Clone Sequence Records
BO08373.3prime Sequence
869 bp (787 high quality bases) assembled on 2006-01-06
> BO08373.3prime
ATGGTCTAGAAAGCTTGCATCGCCGAAGCCAGCGAACTCATCCACATAGG
TGGACATCAGATCAGAGCGACAGGAGACCTGAATGTTGGAGGCATTGGCC
TTGAGCCGAAGGTTCGCGTCGTTGGTGAGCAGGATCATGTGGGGAACCTG
CGCCTGCAGCTGCAGGCAGCAATTCAAAATGCTGTCATCCGGGCAGTCGA
TCTTGATCAGGTGATCCGCCTCCTCCAAAGCGGATTGAGCTTGTATTTGA
AAGCTTTCGTCGAACTTGGTGTTCAAAAAGCGTATTGCTCGCATGGCAAT
CACACGCTGCAGGCAGTCCGACTGGTACTTGCTCTTTAGCTTGTCCAGCT
CTTTGATTACTATGTACGGAAGGTACAGCATGCTGCCCACCGTGCCCGGC
AGCACCACATCGGTCAGTCTCTCCACGAACTTGTGGTTGTGTATGAGGAC
GTTGGTGTCCAGCACAAAGTACATGTAATCCTCAAGCCTTGGGGGCAGCT
CCTCGGCATCGGCCGCCTGCAGCATCAATATAGTGTCGTCCTCTTCCTTA
GCCTCATCCTGACCTTTCTGTGGCGCCTCCTCTTCAATGGACTCCGCCGG
CAGCATCAATAGAGTGTCGTCCCCTTTCTTAGCCTCATCCTGATCATTCT
GTGCCGCCTCCTCTTCAATAGACTCCTGCCATTCCATGGGCTCGACCTCC
ATATCGCTGGCCGTCGAGCCATCAAATGCACTTGGATTTGTGATGTTGCA
GGCTTCTGGTTGTTTTTCTATCACCTCTTCGTTGATCTTGGCCACAATAT
TGTTGTTGCGCTCCTCATATAGCTGCTTCTGCTGCAGCGAAGCTCTTAAC
AGCATGTCGACTGATAACT
BO08373.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 1215 | CG7206-RB | 375..1212 | 856..19 | 4190 | 100 | Minus |
CG7206-PA | 840 | CG7206-RA | 1..837 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1357 | 856..19 | 4190 | 100 | Minus |
CG7206-RB | 1585 | CG7206-RB | 462..1299 | 856..19 | 4190 | 100 | Minus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 676..594 | 295 | 90.4 | Minus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 595..513 | 295 | 90.4 | Minus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 595..513 | 295 | 90.4 | Minus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 676..594 | 295 | 90.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:30:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 240..856 | 3085 | 100 | Plus |
X | 23542271 | X | 18089011..18089233 | 19..241 | 1115 | 100 | Plus |
X | 23542271 | X | 18089568..18089650 | 594..676 | 295 | 90.4 | Plus |
X | 23542271 | X | 18089649..18089731 | 513..595 | 295 | 90.4 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:30:55 has no hits.
BO08373.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:28 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:22 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 15..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:36 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 12..861 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:53 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 12..861 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:53 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089006..18089231 | 12..239 | 98 | <- | Plus |
X | 18089295..18089915 | 240..861 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:36 Download gff for
BO08373.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983039..17983264 | 12..239 | 98 | <- | Plus |
arm_X | 17983328..17983948 | 240..861 | 99 | | Plus |
BO08373.5prime Sequence
869 bp (868 high quality bases) assembled on 2006-01-06
> BO08373.5prime
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATGCAAGCTTTCTAGACC
BO08373.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 1215 | CG7206-RB | 375..1212 | 16..853 | 4190 | 100 | Plus |
CG7206-PA | 840 | CG7206-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1357 | 16..853 | 4190 | 100 | Plus |
CG7206-RB | 1585 | CG7206-RB | 462..1299 | 16..853 | 4190 | 100 | Plus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 196..278 | 295 | 90.4 | Plus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 196..278 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 632..16 | 3085 | 100 | Minus |
X | 23542271 | X | 18089011..18089233 | 853..631 | 1115 | 100 | Minus |
X | 23542271 | X | 18089568..18089650 | 278..196 | 295 | 90.4 | Minus |
X | 23542271 | X | 18089649..18089731 | 359..277 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:33:51 has no hits.
BO08373.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:29 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 11..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:23 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-PB | 371..1215 | 11..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:22 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 11..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:29 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 458..1304 | 11..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:29 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089006..18089231 | 633..860 | 98 | <- | Minus |
X | 18089295..18089915 | 11..632 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:22 Download gff for
BO08373.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983039..17983264 | 633..860 | 98 | <- | Minus |
arm_X | 17983328..17983948 | 11..632 | 99 | | Minus |
BO08373.complete Sequence
871 bp (871 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631168
> BO08373.complete
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATGCAAGCTTTCTAGACCAT
BO08373.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RB | 1215 | CG7206-PB | 375..1212 | 16..853 | 4190 | 100 | Plus |
CG7206-RB | 1215 | CG7206-PB | 636..718 | 196..278 | 295 | 90.4 | Plus |
CG7206-RB | 1215 | CG7206-PB | 555..637 | 277..359 | 295 | 90.4 | Plus |
CG7206-RC | 474 | CG7206-PC | 433..474 | 16..57 | 210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-RC | 1643 | CG7206-RC | 520..1357 | 16..853 | 4190 | 100 | Plus |
CG7206-RB | 1585 | CG7206-RB | 462..1299 | 16..853 | 4190 | 100 | Plus |
CG7206-RC | 1643 | CG7206-RC | 700..782 | 277..359 | 295 | 90.4 | Plus |
CG7206-RC | 1643 | CG7206-RC | 781..863 | 196..278 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 642..724 | 277..359 | 295 | 90.4 | Plus |
CG7206-RB | 1585 | CG7206-RB | 723..805 | 196..278 | 295 | 90.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18089295..18089911 | 632..16 | 3085 | 100 | Minus |
X | 23542271 | X | 18089011..18089233 | 853..631 | 1115 | 100 | Minus |
X | 23542271 | X | 18089568..18089650 | 278..196 | 295 | 90.4 | Minus |
X | 23542271 | X | 18089649..18089731 | 359..277 | 295 | 90.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:25:24 has no hits.
BO08373.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:13 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 371..1215 | 11..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:29 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 427..1273 | 11..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:18 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 463..1299 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:14 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 427..1273 | 11..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:35 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7206-RB | 463..1299 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:35 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18089009..18089231 | 633..855 | 99 | <- | Minus |
X | 18089295..18089910 | 17..632 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:18 Download gff for
BO08373.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17983042..17983264 | 633..855 | 99 | <- | Minus |
arm_X | 17983328..17983943 | 17..632 | 100 | | Minus |
BO08373.pep Sequence
Translation from 16 to 871
> BO08373.pep
MLLRASLQQKQLYEERNNNIVAKINEEVIEKQPEACNITNPSAFDGSTAS
DMEVEPMEWQESIEEEAAQNDQDEAKKGDDTLLMLPAESIEEEAPQKGQD
EAKEEDDTILMLQAADAEELPPRLEDYMYFVLDTNVLIHNHKFVERLTDV
VLPGTVGSMLYLPYIVIKELDKLKSKYQSDCLQRVIAMRAIRFLNTKFDE
SFQIQAQSALEEADHLIKIDCPDDSILNCCLQLQAQVPHMILLTNDANLR
LKANASNIQVSCRSDLMSTYVDEFAGFGDASFLDH
BO08373.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7206-PB | 404 | CG7206-PB | 126..404 | 1..279 | 1424 | 100 | Plus |