Clone BO08352 Report

Search the DGRC for BO08352

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCyp9f2-RA
Protein status:BO08352.pep: validated full length
Sequenced Size:1582

Clone Sequence Records

BO08352.3prime Sequence

907 bp (793 high quality bases) assembled on 2006-01-06

> BO08352.3prime
ATGGTCTAGAAAGCTTGCGTTCCTTTGAACAAGTTTAATCCAAAAGCCGC
CTTTGGGTGACAACTGAAAACCGGAAGTAATGAGCTCTAGTGGAATGCAG
GATTTCTTGGCAGGGGCAAAGCGGTAGTCCTTCAAAAGATAGTAGATAAC
AGCCTTTGCTTCAAGTAGAGCGAATCGGGAACCAATGCAGTTGCGTTGAC
CCAGGCCAAAGGGGAAGTATGTGAATGGCTGAATAGACTCCTTGTTCTCA
TCGCTAAAACGTTCCGGATCGAACTTCATAGGGTTCTCAAAGTACTTGGG
ATCACGATGGAAGCCGCATGTAGGCAGCCAGATGACATCGCCCTTCTTGA
CCTCGACTTTCTGGCCATCCACATCGAAGGTGATATCCTTGTTGCATTCT
CGATCGACGGCAATTGCCGCCGGCCACTTTCGCAGAACCTCGTTGACGAC
CTGATCCAGATACTTCATGCCCATAATTGCCTCATAGGTCAGTTCTTTGC
CCTCCAGGTCTTGGTCCACTTGCTGTACCTCCTCGTATAGCCTCTGCTGC
ACATCCTGGTTCTCCATTAGCTCGTGAGCGGTGAAGCACATCAGCACCGC
CGAAGTCTCGAAGCCAGCAAAGAAGAACACGAAACACTGGGCGACAATGT
CGCGATCGCTCCACTCGCGAACGGCAGATGCCTTGGTCTTCTCCGTCTGG
ATGATACCACGAGCCTCCATCAGCATGTTTATCATGTCGGGACGTACAAT
ATTGTGCTCCTGTCGGTATTTCATAGCATCGAGCACCAGACGCACGAAAT
ACTGAGTGCTTTTCCTATCGAAAAGCTCGACCTTAAGGATCTTATTAAGA
CCCTTCAATGCGAAGACAACATGAACTTCATGCTCTGCAGGAATGTAAAT
GTGGTCA

BO08352.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG11466-PA 1551 Cyp9f2-RA 701..1548 866..19 4240 100 Minus
CG11466-PB 1308 Cyp9f2-RB 458..1305 866..19 4240 100 Minus
CG11466-PA 1551 Cyp9f2-RA 659..700 907..866 210 100 Minus
CG11466-PB 1308 Cyp9f2-RB 416..457 907..866 210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 779..1668 907..19 4425 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:08:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12403649..12404310 181..842 3310 100 Plus
3R 32079331 3R 12396914..12397268 489..843 1745 99.4 Plus
3R 32079331 3R 12403430..12403594 19..183 825 100 Plus
3R 32079331 3R 12396693..12396836 19..162 690 98.6 Plus
3R 32079331 3R 12396835..12396916 386..467 350 95.1 Plus
3R 32079331 3R 12404370..12404437 841..907 290 98.5 Plus
3R 32079331 3R 12397334..12397401 841..907 230 92.6 Plus
Blast to na_te.dros performed on 2015-02-12 04:09:00 has no hits.

BO08352.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:50 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PB 417..1308 15..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:25 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PB 417..1308 15..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:00:46 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 780..1678 7..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:48:59 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 780..1678 7..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:48:59 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12403420..12403593 7..182 97 <- Plus
3R 12403651..12404308 183..840 100 <- Plus
3R 12404370..12404436 841..906 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:00:46 Download gff for BO08352.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8229142..8229315 7..182 97 <- Plus
arm_3R 8229373..8230030 183..840 100 <- Plus
arm_3R 8230092..8230158 841..906 98   Plus

BO08352.5prime Sequence

906 bp (871 high quality bases) assembled on 2006-01-06

> BO08352.5prime
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GCATCT

BO08352.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG11466-PA 1551 Cyp9f2-RA 1..885 17..901 4425 100 Plus
CG11466-PB 1308 Cyp9f2-RB 1..642 260..901 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:32:36
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 115..1011 11..906 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12404370..12404889 742..223 2600 100 Minus
3R 32079331 3R 12397334..12397853 742..223 2390 97.3 Minus
3R 32079331 3R 12405703..12405914 222..11 1045 99.5 Minus
3R 32079331 3R 12398675..12398877 217..15 880 95.6 Minus
3R 32079331 3R 12404150..12404310 901..741 805 100 Minus
3R 32079331 3R 12397107..12397268 901..740 795 99.4 Minus
Blast to na_te.dros performed on 2015-02-12 04:32:34 has no hits.

BO08352.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:51 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:27 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11466-PA 1..891 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:06:20 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 111..1011 6..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:17 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 111..1011 6..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:17 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12404144..12404308 743..906 99 <- Minus
3R 12404370..12404889 223..742 100 <- Minus
3R 12405703..12405918 6..222 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:06:20 Download gff for BO08352.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8229866..8230030 743..906 99 <- Minus
arm_3R 8230092..8230611 223..742 100 <- Minus
arm_3R 8231425..8231640 6..222 98   Minus

BO08352.complete Sequence

1582 bp (1582 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631158

> BO08352.complete
GAAGTTATCAGTCGACATGTTGTGGGAGTTCTTCGCCCTATTTGCGATCG
CTGCCGCCTTGTTCTACCGTTGGGCGTCCGCCAACAATGATTTCTTCAAG
GATAGGGGCATCGCCTATGAAAAGCCAGTGCTCTACTTTGGCAACATGGC
CGGCATGTTCCTGCGGAAGAGGGCCATGTTTGACATAGTCTGTGATCTCT
ACACCAAAGGCGGAAGTAAGAAATTTTTTGGTATCTTTGAGCAGCGACAA
CCACTTTTAATGGTGCGCGACCCAGATCTTATCAAGCAGATAACCATAAA
GGACTTCGATCACTTTATCAATCATCGCAATGTGTTTGCCACCAGCAGCG
ATGATGATCCACATGACATGAGTAACCTTTTCGGCAGCTCGCTGTTCTCC
ATGCGAGATGCTCGGTGGAAGGATATGCGAAGCACTCTGAGTCCGGCATT
TACAGGCAGCAAAATGCGTCAGATGTTCCAGCTGATGAACCAGGTGGCCA
AGGAGGCCGTGGACTGTCTTAAGCAGGATGATTCAAGGGTTCAGGAGAAT
GAACTGGACATGAAGGACTACTGCACACGATTCACCAATGATGTGATCGC
CTCGACAGCCTTTGGACTGCAAGTGAACTCGTTCAAGGATCGCGAAAATA
CCTTCTATCAGATGGGAAAAAAGCTGACCACATTTACATTCCTGCAGAGC
ATGAAGTTCATGTTGTTCTTCGCATTGAAGGGTCTTAATAAGATCCTTAA
GGTCGAGCTTTTCGATAGGAAAAGCACTCAGTATTTCGTGCGTCTGGTGC
TCGATGCTATGAAATACCGACAGGAGCACAATATTGTACGTCCCGACATG
ATAAACATGCTGATGGAGGCTCGTGGTATCATCCAGACGGAGAAGACCAA
GGCATCTGCCGTTCGCGAGTGGAGCGATCGCGACATTGTCGCCCAGTGTT
TCGTGTTCTTCTTTGCTGGCTTCGAGACTTCGGCGGTGCTGATGTGCTTC
ACCGCTCACGAGCTAATGGAGAACCAGGATGTGCAGCAGAGGCTATACGA
GGAGGTACAGCAAGTGGACCAAGACCTGGAGGGCAAAGAACTGACCTATG
AGGCAATTATGGGCATGAAGTATCTGGATCAGGTCGTCAACGAGGTTCTG
CGAAAGTGGCCGGCGGCAATTGCCGTCGATCGAGAATGCAACAAGGATAT
CACCTTCGATGTGGATGGCCAGAAAGTCGAGGTCAAGAAGGGCGATGTCA
TCTGGCTGCCTACATGCGGCTTCCATCGTGATCCCAAGTACTTTGAGAAC
CCTATGAAGTTCGATCCGGAACGTTTTAGCGATGAGAACAAGGAGTCTAT
TCAGCCATTCACATACTTCCCCTTTGGCCTGGGTCAACGCAACTGCATTG
GTTCCCGATTCGCTCTACTTGAAGCAAAGGCTGTTATCTACTATCTTTTG
AAGGACTACCGCTTTGCCCCTGCCAAGAAATCCTGCATTCCACTAGAGCT
CATTACTTCCGGTTTTCAGTTGTCACCCAAAGGCGGCTTTTGGATTAAAC
TTGTTCAAAGGAACGCAAGCTTTCTAGACCAT

BO08352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1551 CG11466-PA 1..1548 17..1564 7740 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:01:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-RA 1758 CG11466-RA 115..1668 11..1564 7755 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:01:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12403649..12404310 1402..741 3310 100 Minus
3R 32079331 3R 12404370..12404889 742..223 2600 100 Minus
3R 32079331 3R 12397334..12397853 742..223 2390 97.3 Minus
3R 32079331 3R 12396914..12397268 1094..740 1745 99.4 Minus
3R 32079331 3R 12405703..12405914 222..11 1045 99.5 Minus
3R 32079331 3R 12398675..12398877 217..15 880 95.6 Minus
3R 32079331 3R 12403430..12403594 1564..1400 825 100 Minus
3R 32079331 3R 12396693..12396836 1564..1421 690 98.6 Minus
3R 32079331 3R 12396835..12396916 1197..1116 350 95.1 Minus
Blast to na_te.dros performed on 2014-11-27 17:01:45 has no hits.

BO08352.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:34 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 1..1551 17..1568 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:31:07 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 170..1737 6..1576 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:30 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 126..1668 22..1566 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:34 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 170..1737 6..1576 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:32:43 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp9f2-RA 126..1668 22..1566 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:32:43 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12403428..12403593 1401..1566 98 <- Minus
3R 12403651..12404308 743..1400 100 <- Minus
3R 12404370..12404889 223..742 100 <- Minus
3R 12405703..12405903 22..222 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:30 Download gff for BO08352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8231425..8231625 22..222 100   Minus
arm_3R 8229150..8229315 1401..1566 98 <- Minus
arm_3R 8229373..8230030 743..1400 100 <- Minus
arm_3R 8230092..8230611 223..742 100 <- Minus

BO08352.pep Sequence

Translation from 16 to 1582

> BO08352.pep
MLWEFFALFAIAAALFYRWASANNDFFKDRGIAYEKPVLYFGNMAGMFLR
KRAMFDIVCDLYTKGGSKKFFGIFEQRQPLLMVRDPDLIKQITIKDFDHF
INHRNVFATSSDDDPHDMSNLFGSSLFSMRDARWKDMRSTLSPAFTGSKM
RQMFQLMNQVAKEAVDCLKQDDSRVQENELDMKDYCTRFTNDVIASTAFG
LQVNSFKDRENTFYQMGKKLTTFTFLQSMKFMLFFALKGLNKILKVELFD
RKSTQYFVRLVLDAMKYRQEHNIVRPDMINMLMEARGIIQTEKTKASAVR
EWSDRDIVAQCFVFFFAGFETSAVLMCFTAHELMENQDVQQRLYEEVQQV
DQDLEGKELTYEAIMGMKYLDQVVNEVLRKWPAAIAVDRECNKDITFDVD
GQKVEVKKGDVIWLPTCGFHRDPKYFENPMKFDPERFSDENKESIQPFTY
FPFGLGQRNCIGSRFALLEAKAVIYYLLKDYRFAPAKKSCIPLELITSGF
QLSPKGGFWIKLVQRNASFLDH

BO08352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:04
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp9f2-PA 516 CG11466-PA 1..516 1..516 2714 100 Plus
Cyp9b2-PA 505 CG4486-PA 3..504 2..515 1120 43.5 Plus
Cyp9b1-PA 505 CG4485-PA 5..504 4..515 1100 42.6 Plus
Cyp9h1-PA 518 CG17577-PA 9..517 7..515 1090 43.2 Plus
Cyp9c1-PA 522 CG3616-PA 5..519 4..515 1063 42.4 Plus