Clone Sequence Records
BO08335.3prime Sequence
920 bp (826 high quality bases) assembled on 2006-01-06
> BO08335.3prime
ATGGTCTAGAAAGCTTGCGCGCCAGCGCTCGTGCACTGCCGACTCGCGCA
TGATAATCTTCTGAAGTTTTTCCTGCTGGGTCATCTGATCCTGCTGGTTG
GTGGCACTGTTTCCCTGGTGGTGAACCGGCTGCTGCGCCCGCTGAAAGTT
GGGCAACGGCGCCTTCTTCTCGTGCGCCAGTTCCGTGAAGGCCAGCTTGC
GGCGCTGCTGCGGCGGTATCTTCTTGCAGTAGCTCAGCAGATGGATGTGC
AGCGTGCGTTCCAGGTCGAAGGAGCGATCGCAGTACTTGCACAAATGGAC
GGTGGTCAGGGTGGTTCTGCTCTCCCGCGGTCGCCGTGCACGGAAGCGCA
CCTTGAAGTCATCGTCGTGGGTGTGCCGGTGGGCGCCCAGCAGCGATCGG
ATGTGAAACTTGGCACCGCACACGCCGCACGAGTAGCTGGGCAGCTGCTG
GTCCGTGGCATAGCTGCCCAGCGGCTTCAGCTGCAGTCGGCCAAACGGTC
CGCCCTGATACTCCCCGCCATCTCCTTCATCATGATCGGGCTTCGTCGTT
CCGTTGGAGGCTTGCTGTGCGGCCATAATGGCTTCCATTTCCGCTGCCTC
GGCCTCGGCCTCGTAGTTCCGGGGCGTGAGGCCATTGCGACGAGGAGATA
GCAATAGATTGCAACTGCTGCGTCTTCTGTTATCGTAGTTGTTCGTCTTC
TCCAGCGGCGAACTCTCCTCCTCGTCGGTCTCTTCCTGAGCTGGAGCGTG
TAGCAGACTCCTCTTGCTGCGCCTGCGACGCTCACCATGGGCATGGCCAG
CCATGCTCGATCCTTCCCGCCCTGCTCCTCCGCCTGCGCCAGCCGTGCTT
CGCTTGGCCGCCCGAGTGGATGCACTGGCTCTGTTCGACTCGGACAGGTA
GATCAGCTTGCGCTCCACCG
BO08335.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PA | 1014 | CG6470-RA | 110..1011 | 920..19 | 4510 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 268..1169 | 920..19 | 4510 | 100 | Minus |
CG6470-RA | 1475 | CG6470-RA | 211..1112 | 920..19 | 4510 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513192..18513829 | 19..656 | 3190 | 100 | Plus |
X | 23542271 | X | 18514337..18514600 | 657..920 | 1320 | 100 | Plus |
Blast to na_te.dros performed 2015-02-10 19:02:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 369..315 | 109 | 73.2 | Minus |
BO08335.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:22 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 110..1014 | 18..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:44 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 110..1014 | 18..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:20 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 211..1112 | 19..920 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:09 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 211..1112 | 19..920 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:09 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18513192..18513829 | 19..656 | 100 | <- | Plus |
X | 18514337..18514600 | 657..920 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:20 Download gff for
BO08335.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407225..18407862 | 19..656 | 100 | <- | Plus |
arm_X | 18408370..18408633 | 657..920 | 100 | | Plus |
BO08335.5prime Sequence
890 bp (782 high quality bases) assembled on 2006-01-06
> BO08335.5prime
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGAAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAAAAGGCGCCGT
BO08335.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PA | 1014 | CG6470-RA | 1..874 | 17..890 | 4320 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 155..1032 | 13..890 | 4345 | 99.7 | Plus |
CG6470-RA | 1475 | CG6470-RA | 98..975 | 13..890 | 4345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513329..18513829 | 890..390 | 2475 | 99.6 | Minus |
X | 23542271 | X | 18514337..18514713 | 389..13 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-11 10:17:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 677..731 | 109 | 73.2 | Plus |
BO08335.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:23 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:45 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-PA | 1..874 | 17..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:47 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..975 | 9..890 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:18 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..975 | 9..890 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:18 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18514337..18514715 | 9..389 | 99 | | Minus |
X | 18513329..18513829 | 390..890 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:47 Download gff for
BO08335.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407362..18407862 | 390..890 | 99 | <- | Minus |
arm_X | 18408370..18408748 | 9..389 | 99 | | Minus |
BO08335.complete Sequence
1045 bp (1045 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631155
> BO08335.complete
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAGAAGGCGCCGTTGCCCAACTT
TCAGCGGGCGCAGCAGCCGGTTCACCACCAGGGAAACAGTGCCACCAACC
AGCAGGATCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCGC
GAGTCGGCAGTGCACGAGCGCTGGCGCGCAAGCTTTCTAGACCAT
BO08335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1014 | CG6470-PB | 1..1011 | 17..1027 | 5055 | 100 | Plus |
CG6470-RA | 1014 | CG6470-PA | 1..1011 | 17..1027 | 5055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-RB | 1532 | CG6470-RB | 155..1169 | 13..1027 | 5060 | 99.9 | Plus |
CG6470-RA | 1475 | CG6470-RA | 98..1112 | 13..1027 | 5060 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18513192..18513829 | 1027..390 | 3190 | 100 | Minus |
X | 23542271 | X | 18514337..18514713 | 389..13 | 1870 | 99.7 | Minus |
Blast to na_te.dros performed 2014-11-27 13:57:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 4863..4916 | 677..731 | 109 | 73.2 | Plus |
BO08335.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:31 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 1..1014 | 17..1028 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:04 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..1112 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:56 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 102..1112 | 17..1029 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:31 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 94..1112 | 9..1027 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:16 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6470-RA | 102..1112 | 17..1029 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:16 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18513190..18513829 | 390..1029 | 99 | <- | Minus |
X | 18514337..18514709 | 17..389 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:56 Download gff for
BO08335.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18407223..18407862 | 390..1029 | 99 | <- | Minus |
arm_X | 18408370..18408742 | 17..389 | 100 | | Minus |
BO08335.pep Sequence
Translation from 16 to 1045
> BO08335.pep
MNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAVERKLIYLSESNR
ASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRSKRSLLHAPAQEE
TDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRNYEAEAEAAEMEA
IMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLGSYATDQQLPSYS
CGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESRTTLTTVHLCKYC
DRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEKKAPLPNFQRAQQ
PVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWRASFLDH
BO08335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6470-PB | 337 | CG6470-PB | 1..337 | 1..337 | 1768 | 100 | Plus |
CG6470-PA | 337 | CG6470-PA | 1..337 | 1..337 | 1768 | 100 | Plus |
CG8478-PE | 571 | CG8478-PE | 204..467 | 10..293 | 228 | 25.9 | Plus |
CG8478-PB | 571 | CG8478-PB | 204..467 | 10..293 | 228 | 25.9 | Plus |
CG8478-PC | 572 | CG8478-PC | 205..468 | 10..293 | 228 | 25.9 | Plus |