Clone Sequence Records
BO08363.3prime Sequence
981 bp (784 high quality bases) assembled on 2006-01-06
> BO08363.3prime
ATGGTCTAGAAAGCTTGCATCGCTGTTGCTTATCAGCGACTCCTGTTGTT
CGTCATCGTTGACCCTAACAATGCTTGGCTTATGGCACCGGCAGACTTTT
CTATACACAATCCTAAAGAGCTTCATCAGTGGGTCGGAATCGTCGTTACG
CATCAATAGCGAAACGAACACCAGGGCCACAAAGATGGGTATCGAGCCCA
TGTAGAACATCGGCGAATACGGTTTGTTCTTCAGCAGGACATCGAACAGG
ATGGCTAGCGGAATCTGTAGCGACATTGCCAGCGTGCCAATCAGTGAGGA
TGTCAAAAAGCAGCCCCACAGCCAAAGAGCCTCCGACAGCACAGTGCCAA
CTAAGCCGTTCAAAAATAGAAGGGCAAACTGCCCTTGACTGGGCAGCTCA
AAGGTTTCTATTTTGGTGAAGTGGAGGATAAAGAATATTGGCCATAAAAG
CAACATATTCCATAGGCCAACAAAACCGAAAAACAATGGTATATCGACCT
TCTCCTCCGTATCGCTTTTTCGCTTCACGAAAACCAAATAGGCGGCATAG
AAGAAAGCGCTGAAAAGGGCTAAAAGGACGCCTCTGGTCATCTTGGTATC
GTGTAGGTCGTTCATGGTGATGGCCACCACTCCGCCAATGTTCATGGCCA
CCGCAATCACCTTGGTGATAGTCAGCTTGTCACCTGTTGCCGAGGGAAAT
ACGGCTGCCAGGCAGATAATGAAGAATGACGATGTTGAGCTAACCAGTGT
TATCATGGCCGCCTCGTCCATTTCCAGGGCCAGCTGAAAGAAGTAATTGG
CCGCAAACCAGAGCAGACAAAAGAGTAGCGCAGTCTTTGCCGTTTTGTGG
TGTGTCTTTTGGCGCCTAATTCTCAAGCTGGCGGCATACAAAAGCCTGGC
CATTAAAGCATCGGTGGCTTCGTGGGCAGACATCTCTCTGACTTCGGCCA
TCTTGCTGAAGCGCACACTTCTTAACACTGA
BO08363.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 1350 | CG8195-RA | 392..1347 | 974..19 | 4730 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 855..1810 | 974..19 | 4750 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:31:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563741..15564240 | 475..974 | 2470 | 99.6 | Plus |
2R | 25286936 | 2R | 15563270..15563689 | 64..483 | 2085 | 99.8 | Plus |
2R | 25286936 | 2R | 15563167..15563215 | 19..67 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:31:20 has no hits.
BO08363.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:11 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 386..1350 | 15..980 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:56 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 386..1350 | 15..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:40 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 849..1813 | 15..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:57 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 849..1813 | 15..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:57 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15563163..15563212 | 15..64 | 96 | <- | Plus |
2R | 15563271..15563682 | 65..476 | 100 | <- | Plus |
2R | 15563743..15564244 | 477..980 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:40 Download gff for
BO08363.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11450668..11450717 | 15..64 | 96 | <- | Plus |
arm_2R | 11450776..11451187 | 65..476 | 100 | <- | Plus |
arm_2R | 11451248..11451749 | 477..980 | 99 | | Plus |
BO08363.5prime Sequence
873 bp (823 high quality bases) assembled on 2006-01-06
> BO08363.5prime
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATAC
BO08363.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 1350 | CG8195-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:16:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 463..1320 | 16..873 | 4290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:16:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563775..15564347 | 873..301 | 2865 | 100 | Minus |
2R | 25286936 | 2R | 15564521..15564663 | 247..105 | 715 | 100 | Minus |
2R | 25286936 | 2R | 15564722..15564812 | 106..16 | 455 | 100 | Minus |
2R | 25286936 | 2R | 15564410..15564464 | 302..248 | 275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:16:41 has no hits.
BO08363.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:12 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:38:58 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-PA | 1..857 | 17..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:48:52 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 463..1320 | 16..873 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:35:23 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 463..1320 | 16..873 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:35:23 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15564521..15564661 | 107..247 | 100 | <- | Minus |
2R | 15564722..15564816 | 11..106 | 95 | <- | Minus |
2R | 15563775..15564346 | 302..873 | 100 | <- | Minus |
2R | 15564411..15564464 | 248..301 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:48:52 Download gff for
BO08363.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11452026..11452166 | 107..247 | 100 | <- | Minus |
arm_2R | 11452227..11452321 | 11..106 | 95 | <- | Minus |
arm_2R | 11451280..11451851 | 302..873 | 100 | <- | Minus |
arm_2R | 11451916..11451969 | 248..301 | 100 | <- | Minus |
BO08363.complete Sequence
1381 bp (1381 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631163
> BO08363.complete
GAAGTTATCAGTCGACATGCTAGGTCGCACACAACGTCTCCTGTTGGGCA
TATCAATACTGGTACTAGTCGATGTGGTTTGGGTCTCATCCAGTGAGCTG
ACAAAGTTCCTGTACAATGAGGCCAATTTTGACAAGCCCTTCTTCTGCAC
ATACTTCAAAACCTCCATGTTCAGCATTTACCTGCTAGTCATCGGTATCC
TGGCTCCCTGGAAAGAGTCATGCGAGCGACAGAATGGAAACTATGCTATG
ATGGAGCAGAATGCAGATGACGAGAATTATTACTCCAATCAGGCTGTTTT
GGGAGACCCAACCTATGTGCCCATCAGATCGCCTCACTTAGGAGCCGGAG
GACAATCCAATGGCACCTCAAACTCCATATCGGGCACCGAAAGCGATGAT
TCAAGTGTAAGAAGTGTGCGCTTCAGCAAGATGGCCGAAGTCAGAGAGAT
GTCTGCCCACGAAGCCACCGATGCCTTAATGGCCAGGCTTTCGTATGCCG
CCAGCTTGAGAATTAGGCGCCAAAAGACACACCACAAAACGGCAAAGACT
GCGCTACTCTTTTGTCTGCTCTGGTTTGCGGCCAATTACTTCTTTCAGCT
GGCCCTGGAAATGGACGAGGCGGCCATGATAACACTGGTTAGCTCAACAT
CGTCATTCTTCATTATCTGCCTGGCAGCCGTATTTCCCTCGGCAACAGGT
GACAAGCTGACTATCACCAAGGTGATTGCGGTGGCCATGAACATTGGCGG
AGTGGTGGCCATCACCATGAACGACCTACACGATACCAAGATGACCAGAG
GCGTCCTTTTAGCCCTTTTCAGCGCTTTCTTCTATGCCGCCTATTTGGTT
TTCGTGAAGCGAAAAAGCGATACGGAGGAGAAGGTCGATATACCATTGTT
TTTCGGTTTTGTTGGCCTATGGAATATGTTGCTTTTATGGCCAATATTCT
TTATCCTCCACTTCACCAAAATAGAAACCTTTGAGCTGCCCAGTCAAGGG
CAGTTTGCCCTTCTATTTTTGAACGGCTTAGTTGGCACTGTGCTGTCGGA
GGCTCTTTGGCTGTGGGGCTGCTTTTTGACATCCTCACTGATTGGCACGC
TGGCAATGTCGCTACAGATTCCGCTAGCCATCCTGTTCGATGTCCTGCTG
AAGAACAAACCGTATTCGCCGATGTTCTACATGGGCTCGATACCCATCTT
TGTGGCCCTGGTGTTCGTTTCGCTATTGATGCGTAACGACGATTCCGACC
CACTGATGAAGCTCTTTAGGATTGTGTATAGAAAAGTCTGCCGGTGCCAT
AAGCCAAGCATTGTTAGGGTCAACGATGACGAACAACAGGAGTCGCTGAT
AAGCAACAGCGATGCAAGCTTTCTAGACCAT
BO08363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:39:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 1350 | CG8195-PA | 1..1347 | 17..1363 | 6735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-RA | 2280 | CG8195-RA | 463..1810 | 16..1363 | 6740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:39:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15563741..15564347 | 907..301 | 3035 | 100 | Minus |
2R | 25286936 | 2R | 15563270..15563689 | 1318..899 | 2085 | 99.8 | Minus |
2R | 25286936 | 2R | 15564521..15564663 | 247..105 | 715 | 100 | Minus |
2R | 25286936 | 2R | 15564722..15564812 | 106..16 | 455 | 100 | Minus |
2R | 25286936 | 2R | 15564410..15564464 | 302..248 | 275 | 100 | Minus |
2R | 25286936 | 2R | 15563167..15563215 | 1363..1315 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:39:33 has no hits.
BO08363.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:24 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 1..1350 | 17..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:52 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 448..1798 | 16..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:40:39 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 464..1810 | 17..1365 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:25 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 448..1798 | 16..1367 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:27:34 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8195-RA | 464..1810 | 17..1365 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:27:34 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15564411..15564464 | 248..301 | 100 | <- | Minus |
2R | 15564521..15564661 | 107..247 | 100 | <- | Minus |
2R | 15564722..15564811 | 17..106 | 100 | | Minus |
2R | 15563165..15563212 | 1318..1365 | 95 | <- | Minus |
2R | 15563271..15563682 | 906..1317 | 100 | <- | Minus |
2R | 15563743..15564346 | 302..905 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:40:39 Download gff for
BO08363.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11450670..11450717 | 1318..1365 | 95 | <- | Minus |
arm_2R | 11450776..11451187 | 906..1317 | 100 | <- | Minus |
arm_2R | 11451248..11451851 | 302..905 | 100 | <- | Minus |
arm_2R | 11451916..11451969 | 248..301 | 100 | <- | Minus |
arm_2R | 11452026..11452166 | 107..247 | 100 | <- | Minus |
arm_2R | 11452227..11452316 | 17..106 | 100 | | Minus |
BO08363.pep Sequence
Translation from 16 to 1381
> BO08363.pep
MLGRTQRLLLGISILVLVDVVWVSSSELTKFLYNEANFDKPFFCTYFKTS
MFSIYLLVIGILAPWKESCERQNGNYAMMEQNADDENYYSNQAVLGDPTY
VPIRSPHLGAGGQSNGTSNSISGTESDDSSVRSVRFSKMAEVREMSAHEA
TDALMARLSYAASLRIRRQKTHHKTAKTALLFCLLWFAANYFFQLALEMD
EAAMITLVSSTSSFFIICLAAVFPSATGDKLTITKVIAVAMNIGGVVAIT
MNDLHDTKMTRGVLLALFSAFFYAAYLVFVKRKSDTEEKVDIPLFFGFVG
LWNMLLLWPIFFILHFTKIETFELPSQGQFALLFLNGLVGTVLSEALWLW
GCFLTSSLIGTLAMSLQIPLAILFDVLLKNKPYSPMFYMGSIPIFVALVF
VSLLMRNDDSDPLMKLFRIVYRKVCRCHKPSIVRVNDDEQQESLISNSDA
SFLDH
BO08363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8195-PA | 449 | CG8195-PA | 1..449 | 1..449 | 2295 | 100 | Plus |
CG42322-PJ | 733 | CG42322-PJ | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PI | 733 | CG42322-PI | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PN | 743 | CG42322-PN | 305..555 | 180..432 | 164 | 23.4 | Plus |
CG42322-PD | 578 | CG31203-PE | 305..522 | 180..401 | 157 | 23.3 | Plus |