Clone BO08340 Report

Search the DGRC for BO08340

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCog3-RA
Protein status:BO08340.pep: validated full length
Sequenced Size:2749

Clone Sequence Records

BO08340.3prime Sequence

916 bp (825 high quality bases) assembled on 2006-01-06

> BO08340.3prime
ATGGTCTAGAAAGCTTGCTTCGGAATTGGCCTGCGTTTGCGTTTCCGTCA
CTTCCTCCTCCTCGATCTTGGCAGGAGGTTGTACTTCTGCGGGCACCACT
TCGATCTGGCCAGCGACTTCTTCAACTTTTGGCTCCTCCACAAGTTCAGA
TTTGTTGGACATCGCGCTTAGCTTTCTGCCAACCGTGGAACCTTCCACTG
ACGACGACGTGCTGATTTTGCGCGCTGCTGCTGCAAAGCTGGCGACTCCC
TCGGCGGCCAAAATGCTGGCACTGGATAAAAGTATGGAAACTTGCTCCGC
CGACGGACAACTCGTGATGATCATATCATCTGTGGAGTAACCATTGGTGG
TCAGCAGTTGTTCCAGCTTTACAAACGATTGAATGATGTTGTTTCGGATC
GGTCTGAAGATGATGAATTCTGTATCACGATTGCTTAGGTAGAGCTGCAT
GGACCGCTGTAGCACCGCCAGCTTGGCTTTGATCAAGCGCTGCGTCTCCT
GGATTATACTGCTGATCTGCTGCGGACTGGCCCATGGACTTTGCCTTAGA
ACGTAGCTGGCTTTCGTCGACTCCGGCGATTGGGGCGTGGCTGGAGTGGA
CTGCGCCAACAGACTCTGCGCCTTTTCTAGGAATGTGATGAGAGGGCCCA
CTAGCATTTGAACTGCATCCTTGATGTACTTCTCGCACACCGACTTGAGC
TGACGGTCAACTTCCTTGCGAGAGTCGAGTAAATGCTCCTTGATCTGCGG
CGTGCCCTCCAGAAGGAATTCCAACAGCGCATTATTGCTACCCATCGAAA
AGAGCTGTTTGCGCTTCTGCAGCAATCCAAGGCTGCGGTCTTCACCTTGC
TAAAGTCCAGCGAAGTTTCCTTCACCGTAAAGTCACACGAAACGGTGCAA
TCTGTTCCCGCAGAAT

BO08340.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG3248-PA 2718 CG3248-RA 1904..2715 830..19 4060 100 Minus
CG3248-PA 2718 CG3248-RA 1849..1904 884..829 280 100 Minus
CG3248-PA 2718 CG3248-RA 1816..1848 916..884 165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:38:31
Subject Length Description Subject Range Query Range Score Percent Strand
Cog3-RA 2973 CG3248-RA 1845..2744 916..19 4450 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3454359..3454883 394..916 2525 99.6 Plus
2L 23513712 2L 3453926..3454300 19..393 1875 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:38:29 has no hits.

BO08340.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:29 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3248-PA 1816..2718 15..916 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:55 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3248-PA 1816..2718 15..916 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:45:41 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 1845..2750 10..916 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:17:45 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 1845..2750 10..916 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:17:45 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 3453920..3454300 10..393 98 <- Plus
2L 3454359..3454883 394..916 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:45:41 Download gff for BO08340.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3453920..3454300 10..393 98 <- Plus
arm_2L 3454359..3454883 394..916 99   Plus

BO08340.5prime Sequence

954 bp (818 high quality bases) assembled on 2006-01-06

> BO08340.5prime
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GGCCGCGGCAAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGG
AACA

BO08340.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG3248-PA 2718 CG3248-RA 1..938 17..954 4690 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:22:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cog3-RA 2973 CG3248-RA 30..967 17..954 4690 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3456302..3456815 694..181 2570 100 Minus
2L 23513712 2L 3455985..3456244 954..695 1300 100 Minus
2L 23513712 2L 3456870..3457035 182..17 830 100 Minus
Blast to na_te.dros performed on 2015-02-09 22:22:34 has no hits.

BO08340.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:29 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3248-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:37:57 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3248-PA 1..937 17..953 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:24:48 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 23..966 9..953 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:43:50 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 23..966 9..953 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:43:50 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 3455986..3456244 695..953 100 <- Minus
2L 3456302..3456814 182..694 100 <- Minus
2L 3456871..3457042 9..181 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:24:48 Download gff for BO08340.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3455986..3456244 695..953 100 <- Minus
arm_2L 3456302..3456814 182..694 100 <- Minus
arm_2L 3456871..3457042 9..181 97   Minus

BO08340.complete Sequence

2749 bp (2749 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631156

> BO08340.complete
GAAGTTATCAGTCGACATGGATGACGTCGAACGAATTCAGAGCGAGAATG
AGAATTTGCGCAAGATTCGCAATCGCCTGATGCAATGGGAGTCCAAAACG
GACCCGCTGGCGGCTCTGAGTATCCAGCAAGAGGAGCACCTGGACGTCCT
GACCAATCTGTGGCGCGACAGCGGACCATCGGCACCGGCACCGACTACGC
CCACCCAGGTGGGTCCTACCGATTCATCGGCAGCTGCAACTTCGCAAAGC
GGCGATGACATCAGACTACCTGCGGAGGGACTCCAGAACACCAATGAGTT
TCTGCTTTGGTTCGCGGACGTCAGCGCCGAGATCGAGCAACGTGGCGATG
CCGACTACCACAAATACCTGCAGCAGCTGGAGCAGCGCAAAGCGGAGTGC
TCCCACATGCTGGACCAGATCGCTGGGGCCATGGAGCGCCTGGGTGCCCT
CTGCGACGAGTACGACTTTGTGTCGCAAAAGACCAGCGCTCTGAACACGG
CCAGCGAGCAGTTGATCGAGGAGCAGGAGCGACTGCAGGAGCTGAGTCAC
GAGATTCAACGCCGTCTGCACTACTTCAGCCAGGTGGAGTTGCTCAACCA
ACGACTTCAGAGCCCCACGCTTTCGGTGGCTAGCGAAGCGTTCCGGGAGT
GCCTCAACAAGATCGACGAATGCCTAAACTACATCGAGGAGAATCCCAAA
TTCAAGGATGCGGCCGCCTACAATGTGAAGTACAGGCAGTGCCTGGCCAA
AGCCTCGGGTCTGGTGCGTAACTATGTGACGAGTGTGATAAACCAGGCAA
CCGAGGCCACGCTCCATCCCAAGAACAATATGCCGGATGCCTCCGCTGCT
CTCAAGGCACCAGATGCCGCATTCGCTCTGTACTACGGCAAATATCAAAC
GGCCGCGGCAAAAGTGAAGCGGGTCGCCCAGTTGATTGAGTCCCGGTCGG
AACACAGCCTCGACTACGCCCAACTAATGGCGGATCTTCAACAGCACTAC
TTGGCGCAAAGAGCCAGCGTTATGTCGCCAGCAGTGAATCTGTCCATACA
AAACGTTAAGGTGGCCCACAAAGGGGATCACTGCTCTCTCACCCGAAGCG
CCTGCGCCTTTTTGGTGCATGTTTGCCAGGACGAACAGCGTTTGTTCTAC
CAGTTCTTCAGCACAGGAGCGCCACACCTGACGGTTTATCTGGAGGGTCT
GTGCACCATTCTCTATGACACCATGCGACCCTTTATTATACATATTAATC
ACTTGGAAACGCTGGCGGAGATCTGCTCCATTCTACGAATTGAAATGCTG
GAGGAGCATGTCCAGCAGAATCCTGTTGCACTGGAAGCCTTTGCCACCAT
TGCGCACCAATTGCTGCAGGATGTGCAGGAGCGTTTAGTCTTCCGAGCGC
ATCTATATCTGCAGTCGGACATTCAGAACTTTAATCCCTCATCGGGAGAT
TTGGCCTACCCCGAGAAGTTGGAAATGATGGAGAGCATTGCCCTGTCCCT
TCAAGAACCCGCCCCTTTGCGCCGCTCCGATTCTCGCAACTCCATGGTTT
CCAGTGTTTCAAGTGCTGTGGAGACGGAAAGCGTGGCCACTGCCTACACG
GTGAAGCAAATGAATTCCCCGGCCGATCTGCATGGCATGTGGTACCCCAC
AGTACGTCGGACACTGGTGTGCCTCTCAAGGCTTTACCGCTGCGTGGATC
GACCCATTTTCCAAGGCCTTTCTCAGGAAGCGCTCAAGCTGTGCATCCAG
AGTGTCTCTCATGCGGCTGGCAAGATATCAGCCAATAAGACGCCAATTGA
TGGCGAGCTCTTCGAAATCAAGCATCTCCTAATTCTGCGGGAACAGATTG
CACCGTTTCGTGTGGACTTTACGGTGAAGGAAACTTCGCTGGACTTTAGC
AAGGTGAAGACCGCAGCCTTTGGATTGCTGCAGAAGCGCAAACAGCTCTT
TTCGATGGGTAGCAATAATGCGCTGTTGGAATTCCTTCTGGAGGGCACGC
CGCAGATCAAGGAGCATTTACTCGACTCTCGCAAGGAAGTTGACCGTCAG
CTCAAGTCGGTGTGCGAGAAGTACATCAAGGATGCAGTTCAAATGCTAGT
GGGCCCTCTCATCACATTCCTAGAAAAGGCGCAGAGTCTGTTGGCGCAGT
CCACTCCAGCCACGCCCCAATCGCCGGAGTCGACGAAAGCCAGCTACGTT
CTAAGGCAAAGTCCATGGGCCAGTCCGCAGCAGATCAGCAGTATAATCCA
GGAGACGCAGCGCTTGATCAAAGCCAAGCTGGCGGTGCTACAGCGGTCCA
TGCAGCTCTACCTAAGCAATCGTGATACAGAATTCATCATCTTCAGACCG
ATCCGAAACAACATCATTCAATCGTTTGTAAAGCTGGAACAACTGCTGAC
CACCAATGGTTACTCCACAGATGATATGATCATCACGAGTTGTCCGTCGG
CGGAGCAAGTTTCCATACTTTTATCCAGTGCCAGCATTTTGGCCGCCGAG
GGAGTCGCCAGCTTTGCAGCAGCAGCGCGCAAAATCAGCACGTCGTCGTC
AGTGGAAGGTTCCACGGTTGGCAGAAAGCTAAGCGCGATGTCCAACAAAT
CTGAACTTGTGGAGGAGCCAAAAGTTGAAGAAGTCGCTGGCCAGATCGAA
GTGGTGCCCGCAGAAGTACAACCTCCTGCCAAGATCGAGGAGGAGGAAGT
GACGGAAACGCAAACGCAGGCCAATTCCGAAGCAAGCTTTCTAGACCAT

BO08340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:11:37
Subject Length Description Subject Range Query Range Score Percent Strand
Cog3-RA 2718 CG3248-PA 1..2715 17..2731 13575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:11:38
Subject Length Description Subject Range Query Range Score Percent Strand
Cog3-RA 2973 CG3248-RA 30..2744 17..2731 13575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:11:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 3454359..3455101 2356..1614 3715 100 Minus
2L 23513712 2L 3456302..3456815 694..181 2570 100 Minus
2L 23513712 2L 3455756..3456244 1183..695 2445 100 Minus
2L 23513712 2L 3453926..3454300 2731..2357 1875 100 Minus
2L 23513712 2L 3456870..3457035 182..17 830 100 Minus
2L 23513712 2L 3455344..3455504 1483..1323 805 100 Minus
2L 23513712 2L 3455564..3455703 1322..1183 700 100 Minus
2L 23513712 2L 3455156..3455287 1613..1482 660 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:11:37 has no hits.

BO08340.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:57 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 1..2718 17..2735 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:24 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 17..2744 9..2740 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:47 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 30..2744 17..2733 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:57 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 17..2744 9..2740 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:47:05 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
Cog3-RA 30..2744 17..2733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:47:05 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
2L 3453924..3454300 2357..2733 99 <- Minus
2L 3454359..3455101 1614..2356 100 <- Minus
2L 3455156..3455285 1484..1613 100 <- Minus
2L 3455344..3455504 1323..1483 100 <- Minus
2L 3455564..3455703 1183..1322 100 <- Minus
2L 3455757..3456244 695..1182 100 <- Minus
2L 3456302..3456814 182..694 100 <- Minus
2L 3456871..3457035 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:47 Download gff for BO08340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 3455344..3455504 1323..1483 100 <- Minus
arm_2L 3455564..3455703 1183..1322 100 <- Minus
arm_2L 3453924..3454300 2357..2733 99 <- Minus
arm_2L 3454359..3455101 1614..2356 100 <- Minus
arm_2L 3455156..3455285 1484..1613 100 <- Minus
arm_2L 3455757..3456244 695..1182 100 <- Minus
arm_2L 3456302..3456814 182..694 100 <- Minus
arm_2L 3456871..3457035 17..181 100   Minus

BO08340.pep Sequence

Translation from 16 to 2749

> BO08340.pep
MDDVERIQSENENLRKIRNRLMQWESKTDPLAALSIQQEEHLDVLTNLWR
DSGPSAPAPTTPTQVGPTDSSAAATSQSGDDIRLPAEGLQNTNEFLLWFA
DVSAEIEQRGDADYHKYLQQLEQRKAECSHMLDQIAGAMERLGALCDEYD
FVSQKTSALNTASEQLIEEQERLQELSHEIQRRLHYFSQVELLNQRLQSP
TLSVASEAFRECLNKIDECLNYIEENPKFKDAAAYNVKYRQCLAKASGLV
RNYVTSVINQATEATLHPKNNMPDASAALKAPDAAFALYYGKYQTAAAKV
KRVAQLIESRSEHSLDYAQLMADLQQHYLAQRASVMSPAVNLSIQNVKVA
HKGDHCSLTRSACAFLVHVCQDEQRLFYQFFSTGAPHLTVYLEGLCTILY
DTMRPFIIHINHLETLAEICSILRIEMLEEHVQQNPVALEAFATIAHQLL
QDVQERLVFRAHLYLQSDIQNFNPSSGDLAYPEKLEMMESIALSLQEPAP
LRRSDSRNSMVSSVSSAVETESVATAYTVKQMNSPADLHGMWYPTVRRTL
VCLSRLYRCVDRPIFQGLSQEALKLCIQSVSHAAGKISANKTPIDGELFE
IKHLLILREQIAPFRVDFTVKETSLDFSKVKTAAFGLLQKRKQLFSMGSN
NALLEFLLEGTPQIKEHLLDSRKEVDRQLKSVCEKYIKDAVQMLVGPLIT
FLEKAQSLLAQSTPATPQSPESTKASYVLRQSPWASPQQISSIIQETQRL
IKAKLAVLQRSMQLYLSNRDTEFIIFRPIRNNIIQSFVKLEQLLTTNGYS
TDDMIITSCPSAEQVSILLSSASILAAEGVASFAAAARKISTSSSVEGST
VGRKLSAMSNKSELVEEPKVEEVAGQIEVVPAEVQPPAKIEEEEVTETQT
QANSEASFLDH

BO08340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:30
Subject Length Description Subject Range Query Range Score Percent Strand
Cog3-PA 905 CG3248-PA 1..905 1..905 4550 100 Plus