Clone Sequence Records
BO08345.3prime Sequence
965 bp (805 high quality bases) assembled on 2006-01-06
> BO08345.3prime
ATGGTCTAGAAAGCTTGCGTTGAAAATCAAATCGTTGTAGTTGCGGAGCA
GGTGATAGGGAGACACACGGCAGCAGGTGGTGGTGCGCACCACGGTGATG
CGATCGGCACGCTCAAAGTTGGCCTTGACCGTCTCATAGTAGCGACCATC
GCTGAGCACCATGCAGCGCAGCTTGAGGCACTTGACGCGCAGAATATCGA
TGGCCTTCTGGCTCTTGTCGGAGAAGCGCAGGTTGTCCGGATCCCAGCGC
AGCTCCAGCCGCTCCAAGTTGCCGCAATTCGAGGCGATGGTGTCCATCAG
CTGGTCCACGTGGATGTTGACGCCCAGCTTCTCTGCGGTGCCCATAACAA
TGATCTTGCAGTTGCCCAGCAGGGGCAGGATGCTCATCCACAGCTGGTCG
GTGATGTGGGGCATGCCCGAGAGACAGCAGGCGCTCAGCTGATGACCCTG
GCGCTGTATAAACTTAAGCAGGCCCTCATCCGAGATGTTGTCCGAGGAGT
CCAAGTCCAGGGAAATGAGCGACCTGGTGGTGCCCGATTCCATCCACTGC
TTGAGAACGCTGTCGTTGAAGCCATTGATCTGGCCGGCTGAGAGGAACTT
GAGGCTGGGGATCCTGCTCAGCATGTCCACGAGGCATTCGGTCGAAAGAT
CGGTGGCCGTGATGTCCAGCTCCTGCAGGGCGCACTTGTCCCACTCGGCC
TGCATGACGAACTCCGACTTCAGGCTGGTGCCGTTCATGAGCAGGCAGGT
GAGGCGCTTGGAACGCTGGATCAGGGTCTTCAGGGTGGAGCCGGTCACTT
TGTTGCAGAAGTTGACGGCCAGGCACTCCAGCTGGATGCAGTTCGAGCTG
AAGGCGTCGATGTGCGAGTCATCGATGAAGTTGATGCCGTACAGGTTGAT
CACACGCAAATTGGGCGTGGCCGACTTGAGCTTGTGCACGTTGATCACCT
CGTAGATCTCCTCCT
BO08345.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-PB | 1536 | CG2010-RB | 587..1533 | 965..19 | 4735 | 100 | Minus |
| CG2010-PA | 1548 | CG2010-RA | 599..1545 | 965..19 | 4735 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:36:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 958..1904 | 965..19 | 4735 | 100 | Minus |
| CG2010-RA | 1910 | CG2010-RA | 736..1682 | 965..19 | 4735 | 100 | Minus |
| CG2010-RB | 2255 | CG2010-RB | 1081..2027 | 965..19 | 4735 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:36:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497564..29498007 | 965..522 | 2220 | 100 | Minus |
| 3R | 32079331 | 3R | 29498294..29498503 | 361..152 | 1035 | 99.5 | Minus |
| 3R | 32079331 | 3R | 29498062..29498232 | 525..355 | 855 | 100 | Minus |
| 3R | 32079331 | 3R | 29498560..29498695 | 154..19 | 680 | 100 | Minus |
Blast to na_te.dros performed 2015-02-03 12:36:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2601..2665 | 291..356 | 120 | 66.7 | Plus |
BO08345.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:36 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-PA | 599..1548 | 16..965 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:06 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-PA | 599..1548 | 16..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:51:53 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 1081..2032 | 13..965 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:42:55 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 1081..2032 | 13..965 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:42:55 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29497564..29498005 | 524..965 | 100 | -> | Minus |
| 3R | 29498064..29498231 | 356..523 | 100 | -> | Minus |
| 3R | 29498300..29498503 | 152..355 | 100 | -> | Minus |
| 3R | 29498563..29498700 | 13..151 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:51:53 Download gff for
BO08345.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25323286..25323727 | 524..965 | 100 | -> | Minus |
| arm_3R | 25323786..25323953 | 356..523 | 100 | -> | Minus |
| arm_3R | 25324022..25324225 | 152..355 | 100 | -> | Minus |
| arm_3R | 25324285..25324422 | 13..151 | 97 | | Minus |
BO08345.5prime Sequence
920 bp (892 high quality bases) assembled on 2006-01-06
> BO08345.5prime
GAAGTTATCAGTCGACATGGATAATTGGAATGTTTTGGCAGCGCAAACCT
CCTCGCAGGCCATCGGACTCCACGACTCTGGCGTGGTGAAGACCCGACTG
ACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGTATCT
GTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGGCGGC
AGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACCGGAG
GTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGATCTC
GGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAGCTGA
TCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTTGACC
CACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCAGCGA
GATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTCTCGG
AGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCATCAAC
GGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGGAGGA
GGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCA
CGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGATGAC
TCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCCTGGC
CGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTGATCC
AGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGCACCAGCCTGAAG
TCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGCCCTGCANGAGCT
GGACATCACGGGCACCGATC
BO08345.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-PB | 1536 | CG2010-RB | 1..904 | 17..920 | 4476 | 99.7 | Plus |
| CG2010-PA | 1548 | CG2010-RA | 96..916 | 100..920 | 4061 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 371..1275 | 16..920 | 4499 | 99.8 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 494..1398 | 16..920 | 4499 | 99.8 | Plus |
| CG2010-RA | 1910 | CG2010-RA | 233..1053 | 100..920 | 4079 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:36:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29497881 | 424..920 | 2459 | 99.6 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 100..425 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29495717..29495801 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:36:47 has no hits.
BO08345.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:37 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-PB | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:07 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-PB | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:03 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 494..1398 | 16..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:03 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 494..1398 | 16..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:03 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29495717..29495801 | 16..100 | 100 | -> | Plus |
| 3R | 29497000..29497324 | 101..425 | 100 | -> | Plus |
| 3R | 29497387..29497881 | 426..920 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:03 Download gff for
BO08345.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25321439..25321523 | 16..100 | 100 | -> | Plus |
| arm_3R | 25322722..25323046 | 101..425 | 100 | -> | Plus |
| arm_3R | 25323109..25323603 | 426..920 | 99 | | Plus |
BO08345.complete Sequence
1567 bp (1567 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631157
> BO08345.complete
GAAGTTATCAGTCGACATGGATAATTGGAATGTTTTGGCAGCGCAAACCT
CCTCGCAGGCCATCGGACTCCACGACTCTGGCGTGGTGAAGACCCGACTG
ACCATTGAGAAGCTGCCGGACAAGGTGCTGCTGCACATCTTCTCGTATCT
GTCGCACCGCGAGATCTGCCGCCTGGCCAGGATTTGCCGACGATGGCGGC
AGATTGCATACGACACGCGGCTGTGGAAGAACGTGAGCCTGCGACCGGAG
GTCTCCGGACTGCACGTGGGCTCGCTGGAGATGCTGCTGCAGCTGATCTC
GGTGAGATTCGGACCGACTCTGCGCTACATCGAGCTGCCCATCGAGCTGA
TCACGCACACGGTGCTCCACGAACTGTCCGCCAAGTGCCCCAATTTGACC
CACATGCTGCTGGACTTCTCCACAGCCATGCAGCTGCACGACTTCAGCGA
GATGCAGGCCTTTCCCACCAAGCTGCGCTACATGTGCGTCTGCCTCTCGG
AGGTGATCTTCATGGAGGGCTTCATGCGCAAAATCTACAACTTCATCAAC
GGCCTGGAGGTGCTGCATCTAATTGGCACGTACGAGAAGTGCGAGGAGGA
GGAGGAGGAGATCTACGAGGTGATCAACGTGCACAAGCTCAAGTCGGCCA
CGCCCAATTTGCGTGTGATCAACCTGTACGGCATCAACTTCATCGATGAC
TCGCACATCGACGCCTTCAGCTCGAACTGCATCCAGCTGGAGTGCCTGGC
CGTCAACTTCTGCAACAAAGTGACCGGCTCCACCCTGAAGACCCTGATCC
AGCGTTCCAAGCGCCTCACCTGCCTGCTCATGAACGGCACCAGCCTGAAG
TCGGAGTTCGTCATGCAGGCCGAGTGGGACAAGTGCGCCCTGCAGGAGCT
GGACATCACGGCCACCGATCTTTCGACCGAATGCCTCGTGGACATGCTGA
GCAGGATCCCCAGCCTCAAGTTCCTCTCAGCCGGCCAGATCAATGGCTTC
AACGACAGCGTTCTCAAGCAGTGGATGGAATCGGGCACCACCAGGTCGCT
CATTTCCCTGGACTTGGACTCCTCGGACAACATCTCGGATGAGGGCCTGC
TTAAGTTTATACAGCGCCAGGGTCATCAGCTGAGCGCCTGCTGTCTCTCG
GGCATGCCCCACATCACCGACCAGCTGTGGATGAGCATCCTGCCCCTGCT
GGGCAACTGCAAGATCATTGTTATGGGCACCGCAGAGAAGCTGGGCGTCA
ACATCCACGTGGACCAGCTGATGGACACCATCGCCTCGAATTGCGGCAAC
TTGGAGCGGCTGGAGCTGCGCTGGGATCCGGACAACCTGCGCTTCTCCGA
CAAGAGCCAGAAGGCCATCGATATTCTGCGCGTCAAGTGCCTCAAGCTGC
GCTGCATGGTGCTCAGCGATGGTCGCTACTATGAGACGGTCAAGGCCAAC
TTTGAGCGTGCCGATCGCATCACCGTGGTGCGCACCACCACCTGCTGCCG
TGTGTCTCCCTATCACCTGCTCCGCAACTACAACGATTTGATTTTCAACG
CAAGCTTTCTAGACCAT
BO08345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:35:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 1536 | CG2010-PC | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| CG2010-RB | 1536 | CG2010-PB | 1..1533 | 17..1549 | 7665 | 100 | Plus |
| CG2010-RA | 1548 | CG2010-PA | 96..1545 | 100..1549 | 7250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:35:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-RC | 2132 | CG2010-RC | 371..1904 | 16..1549 | 7670 | 100 | Plus |
| CG2010-RB | 2255 | CG2010-RB | 494..2027 | 16..1549 | 7670 | 100 | Plus |
| CG2010-RA | 1910 | CG2010-RA | 233..1682 | 100..1549 | 7250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:34:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29497385..29498007 | 424..1046 | 3115 | 100 | Plus |
| 3R | 32079331 | 3R | 29496999..29497324 | 100..425 | 1630 | 100 | Plus |
| 3R | 32079331 | 3R | 29498294..29498503 | 1207..1416 | 1035 | 99.5 | Plus |
| 3R | 32079331 | 3R | 29498062..29498232 | 1043..1213 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 29498560..29498695 | 1414..1549 | 680 | 100 | Plus |
| 3R | 32079331 | 3R | 29495717..29495801 | 16..100 | 425 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:35:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G5 | 4856 | G5 G5_DM 4856bp | 2601..2665 | 1277..1212 | 120 | 66.7 | Minus |
BO08345.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:32 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 1..1536 | 17..1552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:06 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 474..2012 | 16..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:32:32 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 495..2027 | 17..1551 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:33 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 474..2012 | 16..1555 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:35 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2010-RB | 495..2027 | 17..1551 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:35 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29495718..29495801 | 17..100 | 100 | -> | Plus |
| 3R | 29497000..29497324 | 101..425 | 100 | -> | Plus |
| 3R | 29497387..29498005 | 426..1044 | 100 | -> | Plus |
| 3R | 29498064..29498231 | 1045..1212 | 100 | -> | Plus |
| 3R | 29498300..29498503 | 1213..1416 | 100 | -> | Plus |
| 3R | 29498563..29498695 | 1417..1551 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:32:32 Download gff for
BO08345.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25321440..25321523 | 17..100 | 100 | -> | Plus |
| arm_3R | 25322722..25323046 | 101..425 | 100 | -> | Plus |
| arm_3R | 25323109..25323727 | 426..1044 | 100 | -> | Plus |
| arm_3R | 25323786..25323953 | 1045..1212 | 100 | -> | Plus |
| arm_3R | 25324022..25324225 | 1213..1416 | 100 | -> | Plus |
| arm_3R | 25324285..25324417 | 1417..1551 | 98 | | Plus |
BO08345.pep Sequence
Translation from 16 to 1567
> BO08345.pep
MDNWNVLAAQTSSQAIGLHDSGVVKTRLTIEKLPDKVLLHIFSYLSHREI
CRLARICRRWRQIAYDTRLWKNVSLRPEVSGLHVGSLEMLLQLISVRFGP
TLRYIELPIELITHTVLHELSAKCPNLTHMLLDFSTAMQLHDFSEMQAFP
TKLRYMCVCLSEVIFMEGFMRKIYNFINGLEVLHLIGTYEKCEEEEEEIY
EVINVHKLKSATPNLRVINLYGINFIDDSHIDAFSSNCIQLECLAVNFCN
KVTGSTLKTLIQRSKRLTCLLMNGTSLKSEFVMQAEWDKCALQELDITAT
DLSTECLVDMLSRIPSLKFLSAGQINGFNDSVLKQWMESGTTRSLISLDL
DSSDNISDEGLLKFIQRQGHQLSACCLSGMPHITDQLWMSILPLLGNCKI
IVMGTAEKLGVNIHVDQLMDTIASNCGNLERLELRWDPDNLRFSDKSQKA
IDILRVKCLKLRCMVLSDGRYYETVKANFERADRITVVRTTTCCRVSPYH
LLRNYNDLIFNASFLDH
BO08345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2010-PC | 511 | CG2010-PC | 1..511 | 1..511 | 2664 | 100 | Plus |
| CG2010-PB | 511 | CG2010-PB | 1..511 | 1..511 | 2664 | 100 | Plus |
| CG2010-PA | 515 | CG2010-PA | 6..515 | 2..511 | 2529 | 95.5 | Plus |
