Clone Sequence Records
BO08357.3prime Sequence
876 bp (819 high quality bases) assembled on 2006-01-06
> BO08357.3prime
ATGGTCTAGAAAGCTTGCGTTGAATTCCAGAGTATTCGCCTCCGTCATCG
TCGTACGCATGCGGCTCTGGTCGCTCTGGGAACGACGAAGTCCGCCCGGA
CGCCATCCGCTCCTCCAGCGCTTAATGCATCCCAGCAAGGACCAGTTGAT
GGACTTGGAGCGACTCAGCACATAGACATACGGATCCGAGGTGAAGTGCA
GCGCCGTAAGAACATCGGCGATGATGAAGAACTTGTTCGATGCGGGCACC
CGATTTGGAGCTATAGCCAACGGGATGGCGATCATCTGTGGCATCCAGCA
GATGACGAACGAGATGCTGAGGAACGCCATTAGTTTGGCGAACTTGATCT
CGACTGGCGAGGAGTCGGTGGCCGCCATTGTGACGCTAACGCTGTGCCTG
TACTGCCTTGCCGGCTGTACACTGCGATGGCTGTTTCCGCTTCCGGTGCT
CAGCTGCGTCTGGTAGAGGGTGGTGCCGCTGCTGCTCTCGGGATCGATGC
TGATGGCACTGTTTTTGTCCCTGGAAACCAGGTCGTAGTGCATATGCCGC
TTGGCCGTGCGACTCCTTCCGATCACACAGAGCAAGGTGTGGGCCACGAA
GAGGTTGCAGGCCACGATTACAATGCACAGCAGGGTACCGAAGACCATAA
AGAGCACCGCATACGTCTTGTTCCACACGCCCGGCGCATCGCGATATCGT
ATACACTTAAGCTGGTCCGGATTGGATTCATCGATGTATGCACCAAAACC
AACGAATGGCAGGAACGTGATCACCACGGCGATCATCAGAATGCTGTTGA
TGCTCTTGCGAATGAGCTCGTAGGTAATGTGCTTGTGGTAGATAAAGGGT
CTGGCTAGGGGCATCCATCTTTCTGC
BO08357.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PA | 1320 | CG7497-RA | 460..1317 | 876..19 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 670..1527 | 876..19 | 4275 | 99.9 | Minus |
CG7497-RB | 1696 | CG7497-RB | 670..1527 | 876..19 | 4275 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17636945..17637301 | 639..283 | 1785 | 100 | Minus |
3L | 28110227 | 3L | 17637442..17637706 | 283..19 | 1325 | 100 | Minus |
3L | 28110227 | 3L | 17636691..17636888 | 833..636 | 990 | 100 | Minus |
3L | 28110227 | 3L | 17636491..17636535 | 876..832 | 210 | 97.8 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:41:15 has no hits.
BO08357.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:00 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 460..1320 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:39 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 460..1320 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 18:40:52 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 670..1527 | 19..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:49:04 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 670..1527 | 19..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:49:04 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17636491..17636535 | 832..876 | 97 | -> | Minus |
3L | 17636693..17636885 | 639..831 | 100 | -> | Minus |
3L | 17636946..17637301 | 283..638 | 100 | -> | Minus |
3L | 17637443..17637706 | 19..282 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 18:40:52 Download gff for
BO08357.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17629591..17629635 | 832..876 | 97 | -> | Minus |
arm_3L | 17629793..17629985 | 639..831 | 100 | -> | Minus |
arm_3L | 17630046..17630401 | 283..638 | 100 | -> | Minus |
arm_3L | 17630543..17630806 | 19..282 | 100 | | Minus |
BO08357.5prime Sequence
921 bp (819 high quality bases) assembled on 2006-01-06
> BO08357.5prime
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGGTTTCCAGGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAGCGGCACCACCCTCTACCAGACGCAGCT
GAGCACCGGAAGCGGGAACAG
BO08357.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PA | 1320 | CG7497-RA | 1..905 | 17..921 | 4500 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 211..1115 | 17..921 | 4510 | 99.9 | Plus |
CG7497-RB | 1696 | CG7497-RB | 211..1115 | 17..921 | 4510 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17633659..17633945 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 17636318..17636535 | 303..520 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 17636945..17637153 | 713..921 | 1030 | 99.5 | Plus |
3L | 28110227 | 3L | 17636691..17636888 | 519..716 | 990 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 18:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2733..2792 | 409..348 | 125 | 69.4 | Minus |
BO08357.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:01 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:41 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-PA | 1..905 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:29:51 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1115 | 17..921 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:06:28 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1115 | 17..921 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:06:28 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17633659..17633945 | 17..303 | 100 | -> | Plus |
3L | 17636319..17636535 | 304..520 | 100 | -> | Plus |
3L | 17636693..17636885 | 521..713 | 100 | -> | Plus |
3L | 17636946..17637153 | 714..921 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:29:51 Download gff for
BO08357.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17626759..17627045 | 17..303 | 100 | -> | Plus |
arm_3L | 17629419..17629635 | 304..520 | 100 | -> | Plus |
arm_3L | 17629793..17629985 | 521..713 | 100 | -> | Plus |
arm_3L | 17630046..17630253 | 714..921 | 99 | | Plus |
BO08357.complete Sequence
1351 bp (1351 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631160
> BO08357.complete
GAAGTTATCAGTCGACATGAAAAAGAAATATCGTTTGCGGCCAGTTAGAT
TTTCACCTGAATCACCTGCAATCGAACGCAATTATCATACCGGCAAAATG
GAAACCACAACACCTGTGCTCGACCTGTTGATGCCGCACAACTCAACTAC
TGTGGCGCCTCCGAAAGCGCTCTATGCAAATCGAAATCGCCTGATTATTG
GTGTTATTATCATGGTTCTGGGCGTTTTTGGCAATTCGCTGGCCCTTTTC
ATTTTGGCGCGCAAGAAGCTCAACAAAAACAGCAAATACACGCTCATGCT
GCGATGCCTGGCGACCAACAATCTGGTGGCTCTACTGGGCATGCTGACCA
CGACGCTGCTGAAAATGTATCTCTCAAAGGAAGTCCTGCAGTCGTTCATC
CGAGTGGATTGCGTGGGACTCGTGGTTTGGCGATTTTTCGGGCTCAGTTC
TGGATGCATTGCAGCAGTTATGGCGGCAGAAAGATGGATGGCCCTAGCCA
GACCCTTTATCTACCACAAGCACATTACCTACGAGCTCATTCGCAAGAGC
ATCAACAGCATTCTGATGATCGCCGTGGTGATCACGTTCCTGCCATTCGT
TGGTTTTGGTGCATACATCGATGAATCCAATCCGGACCAGCTTAAGTGTA
TACGATATCGCGATGCGCCGGGCGTGTGGAACAAGACGTATGCGGTGCTC
TTTATGGTCTTCGGTACCCTGCTGTGCATTGTAATCGTGGCCTGCAACCT
CTTCGTGGCCCACACCTTGCTCTGTGTGATCGGAAGGAGTCGCACGGCCA
AGCGGCATATGCACTACGACCTGGTTTCCAGGGACAAAAACAGTGCCATC
AGCATCGATCCCGAGAGCAGCAGCGGCACCACCCTCTACCAGACGCAGCT
GAGCACCGGAAGCGGAAACAGCCATCGCAGTGTACAGCCGGCAAGGCAGT
ACAGGCACAGCGTTAGCGTCACAATGGCGGCCACCGACTCCTCGCCAGTC
GAGATCAAGTTCGCCAAACTAATGGCGTTCCTCAGCATCTCGTTCGTCAT
CTGCTGGATGCCACAGATGATCGCCATCCCGTTGGCTATAGCTCCAAATC
GGGTGCCCGCATCGAACAAGTTCTTCATCATCGCCGATGTTCTTACGGCG
CTGCACTTCACCTCGGATCCGTATGTCTATGTGCTGAGTCGCTCCAAGTC
CATCAACTGGTCCTTGCTGGGATGCATTAAGCGCTGGAGGAGCGGATGGC
GTCCGGGCGGACTTCGTCGTTCCCAGAGCGACCAGAGCCGCATGCGTACG
ACGATGACGGAGGCGAATACTCTGGAATTCAACGCAAGCTTTCTAGACCA
T
BO08357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1239 | CG7497-PC | 1..1236 | 98..1333 | 6180 | 100 | Plus |
CG7497-RB | 1239 | CG7497-PB | 1..1236 | 98..1333 | 6180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-RC | 1822 | CG7497-RC | 211..1527 | 17..1333 | 6585 | 100 | Plus |
CG7497-RB | 1696 | CG7497-RB | 211..1527 | 17..1333 | 6585 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17636945..17637301 | 713..1069 | 1785 | 100 | Plus |
3L | 28110227 | 3L | 17633659..17633945 | 17..303 | 1435 | 100 | Plus |
3L | 28110227 | 3L | 17637442..17637706 | 1069..1333 | 1325 | 100 | Plus |
3L | 28110227 | 3L | 17636318..17636535 | 303..520 | 1090 | 100 | Plus |
3L | 28110227 | 3L | 17636691..17636888 | 519..716 | 990 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:29:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 2733..2792 | 409..348 | 125 | 69.4 | Minus |
BO08357.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:21 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RA | 1..1320 | 17..1336 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:47 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1527 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:14 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1527 | 17..1335 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:21 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RA | 211..1527 | 17..1333 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:09 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7497-RB | 211..1527 | 17..1335 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:09 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17636946..17637301 | 714..1069 | 100 | -> | Plus |
3L | 17637443..17637706 | 1070..1335 | 99 | | Plus |
3L | 17633659..17633945 | 17..303 | 100 | -> | Plus |
3L | 17636319..17636535 | 304..520 | 100 | -> | Plus |
3L | 17636693..17636885 | 521..713 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:14 Download gff for
BO08357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17626759..17627045 | 17..303 | 100 | -> | Plus |
arm_3L | 17629419..17629635 | 304..520 | 100 | -> | Plus |
arm_3L | 17629793..17629985 | 521..713 | 100 | -> | Plus |
arm_3L | 17630046..17630401 | 714..1069 | 100 | -> | Plus |
arm_3L | 17630543..17630806 | 1070..1335 | 99 | | Plus |
BO08357.pep Sequence
Translation from 16 to 1351
> BO08357.pep
MKKKYRLRPVRFSPESPAIERNYHTGKMETTTPVLDLLMPHNSTTVAPPK
ALYANRNRLIIGVIIMVLGVFGNSLALFILARKKLNKNSKYTLMLRCLAT
NNLVALLGMLTTTLLKMYLSKEVLQSFIRVDCVGLVVWRFFGLSSGCIAA
VMAAERWMALARPFIYHKHITYELIRKSINSILMIAVVITFLPFVGFGAY
IDESNPDQLKCIRYRDAPGVWNKTYAVLFMVFGTLLCIVIVACNLFVAHT
LLCVIGRSRTAKRHMHYDLVSRDKNSAISIDPESSSGTTLYQTQLSTGSG
NSHRSVQPARQYRHSVSVTMAATDSSPVEIKFAKLMAFLSISFVICWMPQ
MIAIPLAIAPNRVPASNKFFIIADVLTALHFTSDPYVYVLSRSKSINWSL
LGCIKRWRSGWRPGGLRRSQSDQSRMRTTMTEANTLEFNASFLDH
BO08357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7497-PC | 412 | CG7497-PC | 1..412 | 28..439 | 2114 | 100 | Plus |
CG7497-PB | 412 | CG7497-PB | 1..412 | 28..439 | 2114 | 100 | Plus |