCCGCTGCAAGAAGGATCGCAGCCACCGACGCAATCG
GCCGCAGTGCCGAAGGCCGCGCATCGAGAATCTCAGTGATACTTCGATAT
CAACGCGAGTGGATATGCTCACGCCTGCTATTGAAGTCTACNAGCCGCCC
CTCGCAAGCTTTCTAGACC
BO08327.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12806-PA | 840 | CG12806-RA | 1..837 | 17..853 | 4166 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1891 | 17..853 | 4174 | 99.9 | Plus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1891 | 17..853 | 4174 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 786..17 | 3850 | 100 | Minus |
| 3R | 32079331 | 3R | 9828729..9828798 | 853..784 | 339 | 98.6 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:35:04 has no hits.
BO08327.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:11 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:28 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12806-PA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:35 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1891 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:42 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1891 | 9..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:42 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828729..9828795 | 787..853 | 98 | <- | Minus |
| 3R | 9864969..9865745 | 9..786 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:35 Download gff for
BO08327.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654451..5654517 | 787..853 | 98 | <- | Minus |
| arm_3R | 5690691..5691467 | 9..786 | 99 | | Minus |
BO08327.complete Sequence
871 bp (871 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631153
> BO08327.complete
GAAGTTATCAGTCGACATGAGGAGTGGCAGTTCGGAATTACTACTCGAGC
AGCAACAACAAGAGCTACGGTTACGTAAAATCCGAGAACTGGCTCCGAAA
AAGAAAAATGGCAATCGGCGCTTTCGTTCGTGGCGGGAACGTGCGCGTTT
CTATGGAACCTCGACACTGGCCTTCTTCTCGGTGACCGCCGGGGCATCGC
TGCTCTTCCTCGTACCGCTCTATGTGGATCCGGCGATATCGACGCTTAGC
CACGATTTTATCGAGAAGCCAACGCTGTGCACGACGACGCGTCGCGAGGA
TCTAGTGGGTATATTCAACTGTTCGTGGAGTTCGTGTCGCGAGGGCTGCA
CCTCCGATTTGTACCGCTGCGTGCATATCTATGTGACGTTCATTGAGCAG
AACATTACGATACCGGAGAATATGACCGATTATAGCAACTTTACGTCCGA
TATGGAGCAGTCCGGCGAGGCGACACTGCTTGTCAATATCAAGGGATGCG
GCTATCCGCCATCGGTGACGTGTAAGAACTTTAACGGTTACTACGGCATC
GAGGGTGCCATCTTTCCGTGCTTCTATTCGCGAAAGAACAAGACGGTGGT
GCTGACATCGTACAACCACGACGACCAGGTGGCCATGATCATTCACTTCT
TCGCGGTGCCCTTTGTGATAACGGTCATCTCGTCCATTGCCCTGTGCATC
ATGCACTGCGACTGCCGCTGCAAGAAGGATCGCAGCCACCGACGCAATCG
GCCGCAGTGCCGAAGGCCGCGCATCGAGAATCTCAGTGATACTTCGATAT
CAACGCGAGTGGATATGCTCACGCCTGCTATTGAAGTCTACAAGCCGCCC
CTCGCAAGCTTTCTAGACCAT
BO08327.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:38:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 900 | CG12806-PB | 1..837 | 17..853 | 4185 | 100 | Plus |
| Teh1-RA | 840 | CG12806-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:38:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-RB | 4539 | CG12806-RB | 1055..1891 | 17..853 | 4185 | 100 | Plus |
| Teh1-RA | 4539 | CG12806-RA | 1055..1891 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:38:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9864969..9865738 | 786..17 | 3850 | 100 | Minus |
| 3R | 32079331 | 3R | 9828729..9828798 | 853..784 | 350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:38:47 has no hits.
BO08327.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:22 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1..840 | 17..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 17:02:13 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1891 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:24:57 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1891 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:22 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1048..1891 | 9..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:12 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Teh1-RA | 1055..1891 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:12 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9828725..9828795 | 787..855 | 97 | <- | Minus |
| 3R | 9864969..9865738 | 17..786 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:24:57 Download gff for
BO08327.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5654447..5654517 | 787..855 | 97 | <- | Minus |
| arm_3R | 5690691..5691460 | 17..786 | 100 | | Minus |
BO08327.pep Sequence
Translation from 16 to 871
> BO08327.pep
MRSGSSELLLEQQQQELRLRKIRELAPKKKNGNRRFRSWRERARFYGTST
LAFFSVTAGASLLFLVPLYVDPAISTLSHDFIEKPTLCTTTRREDLVGIF
NCSWSSCREGCTSDLYRCVHIYVTFIEQNITIPENMTDYSNFTSDMEQSG
EATLLVNIKGCGYPPSVTCKNFNGYYGIEGAIFPCFYSRKNKTVVLTSYN
HDDQVAMIIHFFAVPFVITVISSIALCIMHCDCRCKKDRSHRRNRPQCRR
PRIENLSDTSISTRVDMLTPAIEVYKPPLASFLDH
BO08327.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Teh1-PA | 279 | CG12806-PA | 1..279 | 1..279 | 1484 | 100 | Plus |
| Teh1-PB | 299 | CG12806-PB | 1..279 | 1..279 | 1484 | 100 | Plus |
| Teh2-PA | 309 | CG15004-PA | 82..277 | 41..237 | 321 | 37 | Plus |
| Teh2-PB | 313 | CG15004-PB | 82..277 | 41..237 | 321 | 37 | Plus |
| tipE-PB | 452 | CG1232-PB | 8..110 | 37..143 | 206 | 42.1 | Plus |
