Clone Sequence Records
BO08362.3prime Sequence
989 bp (819 high quality bases) assembled on 2006-01-06
> BO08362.3prime
ATGGTCTAGAAAGCTTGCATTGATCAGGTGCAGCAGCACGTGATTGGCAC
TCGTCGTTACCTGTCGCTTTCGCAGATCCTGCTGACGACTTCCGTAGCGG
CACCAGTACACAAAATGCTTATTATTGTTCCACAGACTCTGTTTGGCTTT
GCGCGCCACCGACACCTGATTGCGAATATCCTTCTCGTTGTGCGGCACCT
TTTCCTTGTCGGCAAAGTTATTGATACGCAGCTCCCATCCGTGACTCCAA
ATATCCGCCAATTGCATCTTGATCAACTTGTATGTACCATTCTCACGGAT
TTTCACCGAATATATCTCAATGGTCTCCGGCTTGGGTTTATTGTCTTTGG
CCACCTTGCAGAGCACGATTCCATACCAAGAGGCGACAGGCGTCTCATTC
TCGTCCTGCGTCTCCAGGAAACTGCTACCGTTGCGCGGGATGACCAGCCG
CTGGGATTGGTTTTGGATTTGGCTGTGACTATGGCTGTGATTGCGATGCG
GCGGCGATGGGTGGTTGGTCAGTGGGCAGTCGAGCTCCTCCAGAGCGTCC
ACGTCGAGGTCGTTGTCACCGGTGTCGGCTGCTGCGGCCGCTGCTGCTGC
GTTAGCTGCGGCCGCCTCGGCTGCGGCGCTGCTGCGGATCTCGACCACGA
AACCGCACTCGACGACGGCGCAAAAGATGCGCTGCTCCTCGGGCTTGAAC
CACTTGGATTCGCGCAGCTTTTGCACTGCCACACTGCTGCCGAATGTGGC
GCCCACGGTGCCGCCAGCAATTCCATTCTTTTGCCCGCTGGGCGGCAGTA
GGCGGTGGGCGGTGCCGGTTGTGGGATTCTGATGCTGCTGCAGTGGCGGT
GGCCAATTGGAGGTGGGCGAGCTGGGCGCCGATTGGGAGTAACCGCTGGC
AGGTGGCGCCCACCGGTTGGTTGTTGTGACCCTGCAGTGGCCACCATTTC
AGCGAGCTGACAAAAGCTGTCGACCGGTTCATGTCGACT
BO08362.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32597-PA | 966 | l(1)G0469-RA | 72..963 | 910..19 | 4460 | 100 | Minus |
CG32597-PA | 966 | l(1)G0469-RA | 19..73 | 964..910 | 275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:27:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 388..1350 | 982..19 | 4735 | 99.6 | Minus |
l(1)G0469-RA | 1761 | CG32597-RA | 388..1350 | 982..19 | 4735 | 99.6 | Minus |
l(1)G0469-RC | 2729 | CG32597-RC | 388..1308 | 982..61 | 4525 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:27:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14211052 | 345..964 | 3050 | 99.8 | Plus |
X | 23542271 | X | 14206594..14206777 | 163..346 | 920 | 100 | Plus |
X | 23542271 | X | 14206320..14206468 | 19..167 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:27:09 has no hits.
BO08362.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:09 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..966 | 16..982 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:53 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..966 | 16..982 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:12:18 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1350 | 19..982 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:11 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1350 | 19..982 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:11 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206320..14206466 | 19..165 | 100 | <- | Plus |
X | 14206597..14206775 | 166..344 | 100 | <- | Plus |
X | 14210434..14211070 | 345..982 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:12:18 Download gff for
BO08362.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100353..14100499 | 19..165 | 100 | <- | Plus |
arm_X | 14100630..14100808 | 166..344 | 100 | <- | Plus |
arm_X | 14104467..14105103 | 345..982 | 99 | | Plus |
BO08362.5prime Sequence
925 bp (791 high quality bases) assembled on 2006-01-06
> BO08362.5prime
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCANGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTG
BO08362.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32597-PA | 966 | l(1)G0469-RA | 1..909 | 17..925 | 4526 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:46:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 388..1296 | 17..925 | 4534 | 99.9 | Plus |
l(1)G0469-RC | 2729 | CG32597-RC | 388..1296 | 17..925 | 4534 | 99.9 | Plus |
l(1)G0469-RA | 1761 | CG32597-RA | 388..1296 | 17..925 | 4534 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14211070 | 653..17 | 3185 | 100 | Minus |
X | 23542271 | X | 14206594..14206777 | 835..652 | 909 | 99.5 | Minus |
X | 23542271 | X | 14206374..14206466 | 925..833 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 00:46:18 has no hits.
BO08362.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:10 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:55 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32597-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:28:12 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1296 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:53 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1296 | 17..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:53 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206374..14206466 | 833..925 | 100 | <- | Minus |
X | 14206597..14206775 | 654..832 | 99 | <- | Minus |
X | 14210434..14211070 | 17..653 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:28:12 Download gff for
BO08362.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100407..14100499 | 833..925 | 100 | <- | Minus |
arm_X | 14100630..14100808 | 654..832 | 99 | <- | Minus |
arm_X | 14104467..14105103 | 17..653 | 100 | | Minus |
BO08362.complete Sequence
997 bp (997 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631162
> BO08362.complete
GAAGTTATCAGTCGACATGAACCGTTCGAACAGCTTTGTCAGCTCGCTGA
AATGGTGGCCACTGCAGGGTCACAACAACCAACCGGTGGCGCCACCTGCC
AGCGGTTACTCCCAATCGGCGCCCAGCTCGCCCACCTCCAATTGGCCACC
GCCACTGCAGCAGCATCAGAATCCCACAACCGGCACCGCCCACCGCCTAC
TGCCGCCCAGCGGGCAAAAGAATGGAATTGCTGGCGGCACCGTGGGCGCC
ACATTCGGCAGCAGTGTGGCAGTGCAAAAGCTGCGCGAATCCAAGTGGTT
CAAGCCCGAGGAGCAGCGCATCTTTTGCGCCGTCGTCGAGTGCGGTTTCG
TGGTCGAGATCCGCAGCAGCGCCGCAGCCGAGGCGGCCGCAGCTAACGCA
GCAGCAGCGGCCGCAGCAGCCGACACCGGTGACAACGACCTCGACGTGGA
CGCTCTGGAGGAGCTCGACTGCCCACTGACCAACCACCCATCGCCGCCGC
ATCGCAATCACAGCCATAGTCACAGCCAAATCCAAAACCAATCCCAGCGG
CTGGTCATCCCGCGCAACGGTAGCAGTTTCCTGGAGACGCAGGACGAGAA
TGAGACGCCTGTCGCCTCTTGGTATGGAATCGTGCTCTGCAAGGTGGCCA
AAGACAATAAACCCAAGCCGGAGACCATTGAGATATATTCGGTGAAAATC
CGTGAGAATGGTACATACAAGTTGATCAAGATGCAATTGGCGGATATTTG
GAGTCACGGATGGGAGCTGCGTATCAATAACTTTGCCGACAAGGAAAAGG
TGCCGCACAACGAGAAGGATATTCGCAATCAGGTGTCGGTGGCGCGCAAA
GCCAAACAGAGTCTGTGGAACAATAATAAGCATTTTGTGTACTGGTGCCG
CTACGGAAGTCGTCAGCAGGATCTGCGAAAGCGACAGGTAACGACGAGTG
CCAATCACGTGCTGCTGCACCTGATCAATGCAAGCTTTCTAGACCAT
BO08362.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:43:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 966 | CG32597-PD | 1..963 | 17..979 | 4815 | 100 | Plus |
l(1)G0469-RA | 966 | CG32597-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
l(1)G0469-RC | 1017 | CG32597-PC | 1..921 | 17..937 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:43:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-RD | 3709 | CG32597-RD | 388..1350 | 17..979 | 4815 | 100 | Plus |
l(1)G0469-RA | 1761 | CG32597-RA | 388..1350 | 17..979 | 4815 | 100 | Plus |
l(1)G0469-RC | 2729 | CG32597-RC | 388..1308 | 17..937 | 4605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:43:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 14210434..14211070 | 653..17 | 3185 | 100 | Minus |
X | 23542271 | X | 14206594..14206777 | 835..652 | 920 | 100 | Minus |
X | 23542271 | X | 14206320..14206468 | 979..831 | 745 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:43:14 has no hits.
BO08362.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:22 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 1..966 | 17..982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:50 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 386..1348 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:33:33 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1350 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:23 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 386..1348 | 17..979 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:15 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
l(1)G0469-RA | 388..1350 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:15 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 14206317..14206466 | 833..981 | 98 | <- | Minus |
X | 14206597..14206775 | 654..832 | 100 | <- | Minus |
X | 14210434..14211070 | 17..653 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:33:33 Download gff for
BO08362.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 14100350..14100499 | 833..981 | 98 | <- | Minus |
arm_X | 14100630..14100808 | 654..832 | 100 | <- | Minus |
arm_X | 14104467..14105103 | 17..653 | 100 | | Minus |
BO08362.pep Sequence
Translation from 16 to 997
> BO08362.pep
MNRSNSFVSSLKWWPLQGHNNQPVAPPASGYSQSAPSSPTSNWPPPLQQH
QNPTTGTAHRLLPPSGQKNGIAGGTVGATFGSSVAVQKLRESKWFKPEEQ
RIFCAVVECGFVVEIRSSAAAEAAAANAAAAAAAADTGDNDLDVDALEEL
DCPLTNHPSPPHRNHSHSHSQIQNQSQRLVIPRNGSSFLETQDENETPVA
SWYGIVLCKVAKDNKPKPETIEIYSVKIRENGTYKLIKMQLADIWSHGWE
LRINNFADKEKVPHNEKDIRNQVSVARKAKQSLWNNNKHFVYWCRYGSRQ
QDLRKRQVTTSANHVLLHLINASFLDH
BO08362.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
l(1)G0469-PD | 321 | CG32597-PD | 1..321 | 1..321 | 1718 | 100 | Plus |
l(1)G0469-PA | 321 | CG32597-PA | 1..321 | 1..321 | 1718 | 100 | Plus |
l(1)G0469-PC | 338 | CG32597-PC | 1..309 | 1..309 | 1650 | 99.4 | Plus |