Clone Sequence Records
BO08355.3prime Sequence
953 bp (876 high quality bases) assembled on 2006-01-06
> BO08355.3prime
ATGGTCTAGAAAGCTTGCATGGCGCGAGTCCCTAGGGTAGAATTCGGCCA
GGATGGAGGCCGGGATACGCTTGAGCATCTCCTTGGGGAAGATACGCAGC
AGCTGCCAGCCAATGTCCAGGGATTCGAAGACAGTGCGGTTCTCATAGTT
GCCCTGCGAGATGAAGTTCTTCTCGAACTTGGTCAAGAACTCCAGATACA
GCAGATCGTCGGGCGTCAGGGCCTCCTCACCCACCACAGCCTTCATGGCC
TGCACGTCCTTGCCGATGGCGTAGCAAGCGTACAGCTGGTTGGACACGTC
AGAGTGGTCCTTACGGGTCATGCCCTCGCCGATGGCAGACTTCATCAAAC
GCGACAGCGATGGCAGCACGTTGACTGGTGGGTAGATCTGTCTGTTGTGC
AGCTGACGATCGACGTAGATCTGGCCCTCGGTAATGTAACCGGTCAAATC
GGGAATGGGATGGGTAATATCATCGTTAGGCATGGTCAGAATGGGGATCT
GGGTGATGGATCCGTTGCGTCCCTCCACACGACCGGCACGCTCGTAGATG
GTGGCCAAATCGGTGTACATGTAACCGGGGAAACCACGACGACCGGGCAC
CTCCTCACGGGCAGCAGACACCTCACGCAGAGCCTCGGCGTACGAGGACA
TGTCGGTAAGGATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAAC
TCGGCGGCAGTCAAAGCCAGGCGGGGAGTGATGATACGCTCGATGGTCGG
ATCGTTGGCCAAGTTCAAGAACAGACACACGTTCTCCATGGAACCGTTCT
CCTCGAAGTCCTGCTTGAAGAATCGGGCAGTCTCCATGTTCACACCCATA
GCGGCGAACACGATGGCGAAGTTGTCGGTGTGGTCATCCAGCACGGACTT
GCCCGGCAGCTTGACGAGACCGGCCTGACGACAGATCTGGGGCGGCGATT
TCG
BO08355.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17369-PB | 1473 | Vha55-RB | 548..1470 | 941..19 | 4615 | 100 | Minus |
CG17369-PA | 1473 | Vha55-RA | 548..1470 | 941..19 | 4615 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha55-RC | 2048 | CG17369-RC | 652..1585 | 953..19 | 4650 | 99.9 | Minus |
Vha55-RA | 2658 | CG17369-RA | 717..1650 | 953..19 | 4650 | 99.9 | Minus |
Vha55-RB | 2722 | CG17369-RB | 781..1714 | 953..19 | 4650 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12624965..12625764 | 153..953 | 3955 | 99.9 | Plus |
3R | 32079331 | 3R | 12624770..12624908 | 19..157 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:10:35 has no hits.
BO08355.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:55 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-PB | 537..1473 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:34 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17369-PA | 537..1473 | 18..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:04:27 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 781..1714 | 19..953 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:57 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 781..1714 | 19..953 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:57 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12624770..12624904 | 19..153 | 100 | <- | Plus |
3R | 12624966..12625764 | 154..953 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:04:27 Download gff for
BO08355.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8450492..8450626 | 19..153 | 100 | <- | Plus |
arm_3R | 8450688..8451486 | 154..953 | 99 | | Plus |
BO08355.5prime Sequence
948 bp (808 high quality bases) assembled on 2006-01-06
> BO08355.5prime
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCGGTTACATGTACACCGATTTT
BO08355.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17369-PB | 1473 | Vha55-RB | 1..911 | 17..927 | 4555 | 100 | Plus |
CG17369-PA | 1473 | Vha55-RA | 1..911 | 17..927 | 4555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha55-RC | 2048 | CG17369-RC | 116..1047 | 17..947 | 4635 | 99.9 | Plus |
Vha55-RA | 2658 | CG17369-RA | 181..1112 | 17..947 | 4635 | 99.9 | Plus |
Vha55-RB | 2722 | CG17369-RB | 245..1176 | 17..947 | 4635 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12625369..12626227 | 947..90 | 4245 | 99.9 | Minus |
3R | 32079331 | 3R | 12627449..12627521 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:57:27 has no hits.
BO08355.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:56 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-PB | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:35 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17369-PA | 1..932 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:15 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 245..1176 | 17..948 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:08 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 245..1176 | 17..948 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:08 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12625368..12626227 | 90..948 | 99 | <- | Minus |
3R | 12627449..12627521 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:15 Download gff for
BO08355.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8451090..8451949 | 90..948 | 99 | <- | Minus |
arm_3R | 8453171..8453243 | 17..89 | 100 | | Minus |
BO08355.complete Sequence
1504 bp (1504 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631159
> BO08355.complete
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCCGGTTACATGTACACCGATTTGG
CCACCATCTACGAGCGTGCCGGTCGTGTGGAGGGACGCAACGGATCCATC
ACCCAGATCCCCATTCTGACCATGCCTAACGATGATATTACCCATCCCAT
TCCCGATTTGACCGGTTACATTACCGAGGGCCAGATCTACGTCGATCGTC
AGCTGCACAACAGACAGATCTACCCACCAGTCAACGTGCTGCCATCGCTG
TCGCGTTTGATGAAGTCTGCCATCGGCGAGGGCATGACCCGTAAGGACCA
CTCTGACGTGTCCAACCAGCTGTACGCTTGCTACGCCATCGGCAAGGACG
TGCAGGCCATGAAGGCTGTGGTGGGTGAGGAGGCCCTGACGCCCGACGAT
CTGCTGTATCTGGAGTTCTTGACCAAGTTCGAGAAGAACTTCATCTCGCA
GGGCAACTATGAGAACCGCACTGTCTTCGAATCCCTGGACATTGGCTGGC
AGCTGCTGCGTATCTTCCCCAAGGAGATGCTCAAGCGTATCCCGGCCTCC
ATCCTGGCCGAATTCTACCCTAGGGACTCGCGCCATGCAAGCTTTCTAGA
CCAT
BO08355.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha55-RC | 1473 | CG17369-PC | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Vha55-RA | 1473 | CG17369-PA | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Vha55-RB | 1473 | CG17369-PB | 1..1470 | 17..1486 | 7350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha55-RC | 2048 | CG17369-RC | 116..1585 | 17..1486 | 7350 | 100 | Plus |
Vha55-RA | 2658 | CG17369-RA | 181..1650 | 17..1486 | 7350 | 100 | Plus |
Vha55-RB | 2722 | CG17369-RB | 245..1714 | 17..1486 | 7350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 12624965..12626227 | 1352..90 | 6315 | 100 | Minus |
3R | 32079331 | 3R | 12624770..12624908 | 1486..1348 | 695 | 100 | Minus |
3R | 32079331 | 3R | 12627449..12627521 | 89..17 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:10:05 has no hits.
BO08355.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:20 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RA | 1..1473 | 17..1487 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:44 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RA | 181..1650 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:55 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 245..1714 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:20 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RA | 181..1650 | 17..1486 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:20 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Vha55-RB | 245..1714 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:20 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 12624768..12624904 | 1352..1488 | 98 | <- | Minus |
3R | 12624966..12626227 | 90..1351 | 100 | <- | Minus |
3R | 12627449..12627521 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:55 Download gff for
BO08355.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 8450490..8450626 | 1352..1488 | 98 | <- | Minus |
arm_3R | 8450688..8451949 | 90..1351 | 100 | <- | Minus |
arm_3R | 8453171..8453243 | 17..89 | 100 | | Minus |
BO08355.pep Sequence
Translation from 16 to 1504
> BO08355.pep
MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEI
VQLRLADGTVRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRT
PVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQ
TGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVL
DDHTDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIE
RIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR
RGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTG
YITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN
QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYEN
RTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDSRHASFLDH
BO08355.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Vha55-PC | 490 | CG17369-PC | 1..490 | 1..490 | 2515 | 100 | Plus |
Vha55-PA | 490 | CG17369-PA | 1..490 | 1..490 | 2515 | 100 | Plus |
Vha55-PB | 490 | CG17369-PB | 1..490 | 1..490 | 2515 | 100 | Plus |
ATPsyn-beta-PD | 505 | CG11154-PD | 73..443 | 65..445 | 285 | 26.3 | Plus |
ATPsyn-beta-PA | 505 | CG11154-PA | 73..443 | 65..445 | 285 | 26.3 | Plus |