Clone Sequence Records
BO08329.3prime Sequence
970 bp (750 high quality bases) assembled on 2006-01-06
> BO08329.3prime
ATGGTCTAGAAAGCTTGCGAGATGCTTCTTTTCCTTCATCGGCGAATCCT
TGACGTTTTCTGCCTGCTGGACCGCAGCGAACGTCGTGCGCGAAAAGGGA
TCCACACTCGCATCCCTGAAGGTCTTCTTTTGGGTCGGCAAACTCTTGGT
CGGCGCCGATGTAGCTGGTGTGGGTGTGGAGGACCCGGATTGGGCGCTAT
TCAAATGCGTCTGGCTCCTCTGACCACCCAATCCTCCGATCAGCGACTGG
TGAGGACTAAAGAAAGCGGCCGATGCTGTGCCATTGCGCAAACATTGTTC
AGATTCTCCGCCAAACATGTGAGCCGATGAATTGCCGGACAGCGGGGCAT
CCAGCCAGCAGCGCTTCACGGATATGGCCAATTGATCCTTGGCCTTGAAG
ATCTGCTCAATAATCCCATCGATGAGGGAGCCAAGTGTATCGTATTCATT
GGGCACCATTCCATCGACACTGCTCTCGAAGTAGCTAAACATGGGAAACC
AAACACGCGTCCTCTTGGAGTCGCTTTGCATGAGAGCCCTGTTATTTGCT
AGAGTATGATAGTACAGAAACAGACGTGAGGTGATATAGAAGGCCACAAA
CACATCGATGGAGTAGTGCTCGTGGGCAGCCAGGATGAAGAATATGCCAA
ACATGTTGAGCAGCCAGGTCAGCGTGTGCAGGAAGTACAGATTCCGCGGC
GTGTATTCTGTGATAAAGAAGTTGAGCAGGGTCAAGGCCACCGTGTGACC
ACTAAACATATAATCGCCGCAGGTCCGCACTCCCTGAATGGACATGCCCA
GGCCGCTCCAGATGCGATAGGCTCGTGACATGCGGATAATCAAGGCGCCC
ACCATGTCCACATTGGGATCATCGATGGGCAAGTCCTTCTGGCTGCACTG
CAGATGCGTTCCCGGTACGCTCAGCGACGTGATCAACATGGTGACGCAGC
GCAGCAGGAAAACCGTGGCC
BO08329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32380-PA | 1803 | SMSr-RA | 852..1800 | 967..19 | 4695 | 99.7 | Minus |
| CG32380-PB | 1155 | SMSr-RB | 204..1152 | 967..19 | 4695 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 1096..2044 | 967..19 | 4715 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7374597..7375116 | 19..538 | 2600 | 100 | Plus |
| 3L | 28110227 | 3L | 7375405..7375667 | 705..967 | 1285 | 99.2 | Plus |
| 3L | 28110227 | 3L | 7375179..7375346 | 537..704 | 840 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:22:29 has no hits.
BO08329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:12 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-PB | 201..1155 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:30 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32380-PB | 201..1155 | 16..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:41 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1093..2051 | 12..970 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:39:53 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1093..2051 | 12..970 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:39:53 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7374590..7375115 | 12..537 | 99 | <- | Plus |
| 3L | 7375180..7375346 | 538..704 | 100 | <- | Plus |
| 3L | 7375405..7375669 | 705..970 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:41 Download gff for
BO08329.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367690..7368215 | 12..537 | 99 | <- | Plus |
| arm_3L | 7368280..7368446 | 538..704 | 100 | <- | Plus |
| arm_3L | 7368505..7368769 | 705..970 | 98 | | Plus |
BO08329.5prime Sequence
1000 bp (768 high quality bases) assembled on 2006-01-06
> BO08329.5prime
GAAGTTATCAGTCGACATGTGCGACGGTGAAATTGGCGATCCGGTGACTC
AGCCACGTTCCGAGGGCGGTGGATTGGTCACAATGGATCAGGAGACCCGG
ACGCACTACCTCGACGCGGCGACAGATAAGCACCTGACCAATGGATCGCC
AGATCCAGAGCCCGTGGATCCGCTACTCGTGGCCCAGTGGTCCATCGAGA
ATGTGACCAGTTGGGCCACCTGCATGGAGCACTTTTCGAGAACACTGCTC
GACTGCCTGCGCCAGGAGGCCATCGACGGCGAGGTGCTGCTCTCCCTCAC
CGAGGAGGATGTACGTGATATGCGCTACAAACTGGGCTACAAACTCACCT
TCGGCGAGCTCAAGAAATTCTGGATAGCCGTGCTCAAGCTGCAGCTACTG
GTGAAGAACAGCTCTGCGGAATCCGTAATACTGGGCATCGAGTGCCATGG
GAACGGGAACTCGGTATACATGCCACTAGCCAGCACCGGCTGCGGTCCAC
CGTCCTCATCCACGTGCCCCTGTCCGCAGGCCGAATGCCCCAGCTATGTG
TCCGATTGCGATACCTATTTGCGCATGGGCGGACGCTATGTTCCGCCGGA
ATACTTCAAGACCGCCATGAGCTTAGGCTACTCGTTCGTTGTCACCTGGA
TAACATCGTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAG
CGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCC
GTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTT
GGGTGGTCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGCGA
TTCTTTGCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCACCATGTT
GATCACGTCGCTGAGCGTACCGGGGACGCATCTGCAGTGCAGCCAGAAGG
ACTTTGCCATCGATGATCCCCATGTGGACATGGTGGGGCGCCTTGAATAT
BO08329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32380-PA | 1803 | SMSr-RA | 1..971 | 17..987 | 4805 | 99.7 | Plus |
| CG32380-PB | 1155 | SMSr-RB | 1..323 | 665..987 | 1565 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:58:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..1227 | 17..1000 | 4850 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380620..7381230 | 627..17 | 3055 | 100 | Minus |
| 3L | 28110227 | 3L | 7375548..7375910 | 987..625 | 1785 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:58:15 has no hits.
BO08329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:13 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-PA | 1..983 | 17..1000 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:31 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32380-PA | 1..983 | 17..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:12:17 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1227 | 10..1000 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:38:23 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 239..1227 | 10..1000 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:38:23 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7375536..7375908 | 627..1000 | 98 | <- | Minus |
| 3L | 7380621..7381236 | 10..626 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:12:17 Download gff for
BO08329.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7368636..7369008 | 627..1000 | 98 | <- | Minus |
| arm_3L | 7373721..7374336 | 10..626 | 99 | | Minus |
BO08329.complete Sequence
1834 bp (1834 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631154
> BO08329.complete
GAAGTTATCAGTCGACATGTGCGACGGTGAAATTGGCGATCCGGTGACTC
AGCCACGTTCCGAGGGCGGTGGATTGGTCACAATGGATCAGGAGACCCGG
ACGCACTACCTCGACGCGGCGACAGATAAGCACCTGACCAATGGATCGCC
AGATCCAGAGCCCGTGGATCCGCTACTCGTGGCCCAGTGGTCCATCGAGA
ATGTGACCAGTTGGGCCACCTGCATGGAGCACTTTTCGAGAACACTGCTC
GACTGCCTGCGCCAGGAGGCCATCGACGGCGAGGTGCTGCTCTCCCTCAC
CGAGGAGGATGTACGTGATATGCGCTACAAACTGGGCTACAAACTCACCT
TCGGCGAGCTCAAGAAATTCTGGATAGCCGTGCTCAAGCTGCAGCTACTG
GTGAAGAACAGCTCTGCGGAATCCGTAATACTGGGCATCGAGTGCCATGG
GAACGGGAACTCGGTATACATGCCACTAGCCAGCACCGGCTGCGGTCCAC
CGTCCTCATCCACGTGCCCCTGTCCGCAGGCCGAATGCCCCAGCTATGTG
TCCGATTGCGATACCTATTTGCGCATGGGCGGACGCTATGTTCCGCCGGA
ATACTTCAAGACCGCCATGAGCTTAGGCTACTCGTTCGTTGTCACCTGGA
TAACATCGTTAACAATGGTTATTGTGCACGAGCGGGTTCCGGATATGAAG
CGCTATCCGCCGCTGCCGGACATCTTCCTGGACAACGTGCCGCATATTCC
GTGGGCCTTTAATATGTGCGAAATAACCGGCTCACTATTGTTCACCATTT
GGGTGGTCGTGCTAACCTTCCACAAGTATAGATTGGTCCTACTGAGGCGA
TTCTTTGCTCTGGCGGGCACGGTTTTCCTGCTGCGCTGCGTCACCATGTT
GATCACGTCGCTGAGCGTACCGGGAACGCATCTGCAGTGCAGCCAGAAGG
ACTTTGCCATCGATGATCCCAATGTGGACATGGTGGGCGCCTTGATTATC
CGCATGTCACGAGCCTATCGCATCTGGAGCGGCCTGGGCATGTCCATTCA
GGGAGTGCGGACCTGCGGCGATTATATGTTTAGTGGTCACACGGTGGCCT
TGACCCTGCTCAACTTCTTTATCACAGAATACACGCCGCGGAATCTGTAC
TTCCTGCACACGCTGACCTGGCTGCTCAACATGTTTGGCATATTCTTCAT
CCTGGCTGCCCACGAGCACTACTCCATCGATGTGTTTGTGGCCTTCTATA
TCACCTCACGTCTGTTTCTGTACTATCATACTCTAGCAAATAACAGGGCT
CTCATGCAAAGCGACTCCAAGAGGACGCGTGTTTGGTTTCCCATGTTTAG
CTACTTCGAGAGCAGTGTCGATGGAATGGTGCCCAATGAATACGATACAC
TTGGCTCCCTCATCGATGGGATTATTGAGCAGATCTTCAAGGCCAAGGAT
CAATTGGCCATATCCGTGAAGCGCTGCTGGCTGGATGCCCCGCTGTCCGG
CAATTCATCGGCTCACATGTTTGGCGGAGAATCTGAACAATGTTTGCGCA
ATGGCACAGCATCGGCCGCTTTCTTTAGTCCTCACCAGTCGCTGATCGGA
GGATTGGGTGGTCAGAGGAGCCAGACGCATTTGAATAGCGCCCAATCCGG
GTCCTCCACACCCACACCAGCTACATCGGCGCCGACCAAGAGTTTGCCGA
CCCAAAAGAAGACCTTCAGGGATGCGAGTGTGGATCCCTTTTCGCGCACG
ACGTTCGCTGCGGTCCAGCAGGCAGAAAACGTCAAGGATTCGCCGATGAA
GGAAAAGAAGCATCTCGCAAGCTTTCTAGACCAT
BO08329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 1803 | CG32380-PA | 1..1800 | 17..1816 | 9000 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:42:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-RA | 2591 | CG32380-RA | 245..2044 | 17..1816 | 9000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:42:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7380620..7381230 | 627..17 | 3055 | 100 | Minus |
| 3L | 28110227 | 3L | 7374597..7375116 | 1816..1297 | 2600 | 100 | Minus |
| 3L | 28110227 | 3L | 7375405..7375910 | 1130..625 | 2530 | 100 | Minus |
| 3L | 28110227 | 3L | 7375179..7375346 | 1298..1131 | 840 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 23:42:45 has no hits.
BO08329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:56 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 1..1803 | 17..1819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:23 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 282..2094 | 10..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:36:03 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 245..2044 | 17..1818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:56 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 282..2094 | 10..1823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:06:42 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SMSr-RA | 245..2044 | 17..1818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:06:42 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7374594..7375115 | 1298..1818 | 99 | <- | Minus |
| 3L | 7375180..7375346 | 1131..1297 | 100 | <- | Minus |
| 3L | 7375405..7375908 | 627..1130 | 100 | <- | Minus |
| 3L | 7380621..7381230 | 17..626 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:36:03 Download gff for
BO08329.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7367694..7368215 | 1298..1818 | 99 | <- | Minus |
| arm_3L | 7368280..7368446 | 1131..1297 | 100 | <- | Minus |
| arm_3L | 7368505..7369008 | 627..1130 | 100 | <- | Minus |
| arm_3L | 7373721..7374330 | 17..626 | 100 | | Minus |
BO08329.pep Sequence
Translation from 16 to 1834
> BO08329.pep
MCDGEIGDPVTQPRSEGGGLVTMDQETRTHYLDAATDKHLTNGSPDPEPV
DPLLVAQWSIENVTSWATCMEHFSRTLLDCLRQEAIDGEVLLSLTEEDVR
DMRYKLGYKLTFGELKKFWIAVLKLQLLVKNSSAESVILGIECHGNGNSV
YMPLASTGCGPPSSSTCPCPQAECPSYVSDCDTYLRMGGRYVPPEYFKTA
MSLGYSFVVTWITSLTMVIVHERVPDMKRYPPLPDIFLDNVPHIPWAFNM
CEITGSLLFTIWVVVLTFHKYRLVLLRRFFALAGTVFLLRCVTMLITSLS
VPGTHLQCSQKDFAIDDPNVDMVGALIIRMSRAYRIWSGLGMSIQGVRTC
GDYMFSGHTVALTLLNFFITEYTPRNLYFLHTLTWLLNMFGIFFILAAHE
HYSIDVFVAFYITSRLFLYYHTLANNRALMQSDSKRTRVWFPMFSYFESS
VDGMVPNEYDTLGSLIDGIIEQIFKAKDQLAISVKRCWLDAPLSGNSSAH
MFGGESEQCLRNGTASAAFFSPHQSLIGGLGGQRSQTHLNSAQSGSSTPT
PATSAPTKSLPTQKKTFRDASVDPFSRTTFAAVQQAENVKDSPMKEKKHL
ASFLDH
BO08329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SMSr-PA | 600 | CG32380-PA | 1..600 | 1..600 | 3180 | 100 | Plus |
