Clone BO08373 Report

Search the DGRC for BO08373

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG7206-RA
Protein status:BO08373.pep: validated full length
Sequenced Size:871

Clone Sequence Records

BO08373.3prime Sequence

869 bp (787 high quality bases) assembled on 2006-01-06

> BO08373.3prime
ATGGTCTAGAAAGCTTGCATCGCCGAAGCCAGCGAACTCATCCACATAGG
TGGACATCAGATCAGAGCGACAGGAGACCTGAATGTTGGAGGCATTGGCC
TTGAGCCGAAGGTTCGCGTCGTTGGTGAGCAGGATCATGTGGGGAACCTG
CGCCTGCAGCTGCAGGCAGCAATTCAAAATGCTGTCATCCGGGCAGTCGA
TCTTGATCAGGTGATCCGCCTCCTCCAAAGCGGATTGAGCTTGTATTTGA
AAGCTTTCGTCGAACTTGGTGTTCAAAAAGCGTATTGCTCGCATGGCAAT
CACACGCTGCAGGCAGTCCGACTGGTACTTGCTCTTTAGCTTGTCCAGCT
CTTTGATTACTATGTACGGAAGGTACAGCATGCTGCCCACCGTGCCCGGC
AGCACCACATCGGTCAGTCTCTCCACGAACTTGTGGTTGTGTATGAGGAC
GTTGGTGTCCAGCACAAAGTACATGTAATCCTCAAGCCTTGGGGGCAGCT
CCTCGGCATCGGCCGCCTGCAGCATCAATATAGTGTCGTCCTCTTCCTTA
GCCTCATCCTGACCTTTCTGTGGCGCCTCCTCTTCAATGGACTCCGCCGG
CAGCATCAATAGAGTGTCGTCCCCTTTCTTAGCCTCATCCTGATCATTCT
GTGCCGCCTCCTCTTCAATAGACTCCTGCCATTCCATGGGCTCGACCTCC
ATATCGCTGGCCGTCGAGCCATCAAATGCACTTGGATTTGTGATGTTGCA
GGCTTCTGGTTGTTTTTCTATCACCTCTTCGTTGATCTTGGCCACAATAT
TGTTGTTGCGCTCCTCATATAGCTGCTTCTGCTGCAGCGAAGCTCTTAAC
AGCATGTCGACTGATAACT

BO08373.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-PB 1215 CG7206-RB 375..1212 856..19 4190 100 Minus
CG7206-PA 840 CG7206-RA 1..837 855..19 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-RC 1643 CG7206-RC 520..1357 856..19 4190 100 Minus
CG7206-RB 1585 CG7206-RB 462..1299 856..19 4190 100 Minus
CG7206-RC 1643 CG7206-RC 781..863 676..594 295 90.4 Minus
CG7206-RC 1643 CG7206-RC 700..782 595..513 295 90.4 Minus
CG7206-RB 1585 CG7206-RB 642..724 595..513 295 90.4 Minus
CG7206-RB 1585 CG7206-RB 723..805 676..594 295 90.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:30:51
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18089295..18089911 240..856 3085 100 Plus
X 23542271 X 18089011..18089233 19..241 1115 100 Plus
X 23542271 X 18089568..18089650 594..676 295 90.4 Plus
X 23542271 X 18089649..18089731 513..595 295 90.4 Plus
Blast to na_te.dros performed on 2015-01-31 16:30:55 has no hits.

BO08373.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:28 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-PB 371..1215 15..861 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:22 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-PB 371..1215 15..861 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:36 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 458..1304 12..861 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:53 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 458..1304 12..861 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:53 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18089006..18089231 12..239 98 <- Plus
X 18089295..18089915 240..861 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:36 Download gff for BO08373.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17983039..17983264 12..239 98 <- Plus
arm_X 17983328..17983948 240..861 99   Plus

BO08373.5prime Sequence

869 bp (868 high quality bases) assembled on 2006-01-06

> BO08373.5prime
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATGCAAGCTTTCTAGACC

BO08373.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-PB 1215 CG7206-RB 375..1212 16..853 4190 100 Plus
CG7206-PA 840 CG7206-RA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-RC 1643 CG7206-RC 520..1357 16..853 4190 100 Plus
CG7206-RB 1585 CG7206-RB 462..1299 16..853 4190 100 Plus
CG7206-RC 1643 CG7206-RC 781..863 196..278 295 90.4 Plus
CG7206-RC 1643 CG7206-RC 700..782 277..359 295 90.4 Plus
CG7206-RB 1585 CG7206-RB 642..724 277..359 295 90.4 Plus
CG7206-RB 1585 CG7206-RB 723..805 196..278 295 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18089295..18089911 632..16 3085 100 Minus
X 23542271 X 18089011..18089233 853..631 1115 100 Minus
X 23542271 X 18089568..18089650 278..196 295 90.4 Minus
X 23542271 X 18089649..18089731 359..277 295 90.4 Minus
Blast to na_te.dros performed on 2015-02-10 21:33:51 has no hits.

BO08373.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:29 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-PB 371..1215 11..857 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:23 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-PB 371..1215 11..857 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:41:22 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 458..1304 11..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:53:29 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 458..1304 11..860 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:53:29 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18089006..18089231 633..860 98 <- Minus
X 18089295..18089915 11..632 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:41:22 Download gff for BO08373.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 17983039..17983264 633..860 98 <- Minus
arm_X 17983328..17983948 11..632 99   Minus

BO08373.complete Sequence

871 bp (871 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631168

> BO08373.complete
GAAGTTATCAGTCGACATGCTGTTAAGAGCTTCGCTGCAGCAGAAGCAGC
TATATGAGGAGCGCAACAACAATATTGTGGCCAAGATCAACGAAGAGGTG
ATAGAAAAACAACCAGAAGCCTGCAACATCACAAATCCAAGTGCATTTGA
TGGCTCGACGGCCAGCGATATGGAGGTCGAGCCCATGGAATGGCAGGAGT
CTATTGAAGAGGAGGCGGCACAGAATGATCAGGATGAGGCTAAGAAAGGG
GACGACACTCTATTGATGCTGCCGGCGGAGTCCATTGAAGAGGAGGCGCC
ACAGAAAGGTCAGGATGAGGCTAAGGAAGAGGACGACACTATATTGATGC
TGCAGGCGGCCGATGCCGAGGAGCTGCCCCCAAGGCTTGAGGATTACATG
TACTTTGTGCTGGACACCAACGTCCTCATACACAACCACAAGTTCGTGGA
GAGACTGACCGATGTGGTGCTGCCGGGCACGGTGGGCAGCATGCTGTACC
TTCCGTACATAGTAATCAAAGAGCTGGACAAGCTAAAGAGCAAGTACCAG
TCGGACTGCCTGCAGCGTGTGATTGCCATGCGAGCAATACGCTTTTTGAA
CACCAAGTTCGACGAAAGCTTTCAAATACAAGCTCAATCCGCTTTGGAGG
AGGCGGATCACCTGATCAAGATCGACTGCCCGGATGACAGCATTTTGAAT
TGCTGCCTGCAGCTGCAGGCGCAGGTTCCCCACATGATCCTGCTCACCAA
CGACGCGAACCTTCGGCTCAAGGCCAATGCCTCCAACATTCAGGTCTCCT
GTCGCTCTGATCTGATGTCCACCTATGTGGATGAGTTCGCTGGCTTCGGC
GATGCAAGCTTTCTAGACCAT

BO08373.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-RB 1215 CG7206-PB 375..1212 16..853 4190 100 Plus
CG7206-RB 1215 CG7206-PB 636..718 196..278 295 90.4 Plus
CG7206-RB 1215 CG7206-PB 555..637 277..359 295 90.4 Plus
CG7206-RC 474 CG7206-PC 433..474 16..57 210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-RC 1643 CG7206-RC 520..1357 16..853 4190 100 Plus
CG7206-RB 1585 CG7206-RB 462..1299 16..853 4190 100 Plus
CG7206-RC 1643 CG7206-RC 700..782 277..359 295 90.4 Plus
CG7206-RC 1643 CG7206-RC 781..863 196..278 295 90.4 Plus
CG7206-RB 1585 CG7206-RB 642..724 277..359 295 90.4 Plus
CG7206-RB 1585 CG7206-RB 723..805 196..278 295 90.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18089295..18089911 632..16 3085 100 Minus
X 23542271 X 18089011..18089233 853..631 1115 100 Minus
X 23542271 X 18089568..18089650 278..196 295 90.4 Minus
X 23542271 X 18089649..18089731 359..277 295 90.4 Minus
Blast to na_te.dros performed on 2014-11-28 00:25:24 has no hits.

BO08373.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:13 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 371..1215 11..857 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:04:29 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 427..1273 11..860 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:18 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 463..1299 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:14 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 427..1273 11..860 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:35 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
CG7206-RB 463..1299 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:35 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
X 18089009..18089231 633..855 99 <- Minus
X 18089295..18089910 17..632 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:18 Download gff for BO08373.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17983042..17983264 633..855 99 <- Minus
arm_X 17983328..17983943 17..632 100   Minus

BO08373.pep Sequence

Translation from 16 to 871

> BO08373.pep
MLLRASLQQKQLYEERNNNIVAKINEEVIEKQPEACNITNPSAFDGSTAS
DMEVEPMEWQESIEEEAAQNDQDEAKKGDDTLLMLPAESIEEEAPQKGQD
EAKEEDDTILMLQAADAEELPPRLEDYMYFVLDTNVLIHNHKFVERLTDV
VLPGTVGSMLYLPYIVIKELDKLKSKYQSDCLQRVIAMRAIRFLNTKFDE
SFQIQAQSALEEADHLIKIDCPDDSILNCCLQLQAQVPHMILLTNDANLR
LKANASNIQVSCRSDLMSTYVDEFAGFGDASFLDH

BO08373.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG7206-PB 404 CG7206-PB 126..404 1..279 1424 100 Plus