Clone BO08355 Report

Search the DGRC for BO08355

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptVha55-RA
Protein status:BO08355.pep: validated full length
Sequenced Size:1504

Clone Sequence Records

BO08355.3prime Sequence

953 bp (876 high quality bases) assembled on 2006-01-06

> BO08355.3prime
ATGGTCTAGAAAGCTTGCATGGCGCGAGTCCCTAGGGTAGAATTCGGCCA
GGATGGAGGCCGGGATACGCTTGAGCATCTCCTTGGGGAAGATACGCAGC
AGCTGCCAGCCAATGTCCAGGGATTCGAAGACAGTGCGGTTCTCATAGTT
GCCCTGCGAGATGAAGTTCTTCTCGAACTTGGTCAAGAACTCCAGATACA
GCAGATCGTCGGGCGTCAGGGCCTCCTCACCCACCACAGCCTTCATGGCC
TGCACGTCCTTGCCGATGGCGTAGCAAGCGTACAGCTGGTTGGACACGTC
AGAGTGGTCCTTACGGGTCATGCCCTCGCCGATGGCAGACTTCATCAAAC
GCGACAGCGATGGCAGCACGTTGACTGGTGGGTAGATCTGTCTGTTGTGC
AGCTGACGATCGACGTAGATCTGGCCCTCGGTAATGTAACCGGTCAAATC
GGGAATGGGATGGGTAATATCATCGTTAGGCATGGTCAGAATGGGGATCT
GGGTGATGGATCCGTTGCGTCCCTCCACACGACCGGCACGCTCGTAGATG
GTGGCCAAATCGGTGTACATGTAACCGGGGAAACCACGACGACCGGGCAC
CTCCTCACGGGCAGCAGACACCTCACGCAGAGCCTCGGCGTACGAGGACA
TGTCGGTAAGGATGACCAGCACGTGCTTCTCGCACTGGTAGGCCAAGAAC
TCGGCGGCAGTCAAAGCCAGGCGGGGAGTGATGATACGCTCGATGGTCGG
ATCGTTGGCCAAGTTCAAGAACAGACACACGTTCTCCATGGAACCGTTCT
CCTCGAAGTCCTGCTTGAAGAATCGGGCAGTCTCCATGTTCACACCCATA
GCGGCGAACACGATGGCGAAGTTGTCGGTGTGGTCATCCAGCACGGACTT
GCCCGGCAGCTTGACGAGACCGGCCTGACGACAGATCTGGGGCGGCGATT
TCG

BO08355.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG17369-PB 1473 Vha55-RB 548..1470 941..19 4615 100 Minus
CG17369-PA 1473 Vha55-RA 548..1470 941..19 4615 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:10:37
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 652..1585 953..19 4650 99.9 Minus
Vha55-RA 2658 CG17369-RA 717..1650 953..19 4650 99.9 Minus
Vha55-RB 2722 CG17369-RB 781..1714 953..19 4650 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:10:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12624965..12625764 153..953 3955 99.9 Plus
3R 32079331 3R 12624770..12624908 19..157 695 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:10:35 has no hits.

BO08355.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:55 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-PB 537..1473 18..953 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:34 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17369-PA 537..1473 18..953 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:04:27 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 781..1714 19..953 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:15:57 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 781..1714 19..953 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:15:57 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 12624770..12624904 19..153 100 <- Plus
3R 12624966..12625764 154..953 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:04:27 Download gff for BO08355.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8450492..8450626 19..153 100 <- Plus
arm_3R 8450688..8451486 154..953 99   Plus

BO08355.5prime Sequence

948 bp (808 high quality bases) assembled on 2006-01-06

> BO08355.5prime
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCGGTTACATGTACACCGATTTT

BO08355.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17369-PB 1473 Vha55-RB 1..911 17..927 4555 100 Plus
CG17369-PA 1473 Vha55-RA 1..911 17..927 4555 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:57:29
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 116..1047 17..947 4635 99.9 Plus
Vha55-RA 2658 CG17369-RA 181..1112 17..947 4635 99.9 Plus
Vha55-RB 2722 CG17369-RB 245..1176 17..947 4635 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:57:25
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12625369..12626227 947..90 4245 99.9 Minus
3R 32079331 3R 12627449..12627521 89..17 365 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:57:27 has no hits.

BO08355.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:44:56 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-PB 1..932 17..948 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:35 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17369-PA 1..932 17..948 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:27:15 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1176 17..948 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:11:08 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1176 17..948 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:11:08 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 12625368..12626227 90..948 99 <- Minus
3R 12627449..12627521 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:27:15 Download gff for BO08355.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8451090..8451949 90..948 99 <- Minus
arm_3R 8453171..8453243 17..89 100   Minus

BO08355.complete Sequence

1504 bp (1504 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631159

> BO08355.complete
GAAGTTATCAGTCGACATGAACGCCCAACAAGCCCAGCGGGAACATGTCC
TCGCCGTCTCCCGGGACTTTATCTCCCAGCCCCGCTTGACTTACAAGACT
GTGTCTGGTGTGAACGGTCCCCTGGTCATTCTCGATGAGGTCAAGTTCCC
CAAGTTCGCCGAGATCGTGCAGCTGCGTCTGGCTGACGGTACTGTGCGCT
CCGGACAGGTGCTCGAGGTGAGCGGCTCCAAGGCCGTGGTCCAGGTGTTC
GAGGGCACCTCGGGCATCGATGCCAAGAACACGCTTTGCGAGTTCACCGG
CGACATTCTGCGCACGCCCGTGTCGGAGGATATGTTGGGCCGTGTGTTCA
ACGGTTCCGGCAAGCCCATCGACAAGGGACCCCCAATTCTGGCTGAGGAT
TTCCTGGACATCCAGGGCCAGCCCATCAACCCCTGGTCGCGTATCTACCC
CGAGGAGATGATCCAGACCGGTATCTCGGCCATCGATGTGATGAACTCGA
TTGCCCGTGGCCAGAAGATCCCCATCTTCTCCGCCGCCGGTCTGCCCCAC
AACGAAATCGCCGCCCAGATCTGTCGTCAGGCCGGTCTCGTCAAGCTGCC
GGGCAAGTCCGTGCTGGATGACCACACCGACAACTTCGCCATCGTGTTCG
CCGCTATGGGTGTGAACATGGAGACTGCCCGATTCTTCAAGCAGGACTTC
GAGGAGAACGGTTCCATGGAGAACGTGTGTCTGTTCTTGAACTTGGCCAA
CGATCCGACCATCGAGCGTATCATCACTCCCCGCCTGGCTTTGACTGCCG
CCGAGTTCTTGGCCTACCAGTGCGAGAAGCACGTGCTGGTCATCCTTACC
GACATGTCCTCGTACGCCGAGGCTCTGCGTGAGGTGTCTGCTGCCCGTGA
GGAGGTGCCCGGTCGTCGTGGTTTCCCCGGTTACATGTACACCGATTTGG
CCACCATCTACGAGCGTGCCGGTCGTGTGGAGGGACGCAACGGATCCATC
ACCCAGATCCCCATTCTGACCATGCCTAACGATGATATTACCCATCCCAT
TCCCGATTTGACCGGTTACATTACCGAGGGCCAGATCTACGTCGATCGTC
AGCTGCACAACAGACAGATCTACCCACCAGTCAACGTGCTGCCATCGCTG
TCGCGTTTGATGAAGTCTGCCATCGGCGAGGGCATGACCCGTAAGGACCA
CTCTGACGTGTCCAACCAGCTGTACGCTTGCTACGCCATCGGCAAGGACG
TGCAGGCCATGAAGGCTGTGGTGGGTGAGGAGGCCCTGACGCCCGACGAT
CTGCTGTATCTGGAGTTCTTGACCAAGTTCGAGAAGAACTTCATCTCGCA
GGGCAACTATGAGAACCGCACTGTCTTCGAATCCCTGGACATTGGCTGGC
AGCTGCTGCGTATCTTCCCCAAGGAGATGCTCAAGCGTATCCCGGCCTCC
ATCCTGGCCGAATTCTACCCTAGGGACTCGCGCCATGCAAGCTTTCTAGA
CCAT

BO08355.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 1473 CG17369-PC 1..1470 17..1486 7350 100 Plus
Vha55-RA 1473 CG17369-PA 1..1470 17..1486 7350 100 Plus
Vha55-RB 1473 CG17369-PB 1..1470 17..1486 7350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:06
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-RC 2048 CG17369-RC 116..1585 17..1486 7350 100 Plus
Vha55-RA 2658 CG17369-RA 181..1650 17..1486 7350 100 Plus
Vha55-RB 2722 CG17369-RB 245..1714 17..1486 7350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 12624965..12626227 1352..90 6315 100 Minus
3R 32079331 3R 12624770..12624908 1486..1348 695 100 Minus
3R 32079331 3R 12627449..12627521 89..17 365 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:10:05 has no hits.

BO08355.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:20 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 1..1473 17..1487 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:44 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 181..1650 17..1486 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:55 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1714 17..1488 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:20 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RA 181..1650 17..1486 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:20 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
Vha55-RB 245..1714 17..1488 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:20 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
3R 12624768..12624904 1352..1488 98 <- Minus
3R 12624966..12626227 90..1351 100 <- Minus
3R 12627449..12627521 17..89 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:55 Download gff for BO08355.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 8450490..8450626 1352..1488 98 <- Minus
arm_3R 8450688..8451949 90..1351 100 <- Minus
arm_3R 8453171..8453243 17..89 100   Minus

BO08355.pep Sequence

Translation from 16 to 1504

> BO08355.pep
MNAQQAQREHVLAVSRDFISQPRLTYKTVSGVNGPLVILDEVKFPKFAEI
VQLRLADGTVRSGQVLEVSGSKAVVQVFEGTSGIDAKNTLCEFTGDILRT
PVSEDMLGRVFNGSGKPIDKGPPILAEDFLDIQGQPINPWSRIYPEEMIQ
TGISAIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKLPGKSVL
DDHTDNFAIVFAAMGVNMETARFFKQDFEENGSMENVCLFLNLANDPTIE
RIITPRLALTAAEFLAYQCEKHVLVILTDMSSYAEALREVSAAREEVPGR
RGFPGYMYTDLATIYERAGRVEGRNGSITQIPILTMPNDDITHPIPDLTG
YITEGQIYVDRQLHNRQIYPPVNVLPSLSRLMKSAIGEGMTRKDHSDVSN
QLYACYAIGKDVQAMKAVVGEEALTPDDLLYLEFLTKFEKNFISQGNYEN
RTVFESLDIGWQLLRIFPKEMLKRIPASILAEFYPRDSRHASFLDH

BO08355.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:21
Subject Length Description Subject Range Query Range Score Percent Strand
Vha55-PC 490 CG17369-PC 1..490 1..490 2515 100 Plus
Vha55-PA 490 CG17369-PA 1..490 1..490 2515 100 Plus
Vha55-PB 490 CG17369-PB 1..490 1..490 2515 100 Plus
ATPsyn-beta-PD 505 CG11154-PD 73..443 65..445 285 26.3 Plus
ATPsyn-beta-PA 505 CG11154-PA 73..443 65..445 285 26.3 Plus