Clone Sequence Records
BO08374.3prime Sequence
912 bp (837 high quality bases) assembled on 2006-01-06
> BO08374.3prime
ATGGTCTAGAAAGCTTGCTAAGAGTCGAACTACAAGCTGTATGAGGAAAG
CAAGACTTCCCAACACCAAAGCGATGCCAAAATAGCGTTGGATTAGTCTT
TCCCGACTCCTGGTTTGCACTTGAACGTTTGGTAACTCCTGATTTTTTGC
ACACCTCGTCCAATCGCGTTCGTCGTCTAAAATTTCTCCCACCATGCTAA
ACTTGCTCGCACTGGTAATTCGCACATGGACACGAGTACCAAGAAGGTTA
TCCCGCATGGGCAGCAGTACTTGCTCGTAGCTCTTGTTGTGGCCCACGTA
ATGGAGCTTGTCGTGTGAAACTTCTGTGACCAAGACGGTGTATATTTCAC
CCACTCTGTCCGCATAGGGTTCATAGCTGTAGAAGAGATCCGTGAGACGT
TTAGTTCGTTTCTTCACCAGGTTTGCGGGGATGCGATCCATCTTAGCAGC
TGGTGTGCCCGGACGAGGGAAGAACTGATTGATGAACAGACTGGGAAAGC
GATATTTGGCGCAAAGGGTCATCGTCTCCTCGAAATCGTCTTCTGTCTCT
GTTGGGAAACCACAAATTATATCCGTGGCAATCGTGACACCGGGAACTCG
TTCCCTTAAGAAATCCACAACGTGCTCAAAGTCCTGCCGACAGTACTCTC
GTTTCATCTCGCCCAGCACAGAGTCACTACCACTCTGTACAGGAACATGT
AAAAAGGAGTAGACTCTCGGGTGCTGCAAGACGTTGGCCACTTCCTCGAG
ATGCTCCAGTATATACGGTGGATTGGTCATGCCTACACGCAACATGCAGT
GCTCGGGGATCACTTCCACCAGTTGCCAGAGCAATTCCGGCAATGAGCTT
CCAATATCTCGACCATAAGCTCCTGTATCCTCGGAAGTAAAGCAGATCTC
GCAGCAGCCTTC
BO08374.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-PA | 1659 | CG6550-RA | 763..1656 | 912..19 | 4420 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:30:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-RA | 1782 | CG6550-RA | 853..1746 | 912..19 | 4440 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 20:30:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17425706..17426373 | 19..686 | 3340 | 100 | Plus |
| 2R | 25286936 | 2R | 17426432..17426659 | 685..912 | 1110 | 99.1 | Plus |
Blast to na_te.dros performed on 2015-02-02 20:30:34 has no hits.
BO08374.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:29 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-PA | 763..1659 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:24 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-PA | 763..1659 | 18..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:04:27 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 853..1750 | 13..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 21:16:13 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 853..1750 | 13..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 21:16:13 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17425702..17426371 | 13..684 | 99 | <- | Plus |
| 2R | 17426432..17426659 | 685..912 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:04:27 Download gff for
BO08374.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13313207..13313876 | 13..684 | 99 | <- | Plus |
| arm_2R | 13313937..13314164 | 685..912 | 99 | | Plus |
BO08374.5prime Sequence
942 bp (862 high quality bases) assembled on 2006-01-06
> BO08374.5prime
GAAGTTATCAGTCGACATGTACCACCTTGGACAGGATCTGCCAGGCAACG
ATGTGGATGATATAGAGGATCTGATATCCGCCGATGATGTCAAGCCGCGT
GAGCGCTACGAAAACAAAAAAACCGTTACGGTTCGGGCCAAGAAACGATC
CCAAATTCGACTTGAATCTCAAGAGGAGGAGGAAAAGCCGAAGCCCACGA
TCCACGAGAGTGTCATACCCGGCACCCAGAAAGTTTTTGTGAAAACATGG
GGCTGCGCCCACAACAATTCGGACTCGGAGTACATGGCCGGGCAGTTGGC
TGCCTACGGATATAGATTGAGTGGAAAGGAGGAGGCGGATCTGTGGCTGC
TCAATAGCTGCACGGTTAAGAATCCTTCGGAGGACACTTTCCGCAACGAG
ATTGAGTCGGGAATGCGAAATGGCAAGCACGTCGTGGTTGCCGGTTGCGT
TCCCCAGGGAGCTCCCAAATCGGACTATCTGAACGGTCTTTCCGTAATCG
GTGTCCAGCAAATCGACCGAGTGGTGGAGGTCGTTGAAGAGACCCTCAAG
GGTCACAGTGTCCAGCTGTTGCAAAACAAAAAGAAGGTCCATGGTCGGCG
GGTAGCTGGAGCACCACTCTCATTACCCAAAGTCCGCAAAAATCCATTAA
TAGAAATCATATCCATCAACTCTGGATGCCTAAATCAATGTACCTACTGC
AAGACTAAACACGCCCGCGGTGACTTGGCCAGCTATCCCCCGGAGGAGGT
TGTAGAGCGCGCCCGCCAATCGTTTGCTGAAGGCTGCTGCGAGATCTGGC
TTACTTCCGAGGATACAGGAGCTTATGGTCGAGATATTGGAAGCTCATTG
CCGGAATTGCTCTGGNCACTGGTGGAAGTGATCCCCGAGCACTGCATGTT
GCGTGTAGGCATGACCAATCCACCGTATATACTGGAGCATCT
BO08374.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-PA | 1659 | CG6550-RA | 1..926 | 17..942 | 4586 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:02:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-RA | 1782 | CG6550-RA | 91..1016 | 17..942 | 4604 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17426496..17427421 | 942..17 | 4604 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:02:40 has no hits.
BO08374.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:30 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:26 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-PA | 1..926 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:35:30 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 91..1016 | 17..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:44:06 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 91..1016 | 17..942 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:44:06 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17426496..17427421 | 17..942 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:35:30 Download gff for
BO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13314001..13314926 | 17..942 | 99 | | Minus |
BO08374.complete Sequence
1690 bp (1690 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631169
> BO08374.complete
GAAGTTATCAGTCGACATGTACCACCTTGGACAGGATCTGCCAGGCAACG
ATGTGGATGATATAGAGGATCTGATATCCGCCGATGATGTCAAGCCGCGT
GAGCGCTACGAAAACAAAAAAACCGTTACGGTTCGGGCCAAGAAACGATC
CCAAATTCGACTTGAATCTCAAGAGGAGGAGGAAAAGCCGAAGCCCACGA
TCCACGAGAGTGTCATACCCGGCACCCAGAAAGTTTTTGTGAAAACATGG
GGCTGCGCCCACAACAATTCGGACTCGGAGTACATGGCCGGGCAGTTGGC
TGCCTACGGATATAGATTGAGTGGAAAGGAGGAGGCGGATCTGTGGCTGC
TCAATAGCTGCACGGTTAAGAATCCTTCGGAGGACACTTTCCGCAACGAG
ATTGAGTCGGGAATGCGAAATGGCAAGCACGTCGTGGTTGCCGGTTGCGT
TCCCCAGGGAGCTCCCAAATCGGACTATCTGAACGGTCTTTCCGTAATCG
GTGTCCAGCAAATCGACCGAGTGGTGGAGGTCGTTGAAGAGACCCTCAAG
GGTCACAGTGTCCAGCTGTTGCAAAACAAAAAGAAGGTCCATGGTCGGCG
GGTAGCTGGAGCACCACTCTCATTACCCAAAGTCCGCAAAAATCCATTAA
TAGAAATCATATCCATCAACTCTGGATGCCTAAATCAATGTACCTACTGC
AAGACTAAACACGCCCGCGGTGACTTGGCCAGCTATCCCCCGGAGGAGGT
TGTAGAGCGCGCCCGCCAATCGTTTGCTGAAGGCTGCTGCGAGATCTGGC
TTACTTCCGAGGATACAGGAGCTTATGGTCGAGATATTGGAAGCTCATTG
CCGGAATTGCTCTGGCAACTGGTGGAAGTGATCCCCGAGCACTGCATGTT
GCGTGTAGGCATGACCAATCCACCGTATATACTGGAGCATCTCGAGGAAG
TGGCCAACGTCTTGCAGCACCCGAGAGTCTACTCCTTTTTACATGTTCCT
GTACAGAGTGGTAGTGACTCTGTGCTGGGCGAGATGAAACGAGAGTACTG
TCGGCAGGACTTTGAGCACGTTGTGGATTTCTTAAGGGAACGAGTTCCCG
GTGTCACGATTGCCACGGATATAATTTGTGGTTTCCCAACAGAGACAGAA
GACGATTTCGAGGAGACGATGACCCTTTGCGCCAAATATCGCTTTCCCAG
TCTGTTCATCAATCAGTTCTTCCCTCGTCCGGGCACACCAGCTGCTAAGA
TGGATCGCATCCCCGCAAACCTGGTGAAGAAACGAACTAAACGTCTCACG
GATCTCTTCTACAGCTATGAACCCTATGCGGACAGAGTGGGTGAAATATA
CACCGTCTTGGTCACAGAAGTTTCACACGACAAGCTCCATTACGTGGGCC
ACAACAAGAGCTACGAGCAAGTACTGCTGCCCATGCGGGATAACCTTCTT
GGTACTCGTGTCCATGTGCGAATTACCAGTGCGAGCAAGTTTAGCATGGT
GGGAGAAATTTTAGACGACGAACGCGATTGGACGAGGTGTGCAAAAAATC
AGGAGTTACCAAACGTTCAAGTGCAAACCAGGAGTCGGGAAAGACTAATC
CAACGCTATTTTGGCATCGCTTTGGTGTTGGGAAGTCTTGCTTTCCTCAT
ACAGCTTGTAGTTCGACTCTTAGCAAGCTTTCTAGACCAT
BO08374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:49:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-RA | 1659 | CG6550-PA | 1..1656 | 17..1672 | 8280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:49:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-RA | 1782 | CG6550-RA | 91..1746 | 17..1672 | 8280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:49:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17426432..17427421 | 1006..17 | 4950 | 100 | Minus |
| 2R | 25286936 | 2R | 17425706..17426373 | 1672..1005 | 3340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 12:49:57 has no hits.
BO08374.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:15 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 1..1659 | 17..1673 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:34 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 59..1718 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:37:58 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 91..1746 | 17..1674 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:15 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 59..1718 | 17..1678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:05:41 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6550-RA | 91..1746 | 17..1674 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:05:41 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17425702..17426371 | 1007..1674 | 99 | <- | Minus |
| 2R | 17426432..17427421 | 17..1006 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:37:58 Download gff for
BO08374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13313207..13313876 | 1007..1674 | 99 | <- | Minus |
| arm_2R | 13313937..13314926 | 17..1006 | 100 | | Minus |
BO08374.pep Sequence
Translation from 16 to 1690
> BO08374.pep
MYHLGQDLPGNDVDDIEDLISADDVKPRERYENKKTVTVRAKKRSQIRLE
SQEEEEKPKPTIHESVIPGTQKVFVKTWGCAHNNSDSEYMAGQLAAYGYR
LSGKEEADLWLLNSCTVKNPSEDTFRNEIESGMRNGKHVVVAGCVPQGAP
KSDYLNGLSVIGVQQIDRVVEVVEETLKGHSVQLLQNKKKVHGRRVAGAP
LSLPKVRKNPLIEIISINSGCLNQCTYCKTKHARGDLASYPPEEVVERAR
QSFAEGCCEIWLTSEDTGAYGRDIGSSLPELLWQLVEVIPEHCMLRVGMT
NPPYILEHLEEVANVLQHPRVYSFLHVPVQSGSDSVLGEMKREYCRQDFE
HVVDFLRERVPGVTIATDIICGFPTETEDDFEETMTLCAKYRFPSLFINQ
FFPRPGTPAAKMDRIPANLVKKRTKRLTDLFYSYEPYADRVGEIYTVLVT
EVSHDKLHYVGHNKSYEQVLLPMRDNLLGTRVHVRITSASKFSMVGEILD
DERDWTRCAKNQELPNVQVQTRSRERLIQRYFGIALVLGSLAFLIQLVVR
LLASFLDH
BO08374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6550-PA | 552 | CG6550-PA | 1..552 | 1..552 | 2896 | 100 | Plus |
| CG6345-PA | 583 | CG6345-PA | 62..529 | 42..472 | 339 | 23.2 | Plus |
