Clone Sequence Records
BO08359.3prime Sequence
858 bp (857 high quality bases) assembled on 2006-01-06
> BO08359.3prime
ATGGTCTAGAAAGCTTGCAAACGCTTCCTCGCCCACAACATCACTGATGG
TGGCCACCAGGCGACGTGCATGCTCCACGGCGCATGTGGCGGTTACCAGT
CCCAGATGAATGCAATACAACTCGTAGACGCGCACTTTGGCCGGTGACAG
CTTGGGGAAGCACAACTCCGCCAGATCGTGGTAATAGTCCATTGTAAGAG
CACCTGGTTCTGTTGGGGATTTCGAACCGTTGCCACTGGCTGCTCCTGTG
GACAGAAAGTGGTGCTGCAAATCCACGACGGTACTAAGAACGCCACCAGA
CATGTCCTCGAACCAGAGGAAGTACGAGTAATGGAATGCCTTATCCTTCC
ACATCACTGTGGTCTGGCCCTTCTTAAGGTAATTTCTCGCGATCTCCACC
ATGCTCCAGAGTTTTGTCTTTGGCACCAGCTGGTTCGGTCGCAGATCCGG
AGCAAGCATTTGTCCTCGGCTGCGATTGACGTACATAAAGTGCACCAGAC
CCGGAAAATCCTCCAAATAAGCATCAATGGATATGTTACGAGTGGCCTTA
ACGGCCAGAAATTCAGCGAACTCCAGTAGCTTGGCTTCCACATTCGCTGC
CGTATCAGAGAGTTGATCCAGCTCATGGACACTTGAGCTGTCGCAGCAGG
CCAGTGTGAATATCTGCTTCAGTTCCTCTCCGAACGAGGGCAAATTCGAC
TCAATCCTCACGAGCAGCTCCCGCTCAAAGTTCTTGAAGTACTCAGTGTA
CATCTTGCGAAGATTCTCCCATTTAGCGGCGAACTTCTTCGTGCAGTTCT
CTAGGTCATCGGTTTCCGATCGCTGTTTCAGATATCGCTTCAAAGCGGTC
AAGGCCTG
BO08359.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12855-PA | 1791 | CG12855-RA | 949..1788 | 858..19 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 14:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 1032..1871 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 14:27:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14856460..14857299 | 858..19 | 4200 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 14:27:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1169..1205 | 374..410 | 113 | 78.4 | Plus |
BO08359.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:04 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 949..1791 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:46 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 949..1791 | 15..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:03:19 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 1032..1875 | 14..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:34:44 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 1032..1875 | 14..858 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:34:44 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14856460..14857303 | 14..858 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:03:19 Download gff for
BO08359.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743965..10744808 | 14..858 | 99 | | Minus |
BO08359.5prime Sequence
939 bp (881 high quality bases) assembled on 2006-01-06
> BO08359.5prime
GAAGTTATCAGTCGACATGAACGGACTGATTGTGTTTAACAGCGCCAACG
ATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCGGAGT
GTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACAGCAA
CATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATAATGC
AGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGGCTTC
AATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCGGACA
AATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACGCTGA
CGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGCCATG
CAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGTTGTG
GGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTGATCA
ACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCTTGAG
CACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCGTTTC
CAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTTGCTG
CCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGCGCCA
AAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCTCCTA
TGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGTCTCC
ATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCCACTG
ACCAGCTGCATCTACGATTCCTTCTTTGTGCTTTCAAAAATCGTGGCTGT
TCAGCATCAGGGCGATTCGGATGCCCTGAAGCCCCGCCT
BO08359.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12855-PA | 1791 | CG12855-RA | 1..918 | 17..934 | 4540 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 84..1001 | 17..934 | 4560 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14855512..14856429 | 17..934 | 4560 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:32:19 has no hits.
BO08359.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:05 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 1..922 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:47 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12855-PA | 1..922 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:29:50 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 79..1005 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:05:51 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 79..1005 | 10..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:05:51 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14855507..14856433 | 10..939 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:29:50 Download gff for
BO08359.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743012..10743938 | 10..939 | 99 | | Plus |
BO08359.complete Sequence
1822 bp (1822 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631161
> BO08359.complete
GAAGTTATCAGTCGACATGAACGGACTGATTGTGTTTAACAGCGCCAACG
ATGTTGTATACCAGAAGCTTAACGAGCCGCTGGCGCAGAAGATCCGGAGT
GTGGCCACCACCCAGGGCCTGCTCCAGTCCGGCGGCTCCCTGGACAGCAA
CATACTGCTGCAGATTTTCAGCCCCATCGTTGGATCTCAGCGAATAATGC
AGTGCCAGTTCGATAATGCCTACTCCAGCCTGCAGTGTGAGCAAGGCTTC
AATTTGGTGTTCGGCGAACTTCTTGGCTTCACCTTTCTGAAGATCGGACA
AATACCCGTGGAGCTGCTGGGTCGCCAAATGGGTGTGGCCATTACGCTGA
CGCGCTATTGTTACGGCGCCAATTTGTTTGCCGCCCAGGCGGGGGCCATG
CAACAGGAGTTGCTGACGCAGTGCCTCGACTGCTATGAGACTTTGTTGTG
GGAGGAGGATCAGACGTACCTGCTGGAGGCCATGCCCAGGCTGCTGATCA
ACACGGAACTAAAGAGGACAGTGCATCTGACGCTGGACGCCACGCTTGAG
CACTTGCGCCAGCTCGGACTGCCCCGAGCCCACGCCCTGTTGCTCGTTTC
CAACAAGCTGGTGGCCGCGAACAGCACTCGGCAAGCTCTGCCGCTTGCTG
CCGCCGACCTACTCTTCCTCAGCCTCATGTCACGCGCCCTGCAAGCGCCA
AAGTCCCCTTCCCAGCGAGCAGTAGCTGTATTCCTGCAGGGTGTCTCCTA
TGATGTGAACTCTGGCTGCGTTCCCAGTATCGTGCACATCTCGCGTCTCC
ATGGTAACCAAGTTCTCCTGCAGGTCATCGAGTACGCCCACATGCCACTG
ACCAGCTGCATCTACGATTCCTTCTTTGTGCTTCAAAAAATCGTGGCTGT
TCAGCATCAGGGCGATTCGGATGCCCTGAAGCCCGCCTTCGAGAACCTCG
AATCGTTTATTGTGCAGGCCTTGACCGCTTTGAAGCGATATCTGAAACAG
CGATCGGAAACCGATGACCTAGAGAACTGCACGAAGAAGTTCGCCGCTAA
ATGGGAGAATCTTCGCAAGATGTACACTGAGTACTTCAAGAACTTTGAGC
GGGAGCTGCTCGTGAGGATTGAGTCGAATTTGCCCTCGTTCGGAGAGGAA
CTGAAGCAGATATTCACACTGGCCTGCTGCGACAGCTCAAGTGTCCATGA
GCTGGATCAACTCTCTGATACGGCAGCGAATGTGGAAGCCAAGCTACTGG
AGTTCGCTGAATTTCTGGCCGTTAAGGCCACTCGTAACATATCCATTGAT
GCTTATTTGGAGGATTTTCCGGGTCTGGTGCACTTTATGTACGTCAATCG
CAGCCGAGGACAAATGCTTGCTCCGGATCTGCGACCGAACCAGCTGGTGC
CAAAGACAAAACTCTGGAGCATGGTGGAGATCGCGAGAAATTACCTTAAG
AAGGGCCAGACCACAGTGATGTGGAAGGATAAGGCATTCCATTACTCGTA
CTTCCTCTGGTTCGAGGACATGTCTGGTGGCGTTCTTAGTACCGTCGTGG
ATTTGCAGCACCACTTTCTGTCCACAGGAGCAGCCAGTGGCAACGGTTCG
AAATCCCCAACAGAACCAGGTGCTCTTACAATGGACTATTACCACGATCT
GGCGGAGTTGTGCTTCCCCAAGCTGTCACCGGCCAAAGTGCGCGTCTACG
AGTTGTATTGCATTCATCTGGGACTGGTAACCGCCACATGCGCCGTGGAG
CATGCACGTCGCCTGGTGGCCACCATCAGTGATGTTGTGGGCGAGGAAGC
GTTTGCAAGCTTTCTAGACCAT
BO08359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 1791 | CG12855-PA | 1..1788 | 17..1804 | 8940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-RA | 2074 | CG12855-RA | 84..1871 | 17..1804 | 8940 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14855512..14857299 | 17..1804 | 8940 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:50:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Porto1 | 4682 | Porto1 DOC5 4682bp | 1169..1205 | 1449..1413 | 113 | 78.4 | Minus |
BO08359.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:43 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 1..1791 | 17..1808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:03 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 66..1862 | 10..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:25 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 84..1871 | 17..1806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:43 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS-RA | 66..1862 | 10..1809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:26 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HPS1-RA | 84..1871 | 17..1806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:26 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14855512..14857299 | 17..1806 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:25 Download gff for
BO08359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10743017..10744804 | 17..1806 | 99 | | Plus |
BO08359.pep Sequence
Translation from 16 to 1822
> BO08359.pep
MNGLIVFNSANDVVYQKLNEPLAQKIRSVATTQGLLQSGGSLDSNILLQI
FSPIVGSQRIMQCQFDNAYSSLQCEQGFNLVFGELLGFTFLKIGQIPVEL
LGRQMGVAITLTRYCYGANLFAAQAGAMQQELLTQCLDCYETLLWEEDQT
YLLEAMPRLLINTELKRTVHLTLDATLEHLRQLGLPRAHALLLVSNKLVA
ANSTRQALPLAAADLLFLSLMSRALQAPKSPSQRAVAVFLQGVSYDVNSG
CVPSIVHISRLHGNQVLLQVIEYAHMPLTSCIYDSFFVLQKIVAVQHQGD
SDALKPAFENLESFIVQALTALKRYLKQRSETDDLENCTKKFAAKWENLR
KMYTEYFKNFERELLVRIESNLPSFGEELKQIFTLACCDSSSVHELDQLS
DTAANVEAKLLEFAEFLAVKATRNISIDAYLEDFPGLVHFMYVNRSRGQM
LAPDLRPNQLVPKTKLWSMVEIARNYLKKGQTTVMWKDKAFHYSYFLWFE
DMSGGVLSTVVDLQHHFLSTGAASGNGSKSPTEPGALTMDYYHDLAELCF
PKLSPAKVRVYELYCIHLGLVTATCAVEHARRLVATISDVVGEEAFASFL
DH
BO08359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HPS1-PA | 596 | CG12855-PA | 1..596 | 1..596 | 3051 | 100 | Plus |
