Clone Sequence Records
BO08352.3prime Sequence
907 bp (793 high quality bases) assembled on 2006-01-06
> BO08352.3prime
ATGGTCTAGAAAGCTTGCGTTCCTTTGAACAAGTTTAATCCAAAAGCCGC
CTTTGGGTGACAACTGAAAACCGGAAGTAATGAGCTCTAGTGGAATGCAG
GATTTCTTGGCAGGGGCAAAGCGGTAGTCCTTCAAAAGATAGTAGATAAC
AGCCTTTGCTTCAAGTAGAGCGAATCGGGAACCAATGCAGTTGCGTTGAC
CCAGGCCAAAGGGGAAGTATGTGAATGGCTGAATAGACTCCTTGTTCTCA
TCGCTAAAACGTTCCGGATCGAACTTCATAGGGTTCTCAAAGTACTTGGG
ATCACGATGGAAGCCGCATGTAGGCAGCCAGATGACATCGCCCTTCTTGA
CCTCGACTTTCTGGCCATCCACATCGAAGGTGATATCCTTGTTGCATTCT
CGATCGACGGCAATTGCCGCCGGCCACTTTCGCAGAACCTCGTTGACGAC
CTGATCCAGATACTTCATGCCCATAATTGCCTCATAGGTCAGTTCTTTGC
CCTCCAGGTCTTGGTCCACTTGCTGTACCTCCTCGTATAGCCTCTGCTGC
ACATCCTGGTTCTCCATTAGCTCGTGAGCGGTGAAGCACATCAGCACCGC
CGAAGTCTCGAAGCCAGCAAAGAAGAACACGAAACACTGGGCGACAATGT
CGCGATCGCTCCACTCGCGAACGGCAGATGCCTTGGTCTTCTCCGTCTGG
ATGATACCACGAGCCTCCATCAGCATGTTTATCATGTCGGGACGTACAAT
ATTGTGCTCCTGTCGGTATTTCATAGCATCGAGCACCAGACGCACGAAAT
ACTGAGTGCTTTTCCTATCGAAAAGCTCGACCTTAAGGATCTTATTAAGA
CCCTTCAATGCGAAGACAACATGAACTTCATGCTCTGCAGGAATGTAAAT
GTGGTCA
BO08352.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11466-PA | 1551 | Cyp9f2-RA | 701..1548 | 866..19 | 4240 | 100 | Minus |
CG11466-PB | 1308 | Cyp9f2-RB | 458..1305 | 866..19 | 4240 | 100 | Minus |
CG11466-PA | 1551 | Cyp9f2-RA | 659..700 | 907..866 | 210 | 100 | Minus |
CG11466-PB | 1308 | Cyp9f2-RB | 416..457 | 907..866 | 210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 779..1668 | 907..19 | 4425 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12403649..12404310 | 181..842 | 3310 | 100 | Plus |
3R | 32079331 | 3R | 12396914..12397268 | 489..843 | 1745 | 99.4 | Plus |
3R | 32079331 | 3R | 12403430..12403594 | 19..183 | 825 | 100 | Plus |
3R | 32079331 | 3R | 12396693..12396836 | 19..162 | 690 | 98.6 | Plus |
3R | 32079331 | 3R | 12396835..12396916 | 386..467 | 350 | 95.1 | Plus |
3R | 32079331 | 3R | 12404370..12404437 | 841..907 | 290 | 98.5 | Plus |
3R | 32079331 | 3R | 12397334..12397401 | 841..907 | 230 | 92.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:09:00 has no hits.
BO08352.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:50 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PB | 417..1308 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:25 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PB | 417..1308 | 15..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:46 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 780..1678 | 7..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:59 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 780..1678 | 7..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:59 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12403420..12403593 | 7..182 | 97 | <- | Plus |
3R | 12403651..12404308 | 183..840 | 100 | <- | Plus |
3R | 12404370..12404436 | 841..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:46 Download gff for
BO08352.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8229142..8229315 | 7..182 | 97 | <- | Plus |
arm_3R | 8229373..8230030 | 183..840 | 100 | <- | Plus |
arm_3R | 8230092..8230158 | 841..906 | 98 | | Plus |
BO08352.5prime Sequence
906 bp (871 high quality bases) assembled on 2006-01-06
> BO08352.5prime
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GCATCT
BO08352.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11466-PA | 1551 | Cyp9f2-RA | 1..885 | 17..901 | 4425 | 100 | Plus |
CG11466-PB | 1308 | Cyp9f2-RB | 1..642 | 260..901 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 115..1011 | 11..906 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12404370..12404889 | 742..223 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 12397334..12397853 | 742..223 | 2390 | 97.3 | Minus |
3R | 32079331 | 3R | 12405703..12405914 | 222..11 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 12398675..12398877 | 217..15 | 880 | 95.6 | Minus |
3R | 32079331 | 3R | 12404150..12404310 | 901..741 | 805 | 100 | Minus |
3R | 32079331 | 3R | 12397107..12397268 | 901..740 | 795 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:32:34 has no hits.
BO08352.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:51 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:27 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11466-PA | 1..891 | 17..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:06:20 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 111..1011 | 6..906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:17 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 111..1011 | 6..906 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:17 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12404144..12404308 | 743..906 | 99 | <- | Minus |
3R | 12404370..12404889 | 223..742 | 100 | <- | Minus |
3R | 12405703..12405918 | 6..222 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:06:20 Download gff for
BO08352.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8229866..8230030 | 743..906 | 99 | <- | Minus |
arm_3R | 8230092..8230611 | 223..742 | 100 | <- | Minus |
arm_3R | 8231425..8231640 | 6..222 | 98 | | Minus |
BO08352.complete Sequence
1582 bp (1582 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631158
> BO08352.complete
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GGCATCTGCCGTTCGCGAGTGGAGCGATCGCGACATTGTCGCCCAGTGTT
TCGTGTTCTTCTTTGCTGGCTTCGAGACTTCGGCGGTGCTGATGTGCTTC
ACCGCTCACGAGCTAATGGAGAACCAGGATGTGCAGCAGAGGCTATACGA
GGAGGTACAGCAAGTGGACCAAGACCTGGAGGGCAAAGAACTGACCTATG
AGGCAATTATGGGCATGAAGTATCTGGATCAGGTCGTCAACGAGGTTCTG
CGAAAGTGGCCGGCGGCAATTGCCGTCGATCGAGAATGCAACAAGGATAT
CACCTTCGATGTGGATGGCCAGAAAGTCGAGGTCAAGAAGGGCGATGTCA
TCTGGCTGCCTACATGCGGCTTCCATCGTGATCCCAAGTACTTTGAGAAC
CCTATGAAGTTCGATCCGGAACGTTTTAGCGATGAGAACAAGGAGTCTAT
TCAGCCATTCACATACTTCCCCTTTGGCCTGGGTCAACGCAACTGCATTG
GTTCCCGATTCGCTCTACTTGAAGCAAAGGCTGTTATCTACTATCTTTTG
AAGGACTACCGCTTTGCCCCTGCCAAGAAATCCTGCATTCCACTAGAGCT
CATTACTTCCGGTTTTCAGTTGTCACCCAAAGGCGGCTTTTGGATTAAAC
TTGTTCAAAGGAACGCAAGCTTTCTAGACCAT
BO08352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1551 | CG11466-PA | 1..1548 | 17..1564 | 7740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-RA | 1758 | CG11466-RA | 115..1668 | 11..1564 | 7755 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12403649..12404310 | 1402..741 | 3310 | 100 | Minus |
3R | 32079331 | 3R | 12404370..12404889 | 742..223 | 2600 | 100 | Minus |
3R | 32079331 | 3R | 12397334..12397853 | 742..223 | 2390 | 97.3 | Minus |
3R | 32079331 | 3R | 12396914..12397268 | 1094..740 | 1745 | 99.4 | Minus |
3R | 32079331 | 3R | 12405703..12405914 | 222..11 | 1045 | 99.5 | Minus |
3R | 32079331 | 3R | 12398675..12398877 | 217..15 | 880 | 95.6 | Minus |
3R | 32079331 | 3R | 12403430..12403594 | 1564..1400 | 825 | 100 | Minus |
3R | 32079331 | 3R | 12396693..12396836 | 1564..1421 | 690 | 98.6 | Minus |
3R | 32079331 | 3R | 12396835..12396916 | 1197..1116 | 350 | 95.1 | Minus |
Blast to na_te.dros performed on 2014-11-27 17:01:45 has no hits.
BO08352.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:34 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 1..1551 | 17..1568 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:07 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 170..1737 | 6..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:30 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 126..1668 | 22..1566 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:34 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 170..1737 | 6..1576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:43 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp9f2-RA | 126..1668 | 22..1566 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:43 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12403428..12403593 | 1401..1566 | 98 | <- | Minus |
3R | 12403651..12404308 | 743..1400 | 100 | <- | Minus |
3R | 12404370..12404889 | 223..742 | 100 | <- | Minus |
3R | 12405703..12405903 | 22..222 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:30 Download gff for
BO08352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8231425..8231625 | 22..222 | 100 | | Minus |
arm_3R | 8229150..8229315 | 1401..1566 | 98 | <- | Minus |
arm_3R | 8229373..8230030 | 743..1400 | 100 | <- | Minus |
arm_3R | 8230092..8230611 | 223..742 | 100 | <- | Minus |
BO08352.pep Sequence
Translation from 16 to 1582
> BO08352.pep
MLWEFFALFAIAAALFYRWASANNDFFKDRGIAYEKPVLYFGNMAGMFLR
KRAMFDIVCDLYTKGGSKKFFGIFEQRQPLLMVRDPDLIKQITIKDFDHF
INHRNVFATSSDDDPHDMSNLFGSSLFSMRDARWKDMRSTLSPAFTGSKM
RQMFQLMNQVAKEAVDCLKQDDSRVQENELDMKDYCTRFTNDVIASTAFG
LQVNSFKDRENTFYQMGKKLTTFTFLQSMKFMLFFALKGLNKILKVELFD
RKSTQYFVRLVLDAMKYRQEHNIVRPDMINMLMEARGIIQTEKTKASAVR
EWSDRDIVAQCFVFFFAGFETSAVLMCFTAHELMENQDVQQRLYEEVQQV
DQDLEGKELTYEAIMGMKYLDQVVNEVLRKWPAAIAVDRECNKDITFDVD
GQKVEVKKGDVIWLPTCGFHRDPKYFENPMKFDPERFSDENKESIQPFTY
FPFGLGQRNCIGSRFALLEAKAVIYYLLKDYRFAPAKKSCIPLELITSGF
QLSPKGGFWIKLVQRNASFLDH
BO08352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp9f2-PA | 516 | CG11466-PA | 1..516 | 1..516 | 2714 | 100 | Plus |
Cyp9b2-PA | 505 | CG4486-PA | 3..504 | 2..515 | 1120 | 43.5 | Plus |
Cyp9b1-PA | 505 | CG4485-PA | 5..504 | 4..515 | 1100 | 42.6 | Plus |
Cyp9h1-PA | 518 | CG17577-PA | 9..517 | 7..515 | 1090 | 43.2 | Plus |
Cyp9c1-PA | 522 | CG3616-PA | 5..519 | 4..515 | 1063 | 42.4 | Plus |