Clone Sequence Records
BO08340.3prime Sequence
916 bp (825 high quality bases) assembled on 2006-01-06
> BO08340.3prime
ATGGTCTAGAAAGCTTGCTTCGGAATTGGCCTGCGTTTGCGTTTCCGTCA
CTTCCTCCTCCTCGATCTTGGCAGGAGGTTGTACTTCTGCGGGCACCACT
TCGATCTGGCCAGCGACTTCTTCAACTTTTGGCTCCTCCACAAGTTCAGA
TTTGTTGGACATCGCGCTTAGCTTTCTGCCAACCGTGGAACCTTCCACTG
ACGACGACGTGCTGATTTTGCGCGCTGCTGCTGCAAAGCTGGCGACTCCC
TCGGCGGCCAAAATGCTGGCACTGGATAAAAGTATGGAAACTTGCTCCGC
CGACGGACAACTCGTGATGATCATATCATCTGTGGAGTAACCATTGGTGG
TCAGCAGTTGTTCCAGCTTTACAAACGATTGAATGATGTTGTTTCGGATC
GGTCTGAAGATGATGAATTCTGTATCACGATTGCTTAGGTAGAGCTGCAT
GGACCGCTGTAGCACCGCCAGCTTGGCTTTGATCAAGCGCTGCGTCTCCT
GGATTATACTGCTGATCTGCTGCGGACTGGCCCATGGACTTTGCCTTAGA
ACGTAGCTGGCTTTCGTCGACTCCGGCGATTGGGGCGTGGCTGGAGTGGA
CTGCGCCAACAGACTCTGCGCCTTTTCTAGGAATGTGATGAGAGGGCCCA
CTAGCATTTGAACTGCATCCTTGATGTACTTCTCGCACACCGACTTGAGC
TGACGGTCAACTTCCTTGCGAGAGTCGAGTAAATGCTCCTTGATCTGCGG
CGTGCCCTCCAGAAGGAATTCCAACAGCGCATTATTGCTACCCATCGAAA
AGAGCTGTTTGCGCTTCTGCAGCAATCCAAGGCTGCGGTCTTCACCTTGC
TAAAGTCCAGCGAAGTTTCCTTCACCGTAAAGTCACACGAAACGGTGCAA
TCTGTTCCCGCAGAAT
BO08340.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3248-PA | 2718 | CG3248-RA | 1904..2715 | 830..19 | 4060 | 100 | Minus |
CG3248-PA | 2718 | CG3248-RA | 1849..1904 | 884..829 | 280 | 100 | Minus |
CG3248-PA | 2718 | CG3248-RA | 1816..1848 | 916..884 | 165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cog3-RA | 2973 | CG3248-RA | 1845..2744 | 916..19 | 4450 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3454359..3454883 | 394..916 | 2525 | 99.6 | Plus |
2L | 23513712 | 2L | 3453926..3454300 | 19..393 | 1875 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:38:29 has no hits.
BO08340.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:29 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3248-PA | 1816..2718 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:55 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3248-PA | 1816..2718 | 15..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:41 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 1845..2750 | 10..916 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:45 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 1845..2750 | 10..916 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:45 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3453920..3454300 | 10..393 | 98 | <- | Plus |
2L | 3454359..3454883 | 394..916 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:41 Download gff for
BO08340.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3453920..3454300 | 10..393 | 98 | <- | Plus |
arm_2L | 3454359..3454883 | 394..916 | 99 | | Plus |
BO08340.5prime Sequence
954 bp (818 high quality bases) assembled on 2006-01-06
> BO08340.5prime
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GGCCGCGGCAAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGG
AACA
BO08340.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3248-PA | 2718 | CG3248-RA | 1..938 | 17..954 | 4690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:22:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cog3-RA | 2973 | CG3248-RA | 30..967 | 17..954 | 4690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:22:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3456302..3456815 | 694..181 | 2570 | 100 | Minus |
2L | 23513712 | 2L | 3455985..3456244 | 954..695 | 1300 | 100 | Minus |
2L | 23513712 | 2L | 3456870..3457035 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 22:22:34 has no hits.
BO08340.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:29 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3248-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:57 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3248-PA | 1..937 | 17..953 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:48 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 23..966 | 9..953 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:43:50 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 23..966 | 9..953 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:43:50 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3455986..3456244 | 695..953 | 100 | <- | Minus |
2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
2L | 3456871..3457042 | 9..181 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:48 Download gff for
BO08340.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3455986..3456244 | 695..953 | 100 | <- | Minus |
arm_2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
arm_2L | 3456871..3457042 | 9..181 | 97 | | Minus |
BO08340.complete Sequence
2749 bp (2749 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631156
> BO08340.complete
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GGCCGCGGCAAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGG
AACACAGCCTCGACTACGCCCAACTAATGGCGGATCTTCAACAGCACTAC
TTGGCGCAAAGAGCCAGCGTTATGTCGCCAGCAGTGAATCTGTCCATACA
AAACGTTAAGGTGGCCCACAAAGGGGATCACTGCTCTCTCACCCGAAGCG
CCTGCGCCTTTTTGGTGCATGTTTGCCAGGACGAACAGCGTTTGTTCTAC
CAGTTCTTCAGCACAGGAGCGCCACACCTGACGGTTTATCTGGAGGGTCT
GTGCACCATTCTCTATGACACCATGCGACCCTTTATTATACATATTAATC
ACTTGGAAACGCTGGCGGAGATCTGCTCCATTCTACGAATTGAAATGCTG
GAGGAGCATGTCCAGCAGAATCCTGTTGCACTGGAAGCCTTTGCCACCAT
TGCGCACCAATTGCTGCAGGATGTGCAGGAGCGTTTAGTCTTCCGAGCGC
ATCTATATCTGCAGTCGGACATTCAGAACTTTAATCCCTCATCGGGAGAT
TTGGCCTACCCCGAGAAGTTGGAAATGATGGAGAGCATTGCCCTGTCCCT
TCAAGAACCCGCCCCTTTGCGCCGCTCCGATTCTCGCAACTCCATGGTTT
CCAGTGTTTCAAGTGCTGTGGAGACGGAAAGCGTGGCCACTGCCTACACG
GTGAAGCAAATGAATTCCCCGGCCGATCTGCATGGCATGTGGTACCCCAC
AGTACGTCGGACACTGGTGTGCCTCTCAAGGCTTTACCGCTGCGTGGATC
GACCCATTTTCCAAGGCCTTTCTCAGGAAGCGCTCAAGCTGTGCATCCAG
AGTGTCTCTCATGCGGCTGGCAAGATATCAGCCAATAAGACGCCAATTGA
TGGCGAGCTCTTCGAAATCAAGCATCTCCTAATTCTGCGGGAACAGATTG
CACCGTTTCGTGTGGACTTTACGGTGAAGGAAACTTCGCTGGACTTTAGC
AAGGTGAAGACCGCAGCCTTTGGATTGCTGCAGAAGCGCAAACAGCTCTT
TTCGATGGGTAGCAATAATGCGCTGTTGGAATTCCTTCTGGAGGGCACGC
CGCAGATCAAGGAGCATTTACTCGACTCTCGCAAGGAAGTTGACCGTCAG
CTCAAGTCGGTGTGCGAGAAGTACATCAAGGATGCAGTTCAAATGCTAGT
GGGCCCTCTCATCACATTCCTAGAAAAGGCGCAGAGTCTGTTGGCGCAGT
CCACTCCAGCCACGCCCCAATCGCCGGAGTCGACGAAAGCCAGCTACGTT
CTAAGGCAAAGTCCATGGGCCAGTCCGCAGCAGATCAGCAGTATAATCCA
GGAGACGCAGCGCTTGATCAAAGCCAAGCTGGCGGTGCTACAGCGGTCCA
TGCAGCTCTACCTAAGCAATCGTGATACAGAATTCATCATCTTCAGACCG
ATCCGAAACAACATCATTCAATCGTTTGTAAAGCTGGAACAACTGCTGAC
CACCAATGGTTACTCCACAGATGATATGATCATCACGAGTTGTCCGTCGG
CGGAGCAAGTTTCCATACTTTTATCCAGTGCCAGCATTTTGGCCGCCGAG
GGAGTCGCCAGCTTTGCAGCAGCAGCGCGCAAAATCAGCACGTCGTCGTC
AGTGGAAGGTTCCACGGTTGGCAGAAAGCTAAGCGCGATGTCCAACAAAT
CTGAACTTGTGGAGGAGCCAAAAGTTGAAGAAGTCGCTGGCCAGATCGAA
GTGGTGCCCGCAGAAGTACAACCTCCTGCCAAGATCGAGGAGGAGGAAGT
GACGGAAACGCAAACGCAGGCCAATTCCGAAGCAAGCTTTCTAGACCAT
BO08340.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cog3-RA | 2718 | CG3248-PA | 1..2715 | 17..2731 | 13575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cog3-RA | 2973 | CG3248-RA | 30..2744 | 17..2731 | 13575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3454359..3455101 | 2356..1614 | 3715 | 100 | Minus |
2L | 23513712 | 2L | 3456302..3456815 | 694..181 | 2570 | 100 | Minus |
2L | 23513712 | 2L | 3455756..3456244 | 1183..695 | 2445 | 100 | Minus |
2L | 23513712 | 2L | 3453926..3454300 | 2731..2357 | 1875 | 100 | Minus |
2L | 23513712 | 2L | 3456870..3457035 | 182..17 | 830 | 100 | Minus |
2L | 23513712 | 2L | 3455344..3455504 | 1483..1323 | 805 | 100 | Minus |
2L | 23513712 | 2L | 3455564..3455703 | 1322..1183 | 700 | 100 | Minus |
2L | 23513712 | 2L | 3455156..3455287 | 1613..1482 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:11:37 has no hits.
BO08340.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:57 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 1..2718 | 17..2735 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:24 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 17..2744 | 9..2740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:47 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 30..2744 | 17..2733 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:57 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 17..2744 | 9..2740 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:05 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cog3-RA | 30..2744 | 17..2733 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:05 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3453924..3454300 | 2357..2733 | 99 | <- | Minus |
2L | 3454359..3455101 | 1614..2356 | 100 | <- | Minus |
2L | 3455156..3455285 | 1484..1613 | 100 | <- | Minus |
2L | 3455344..3455504 | 1323..1483 | 100 | <- | Minus |
2L | 3455564..3455703 | 1183..1322 | 100 | <- | Minus |
2L | 3455757..3456244 | 695..1182 | 100 | <- | Minus |
2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
2L | 3456871..3457035 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:47 Download gff for
BO08340.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3455344..3455504 | 1323..1483 | 100 | <- | Minus |
arm_2L | 3455564..3455703 | 1183..1322 | 100 | <- | Minus |
arm_2L | 3453924..3454300 | 2357..2733 | 99 | <- | Minus |
arm_2L | 3454359..3455101 | 1614..2356 | 100 | <- | Minus |
arm_2L | 3455156..3455285 | 1484..1613 | 100 | <- | Minus |
arm_2L | 3455757..3456244 | 695..1182 | 100 | <- | Minus |
arm_2L | 3456302..3456814 | 182..694 | 100 | <- | Minus |
arm_2L | 3456871..3457035 | 17..181 | 100 | | Minus |
BO08340.pep Sequence
Translation from 16 to 2749
> BO08340.pep
MDDVERIQSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWR
DSGPSAPAPTTPTQVGPTDSSAAATSQSGDDIRLPAEGLQNTNEFLLWFA
DVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDEYD
FVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSP
TLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLV
RNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKV
KRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVA
HKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGAPHLTVYLEGLCTILY
DTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL
QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAP
LRRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTL
VCLSRLYRCVDRPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFE
IKHLLILREQIAPFRVDFTVKETSLDFSKVKTAAFGLLQKRKQLFSMGSN
NALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLVGPLIT
FLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRL
IKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS
TDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAARKISTSSSVEGST
VGRKLSAMSNKSELVEEPKVEEVAGQIEVVPAEVQPPAKIEEEEVTETQT
QANSEASFLDH
BO08340.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cog3-PA | 905 | CG3248-PA | 1..905 | 1..905 | 4550 | 100 | Plus |