Clone BO08335 Report

Search the DGRC for BO08335

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:35
Vector:pDNR-Dual
Associated Gene/TranscriptCG6470-RA
Protein status:BO08335.pep: validated full length
Sequenced Size:1045

Clone Sequence Records

BO08335.3prime Sequence

920 bp (826 high quality bases) assembled on 2006-01-06

> BO08335.3prime
ATGGTCTAGAAAGCTTGCGCGCCAGCGCTCGTGCACTGCCGACTCGCGCA
TGATAATCTTCTGAAGTTTTTCCTGCTGGGTCATCTGATCCTGCTGGTTG
GTGGCACTGTTTCCCTGGTGGTGAACCGGCTGCTGCGCCCGCTGAAAGTT
GGGCAACGGCGCCTTCTTCTCGTGCGCCAGTTCCGTGAAGGCCAGCTTGC
GGCGCTGCTGCGGCGGTATCTTCTTGCAGTAGCTCAGCAGATGGATGTGC
AGCGTGCGTTCCAGGTCGAAGGAGCGATCGCAGTACTTGCACAAATGGAC
GGTGGTCAGGGTGGTTCTGCTCTCCCGCGGTCGCCGTGCACGGAAGCGCA
CCTTGAAGTCATCGTCGTGGGTGTGCCGGTGGGCGCCCAGCAGCGATCGG
ATGTGAAACTTGGCACCGCACACGCCGCACGAGTAGCTGGGCAGCTGCTG
GTCCGTGGCATAGCTGCCCAGCGGCTTCAGCTGCAGTCGGCCAAACGGTC
CGCCCTGATACTCCCCGCCATCTCCTTCATCATGATCGGGCTTCGTCGTT
CCGTTGGAGGCTTGCTGTGCGGCCATAATGGCTTCCATTTCCGCTGCCTC
GGCCTCGGCCTCGTAGTTCCGGGGCGTGAGGCCATTGCGACGAGGAGATA
GCAATAGATTGCAACTGCTGCGTCTTCTGTTATCGTAGTTGTTCGTCTTC
TCCAGCGGCGAACTCTCCTCCTCGTCGGTCTCTTCCTGAGCTGGAGCGTG
TAGCAGACTCCTCTTGCTGCGCCTGCGACGCTCACCATGGGCATGGCCAG
CCATGCTCGATCCTTCCCGCCCTGCTCCTCCGCCTGCGCCAGCCGTGCTT
CGCTTGGCCGCCCGAGTGGATGCACTGGCTCTGTTCGACTCGGACAGGTA
GATCAGCTTGCGCTCCACCG

BO08335.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PA 1014 CG6470-RA 110..1011 920..19 4510 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:02:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 268..1169 920..19 4510 100 Minus
CG6470-RA 1475 CG6470-RA 211..1112 920..19 4510 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513192..18513829 19..656 3190 100 Plus
X 23542271 X 18514337..18514600 657..920 1320 100 Plus
Blast to na_te.dros performed 2015-02-10 19:02:12
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 369..315 109 73.2 Minus

BO08335.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:22 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 110..1014 18..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:44 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 110..1014 18..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:10:20 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 211..1112 19..920 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:23:09 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 211..1112 19..920 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:23:09 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18513192..18513829 19..656 100 <- Plus
X 18514337..18514600 657..920 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:10:20 Download gff for BO08335.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407225..18407862 19..656 100 <- Plus
arm_X 18408370..18408633 657..920 100   Plus

BO08335.5prime Sequence

890 bp (782 high quality bases) assembled on 2006-01-06

> BO08335.5prime
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGAAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAAAAGGCGCCGT

BO08335.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PA 1014 CG6470-RA 1..874 17..890 4320 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:17:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 155..1032 13..890 4345 99.7 Plus
CG6470-RA 1475 CG6470-RA 98..975 13..890 4345 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:17:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513329..18513829 890..390 2475 99.6 Minus
X 23542271 X 18514337..18514713 389..13 1870 99.7 Minus
Blast to na_te.dros performed 2015-02-11 10:17:16
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 677..731 109 73.2 Plus

BO08335.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:23 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:45 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-PA 1..874 17..890 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:20:47 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..975 9..890 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:23:18 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..975 9..890 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:23:18 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18514337..18514715 9..389 99   Minus
X 18513329..18513829 390..890 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:20:47 Download gff for BO08335.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407362..18407862 390..890 99 <- Minus
arm_X 18408370..18408748 9..389 99   Minus

BO08335.complete Sequence

1045 bp (1045 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631155

> BO08335.complete
GAAGTTATCAGTCGACATGAACAAGCCGCAAAAGCCCATCAAGGTGAAGC
GCGCCAAGCGGACCGGATGCTCCAGGATTCAGCCGCAGGAATTCGTGGAG
GCTCAGGTGGAGAACGCGCGCAGGGCGGTGGAGCGCAAGCTGATCTACCT
GTCCGAGTCGAACAGAGCCAGTGCATCCACTCGGGCGGCCAAGCGAAGCA
CGGCTGGCGCAGGCGGAGGAGCAGGGCGGGAAGGATCGAGCATGGCTGGC
CATGCCCATGGTGAGCGTCGCAGGCGCAGCAAGAGGAGTCTGCTACACGC
TCCAGCTCAGGAAGAGACCGACGAGGAGGAGAGTTCGCCGCTGGAGAAGA
CGAACAACTACGATAACAGAAGACGCAGCAGTTGCAATCTATTGCTATCT
CCTCGTCGCAATGGCCTCACGCCCCGGAACTACGAGGCCGAGGCCGAGGC
AGCGGAAATGGAAGCCATTATGGCCGCACAGCAAGCCTCCAACGGAACGA
CGAAGCCCGATCATGATGAAGGAGATGGCGGGGAGTATCAGGGCGGACCG
TTTGGCCGACTGCAGCTGAAGCCGCTGGGCAGCTATGCCACGGACCAGCA
GCTGCCCAGCTACTCGTGCGGCGTGTGCGGTGCCAAGTTTCACATCCGAT
CGCTGCTGGGCGCCCACCGGCACACCCACGACGATGACTTCAAGGTGCGC
TTCCGTGCACGGCGACCGCGGGAGAGCAGAACCACCCTGACCACCGTCCA
TTTGTGCAAGTACTGCGATCGCTCCTTCGACCTGGAACGCACGCTGCACA
TCCATCTGCTGAGCTACTGCAAGAAGATACCGCCGCAGCAGCGCCGCAAG
CTGGCCTTCACGGAACTGGCGCACGAGAAGAAGGCGCCGTTGCCCAACTT
TCAGCGGGCGCAGCAGCCGGTTCACCACCAGGGAAACAGTGCCACCAACC
AGCAGGATCAGATGACCCAGCAGGAAAAACTTCAGAAGATTATCATGCGC
GAGTCGGCAGTGCACGAGCGCTGGCGCGCAAGCTTTCTAGACCAT

BO08335.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:57:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1014 CG6470-PB 1..1011 17..1027 5055 100 Plus
CG6470-RA 1014 CG6470-PA 1..1011 17..1027 5055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:57:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-RB 1532 CG6470-RB 155..1169 13..1027 5060 99.9 Plus
CG6470-RA 1475 CG6470-RA 98..1112 13..1027 5060 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:57:53
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18513192..18513829 1027..390 3190 100 Minus
X 23542271 X 18514337..18514713 389..13 1870 99.7 Minus
Blast to na_te.dros performed 2014-11-27 13:57:54
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 4863..4916 677..731 109 73.2 Plus

BO08335.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:31 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 1..1014 17..1028 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:04 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..1112 9..1027 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:29:56 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 102..1112 17..1029 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:31 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 94..1112 9..1027 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:00:16 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
CG6470-RA 102..1112 17..1029 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:00:16 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
X 18513190..18513829 390..1029 99 <- Minus
X 18514337..18514709 17..389 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:29:56 Download gff for BO08335.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18407223..18407862 390..1029 99 <- Minus
arm_X 18408370..18408742 17..389 100   Minus

BO08335.pep Sequence

Translation from 16 to 1045

> BO08335.pep
MNKPQKPIKVKRAKRTGCSRIQPQEFVEAQVENARRAVERKLIYLSESNR
ASASTRAAKRSTAGAGGGAGREGSSMAGHAHGERRRRSKRSLLHAPAQEE
TDEEESSPLEKTNNYDNRRRSSCNLLLSPRRNGLTPRNYEAEAEAAEMEA
IMAAQQASNGTTKPDHDEGDGGEYQGGPFGRLQLKPLGSYATDQQLPSYS
CGVCGAKFHIRSLLGAHRHTHDDDFKVRFRARRPRESRTTLTTVHLCKYC
DRSFDLERTLHIHLLSYCKKIPPQQRRKLAFTELAHEKKAPLPNFQRAQQ
PVHHQGNSATNQQDQMTQQEKLQKIIMRESAVHERWRASFLDH

BO08335.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG6470-PB 337 CG6470-PB 1..337 1..337 1768 100 Plus
CG6470-PA 337 CG6470-PA 1..337 1..337 1768 100 Plus
CG8478-PE 571 CG8478-PE 204..467 10..293 228 25.9 Plus
CG8478-PB 571 CG8478-PB 204..467 10..293 228 25.9 Plus
CG8478-PC 572 CG8478-PC 205..468 10..293 228 25.9 Plus