Clone Sequence Records
BO08366.3prime Sequence
955 bp (841 high quality bases) assembled on 2006-01-06
> BO08366.3prime
ATGGTCTAGAAAGCTTGCCTGCAACATGCGAACCAGTGTGTCGCGCATCC
AGAGCACAATGGTGGGTGGTTGTTTCATCTCAGTCGGAATAGCATATCGT
CTCGAGCTCAAGAAAATTGCCCGTCCCTCGCAATCCGTATACCTCGTTTT
GCGGTGCGTGTGAAAGCCCAGGCTGGGTCCACAAGTGGCTGCCTTCTTAA
TCTTCGGCTTATGAGCACAGGTCTTGGTTTTGGATGCACAGCTCTTGGTC
TTTGGCTTGGTGGATCTGTGAAAGAAGCCAATGCCACCACCTTTGGTTCT
GGAACGGGCTCGATCCCGTGAATGACAGCAGGAACCACTGAGGTTGGTCA
CCTGCGATATGGCAAACGCAACGAGCAGCAGCCCGAACACAATGGCCACC
GCCACCTGAATGTTGCGATCGGCGTTCTTCAGGTCCACCAGCAACTGGAC
AACATGGTAGCCCAGAGTAATCCAAAATGTTATCGTGCAGATGGCAAAAA
AAACTAAAACACCGAGGACCTCCAATAGGAAGGTAATGAAGAAGTTAAGC
TGCTCACTTCCGAAATCTGTTCCAAAAGTTCCCCGCTGCCCGGCGCCAAC
TTGCTTATAGCCGCCACCTTGAGCTCCTCGTAGGGCGCTCTGTACAGGTG
GGCCTCCTGATCCCGTTGTCAATATTAATGGACCAGTTCCCATGGTTCCC
GGACCTAGAAAGCTTCCGGGATCAACGCCATGGGCCTGACCGCATCCAAA
ATCACAGCCAGTTCCATAGCCACAGTCCTCATCGCATGCAACGCCCAGAC
TGCATCGGTTCTGGCCCAAATTAGCGGCGCCCAGACTGATGGCGAAATCC
AGGGTGTCTCTGCCGGCAGGTCCAGCGGCAACTTGTTGTTGTCGCGCCGC
CAAACATGGTGGCAGGCTCCCACGCTCCTCTCACTCTCACCCCTGNTGCC
ATTAT
BO08366.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 1554 | CG4955-RA | 669..1551 | 901..19 | 4365 | 99.7 | Minus |
| CG4955-PA | 1554 | CG4955-RA | 614..664 | 955..905 | 236 | 98 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 12:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 751..1688 | 955..19 | 4609 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 12:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17082723..17083206 | 502..19 | 2420 | 100 | Minus |
| X | 23542271 | X | 17082197..17082650 | 955..503 | 2164 | 98.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 12:25:02 has no hits.
BO08366.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:17 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 614..1554 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:05 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 614..1554 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:49:45 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 692..1632 | 15..955 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:41:08 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 751..1691 | 15..955 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:41:08 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17082197..17082650 | 503..955 | 98 | -> | Minus |
| X | 17082723..17083209 | 15..502 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:49:45 Download gff for
BO08366.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16976230..16976683 | 503..955 | 98 | -> | Minus |
| arm_X | 16976756..16977242 | 15..502 | 99 | | Minus |
BO08366.5prime Sequence
892 bp (848 high quality bases) assembled on 2006-01-06
> BO08366.5prime
GAAGTTATCAGTCGACATGGAGAGGCGAAGACCCCGAAAGTCCTCGCGTA
AATACGTGTGCTCCAAATCAAACTCTTCAGTTGGAGGAGGAGTAGAGGAA
GACAGTGGCTCATCATTGCCTGCCACCGCCAAAGCGTTACTCCTCCAGCC
GGACGGTAATAAAGCACCAACCATGACATCCCTTCTGGGCGAACGACTCA
GAAGAGTTTCTCGCATCGCAAGAGCTCCGCACAGCCTACAAGTTACCGAA
AATCCAGAAGAAGGTGGAGCACCAATCGTACCACTAAGAGAATCCGGCGC
ATCGGAAGTGTCAGAAGTAAATCCGGGGGTTATGGTCATTCCGGAGTCGG
CCAGTCCCCGGGGATCGGCGGTGCATGGACAACACGCTAGCTTGGTCTTC
AGTGCTGAAGCCAGGGATTCGGACAGTACGCGGATATCGGAGGAAATGGT
GGAAGTGTTCCAAACCTCTTCGGCGAGAACCACATCCAATGAGCCCGCAG
GGGGCAATCTGCGCTTTGAAACCACTCCCGTGGCTGTAAGCGAAAGTATG
GTTGGCAATATAAACTTCTCCCCGAACGCCATCTACGATCAGAACAGGTA
TAGCAGCATGATGTCCAACGGGGATTACAATAATGGCAACAGGGGTGAGA
GTGAGAGGAGCGTGGGAGCCTGCCACCATGGTTGGGCGGCGCGACAACAA
CAAGTTGCCGCTGGACCTGCCGGCAGAGACACCCTGNGATTCGCCATCAG
TCTGGGCGCCGCTAATTTGGGCCAGAACCGATGCAGTCTGGGCGTTGCAT
GCGATGAGGACTGTGGCTATGGAACTGGCTGTGATTTTGGATGCGGTCAG
GCCCATGGCGTTGATCCCGGAAGCTTTCTAGGTCCGGGAACC
BO08366.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:22:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 1554 | CG4955-RA | 1..876 | 17..892 | 4361 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 138..1013 | 17..892 | 4369 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17081584..17082459 | 17..892 | 4369 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:32:03 has no hits.
BO08366.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:18 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:06 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:29:47 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..954 | 7..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 20:04:45 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 132..1013 | 7..892 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 20:04:45 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17081578..17082459 | 7..892 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:29:47 Download gff for
BO08366.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16975611..16976492 | 7..892 | 99 | | Plus |
BO08366.complete Sequence
1585 bp (1585 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631165
> BO08366.complete
GAAGTTATCAGTCGACATGGAGAGGCGAAGACCCCGAAAGTCCTCGCGTA
AATACGTGTGCTCCAAATCAAACTCTTCAGTTGGAGGAGGAGTAGAGGAA
GACAGTGGCTCATCATTGCCTGCCACCGCCAAAGCGTTACTCCTCCAGCC
GGACGGTAATAAAGCACCAACCATGACATCCCTTCTGGGCGAACGACTCA
GAAGAGTTTCTCGCATCGCAAGAGCTCCGCACAGCCTACAAGTTACCGAA
AATCCAGAAGAAGGTGGAGCACCAATCGTACCACTAAGAGAATCCGGCGC
ATCGGAAGTGTCAGAAGTAAATCCGGGGGTTATGGTCATTCCGGAGTCGG
CCAGTCCCCGGGGATCGGCGGTGCATGGACAACACGCTAGCTTGGTCTTC
AGTGCTGAAGCCAGGGATTCGGACAGTACGCGGATATCGGAGGAAATGGT
GGAAGTGTTCCAAACCTCTTCGGCGAGAACCACATCCAATGAGCCCGCAG
GGGGCAATCTGCGCTTTGAAACCACTCCCGTGGCTGTAAGCGAAAGTATG
GTTGGCAATATAAACTTCTCCCCGAACGCCATCTACGATCAGAACAGGTA
TAGCAGCATGATGTCCAACGGGGATTACAATAATGGCAACAGGGGTGAGA
GTGAGAGGAGCGTGGGAGCCTGCCACCATGGTTGGGCGGCGCGACAACAA
CAAGTTGCCGCTGGACCTGCCGGCAGAGACACCCTGGGATTCGCCATCAG
TCTGGGCGCCGCTAATTTGGGCCAGAACCGATGCAGTCTGGGCGTTGCAT
GCGATGAGGACTGTGGCTATGGAACTGGCTGTGATTTTGGATGCGGTCAG
GCCCATGGCGTTGATCCCGGAAGCTTTCTAGGTCCGGGAACCATGGGAAC
TGGTCCATTAATATTGACAACGGGATCAGGAGGCCCACCTGTACAGAGCG
CCCTACGAGGAGCTCAAGGTGGCGGCTATAAGCAAGTTGGCGCCGGGCAG
CGGGGAACTTTTGGAACAGATTTCGGAAGTGAGCAGCTTAACTTCTTCAT
TACCTTCCTATTGGAGGTCCTCGGTGTTTTAGTTTTTTTTGCCATCTGCA
CGATAACATTTTGGATTACTCTGGGCTACCATGTTGTCCAGTTGCTGGTG
GACCTGAAGAACGCCGATCGCAACATTCAGGTGGCGGTGGCCATTGTGTT
CGGGCTGCTGCTCGTTGCGTTTGCCATATCGCAGGTGACCAACCTCAGTG
GTTCCTGCTGTCATTCACGGGATCGAGCCCGTTCCAGAACCAAAGGTGGT
GGCATTGGCTTCTTTCACAGATCCACCAAGCCAAAGACCAAGAGCTGTGC
ATCCAAAACCAAGACCTGTGCTCATAAGCCGAAGATTAAGAAGGCAGCCA
CTTGTGGACCCAGCCTGGGCTTTCACACGCACCGCAAAACGAGGTATACG
GATTGCGAGGGACGGGCAATTTTCTTGAGCTCGAGACGATATGCTATTCC
GACTGAGATGAAACAACCACCCACCATTGTGCTCTGGATGCGCGACACAC
TGGTTCGCATGTTGCAGGCAAGCTTTCTAGACCAT
BO08366.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:09:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1554 | CG4955-PA | 1..1551 | 17..1567 | 7755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:09:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-RA | 1838 | CG4955-RA | 138..1688 | 17..1567 | 7755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:09:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17081584..17082650 | 17..1083 | 5335 | 100 | Plus |
| X | 23542271 | X | 17082723..17083206 | 1084..1567 | 2420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:09:32 has no hits.
BO08366.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:46 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 1..1554 | 17..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:06 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..1632 | 7..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:04:01 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 79..1629 | 17..1569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:46 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 73..1632 | 7..1571 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:16:04 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4955-RA | 138..1688 | 17..1569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:16:04 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17081584..17082650 | 17..1083 | 100 | -> | Plus |
| X | 17082723..17083206 | 1084..1569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:04:01 Download gff for
BO08366.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16975617..16976683 | 17..1083 | 100 | -> | Plus |
| arm_X | 16976756..16977239 | 1084..1569 | 99 | | Plus |
BO08366.pep Sequence
Translation from 16 to 1585
> BO08366.pep
MERRRPRKSSRKYVCSKSNSSVGGGVEEDSGSSLPATAKALLLQPDGNKA
PTMTSLLGERLRRVSRIARAPHSLQVTENPEEGGAPIVPLRESGASEVSE
VNPGVMVIPESASPRGSAVHGQHASLVFSAEARDSDSTRISEEMVEVFQT
SSARTTSNEPAGGNLRFETTPVAVSESMVGNINFSPNAIYDQNRYSSMMS
NGDYNNGNRGESERSVGACHHGWAARQQQVAAGPAGRDTLGFAISLGAAN
LGQNRCSLGVACDEDCGYGTGCDFGCGQAHGVDPGSFLGPGTMGTGPLIL
TTGSGGPPVQSALRGAQGGGYKQVGAGQRGTFGTDFGSEQLNFFITFLLE
VLGVLVFFAICTITFWITLGYHVVQLLVDLKNADRNIQVAVAIVFGLLLV
AFAISQVTNLSGSCCHSRDRARSRTKGGGIGFFHRSTKPKTKSCASKTKT
CAHKPKIKKAATCGPSLGFHTHRKTRYTDCEGRAIFLSSRRYAIPTEMKQ
PPTIVLWMRDTLVRMLQASFLDH
BO08366.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4955-PA | 517 | CG4955-PA | 1..517 | 1..517 | 2695 | 100 | Plus |
