Clone BO08375 Report

Search the DGRC for BO08375

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptPhKgamma-RB
Protein status:BO08375.pep: validated full length
Sequenced Size:1291

Clone Sequence Records

BO08375.3prime Sequence

896 bp (877 high quality bases) assembled on 2006-01-06

> BO08375.3prime
ATGGTCTAGAAAGCTTGCTCGGCTGAGATTGTTGATGTAGAGCGCGTGGA
GCTCCGTGCGGGGAGTATTCTCGAAGAGGGCGGCCCGATTCTGGCCCTCA
CCCTTCTTGACCCAATGCCCGTAGACACGGAAGGCACAGCCATCGATGAC
CTTGCGCAGAACCTTGACGCGATACGGATCCCGGATGGCCTCCTCAACGT
GCAGCGGCTCGGCGGTGAAGCGTAGGCGCCGTATCCGAATGATGGCCCGT
ATCACGAGTATGGCGAATTGGAACTTTTTGCGCGCGTTGAAGCGACTTTG
TTTGCGCAGCAGTGCGATCTCAGTGATGCGACTCATTCGTCGGGACTTGG
TCGACAGGCTGCGCTTGAGGCCATCAATGTTTTGCTCGAACAGCATTTGG
TTGAAGAATGGATGTCTTAATACTTCCTTGACGGTTATACGTTGCGAAGG
ATCAACGACTAGACATTTGCGTATCAGATCCTTGGGATCCTCTGAAATAT
CAGCCCACTCCGGCGAGGTGAAGCTGTACTTGCCCTCCATGATATTCCGC
AGCATGACCATCTGCTTGCGGTGCCAGAAAGGTGGACAACCGACGAGCAG
CGTAAACATAATCACGCCACAGGCCCATATGTCGACTTCCTGCGAGTAGC
CGGGGGATCCCTCGAACATGTTGCACTTGAGCGTTTCGGGAGCCAAATAA
CCCGGCGTTCCGCACAGATTTGTAAGTTTCTCGCCCTCTTGCAACTGCTT
GGCGAAGCCAAAATCCGTGATCTTAACGTTGTGGTTCTCGTCCAGCAAGA
TATTCTCGGGCTTAAGATCCCGATGGACAATGCTCTTCGCGTGTATGTAC
TCGACGCCCTCAAAGATTTGTCGCATAATGGTGCGCGTCTTCTTCT

BO08375.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG1830-PB 1260 PhKgamma-RB 380..1257 896..19 4390 100 Minus
CG1830-PC 1509 PhKgamma-RC 380..882 896..394 2515 100 Minus
CG1830-PA 1509 PhKgamma-RA 380..882 896..394 2515 100 Minus
CG1830-PC 1509 PhKgamma-RC 1393..1509 310..194 585 100 Minus
CG1830-PA 1509 PhKgamma-RA 1393..1509 310..194 585 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 891..1768 896..19 4390 100 Minus
PhKgamma-RB 2421 CG1830-RB 790..1667 896..19 4390 100 Minus
PhKgamma-RF 2232 CG1830-RF 685..1190 896..391 2530 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:32:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697419..11697595 896..720 885 100 Minus
X 23542271 X 11703289..11703450 310..149 810 100 Minus
X 23542271 X 11698299..11698435 628..492 685 100 Minus
X 23542271 X 11703507..11703640 152..19 670 100 Minus
X 23542271 X 11698493..11698597 498..394 510 99 Minus
X 23542271 X 11697661..11697751 719..629 455 100 Minus
X 23542271 X 11699322..11699406 394..310 425 100 Minus
Blast to na_te.dros performed 2015-01-31 16:33:02
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2847..2898 151..100 116 69.2 Minus

BO08375.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:31 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 380..1260 18..896 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:27 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 380..1260 18..896 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:57 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 790..1667 19..896 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:43:08 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 790..1667 19..896 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:43:08 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11697419..11697595 720..896 100 -> Minus
X 11697661..11697751 629..719 100 -> Minus
X 11698299..11698435 492..628 100 -> Minus
X 11698500..11698597 394..491 100 -> Minus
X 11699323..11699406 310..393 100 -> Minus
X 11703290..11703448 151..309 100 -> Minus
X 11703509..11703640 19..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:57 Download gff for BO08375.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11597542..11597673 19..150 100   Minus
arm_X 11591452..11591628 720..896 100 -> Minus
arm_X 11591694..11591784 629..719 100 -> Minus
arm_X 11592332..11592468 492..628 100 -> Minus
arm_X 11592533..11592630 394..491 100 -> Minus
arm_X 11593356..11593439 310..393 100 -> Minus
arm_X 11597323..11597481 151..309 100 -> Minus

BO08375.5prime Sequence

941 bp (820 high quality bases) assembled on 2006-01-06

> BO08375.5prime
GAAGTTATCAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCG
ACAAGGATGCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATT
CTGGGCAGGGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGAC
GGGCAAGGAGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGT
CAGGCGAGACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATC
TCAATACTGCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGA
TGTGTTCGAGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCA
AAGGTGAACTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAG
AAGACGCGCACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACA
CGCGAAGAGCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGG
ACGAGAACCACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTG
CAAGAGGGCGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGC
TCCCGAAACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGC
AGGAAGTCGACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTC
GGTTGTCCACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATAT
CATGGAGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAG
AGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAA
CGTATAACCGTCAAGGAAGTATTAAGACATCCATTCTTCAACCAAATGCT
GTTCGAGCAAAACATTGATGGGCTCAAGCGCAGCCTGTCGA

BO08375.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG1830-PB 1260 PhKgamma-RB 1..925 17..941 4600 99.8 Plus
CG1830-PC 1509 PhKgamma-RC 1..882 17..898 4410 100 Plus
CG1830-PA 1509 PhKgamma-RA 1..882 17..898 4410 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 512..1436 17..941 4610 99.9 Plus
PhKgamma-RB 2421 CG1830-RB 411..1335 17..941 4610 99.9 Plus
PhKgamma-RF 2232 CG1830-RF 306..1190 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697311..11697595 288..572 1425 100 Plus
X 23542271 X 11697063..11697244 106..287 910 100 Plus
X 23542271 X 11698299..11698435 664..800 685 100 Plus
X 23542271 X 11698493..11698597 794..898 510 99 Plus
X 23542271 X 11696449..11696541 17..109 465 100 Plus
X 23542271 X 11697661..11697751 573..663 455 100 Plus
X 23542271 X 11699322..11699365 898..941 205 97.7 Plus
Blast to na_te.dros performed 2015-02-11 14:28:56
Subject Length Description Subject Range Query Range Score Percent Strand
Helena 1317 Helena HEL 1317bp 923..968 363..318 113 71.7 Minus

BO08375.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:32 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:29 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1830-PB 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:08 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 407..1334 12..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:07 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 407..1334 12..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:07 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11698500..11698597 801..898 100 -> Plus
X 11699323..11699364 899..940 97   Plus
X 11696445..11696540 12..108 97 -> Plus
X 11697066..11697244 109..287 100 -> Plus
X 11697311..11697595 288..572 100 -> Plus
X 11697661..11697751 573..663 100 -> Plus
X 11698299..11698435 664..800 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:08 Download gff for BO08375.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11590478..11590573 12..108 97 -> Plus
arm_X 11591099..11591277 109..287 100 -> Plus
arm_X 11591344..11591628 288..572 100 -> Plus
arm_X 11591694..11591784 573..663 100 -> Plus
arm_X 11592332..11592468 664..800 100 -> Plus
arm_X 11592533..11592630 801..898 100 -> Plus
arm_X 11593356..11593397 899..940 97   Plus

BO08375.complete Sequence

1291 bp (1291 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631170

> BO08375.complete
GAAGTTATCAGTCGACATGGCCAAGGACGAGGAGGATGATCTGCTGCCCG
ACAAGGATGCGGCCAAGGGCTTCTATGCCAAATACGAGCCCAAGGAGATT
CTGGGCAGGGGCATCAGTTCGACCGTGAGGCGATGTATCGAAAAGGAGAC
GGGCAAGGAGTTTGCCGCCAAGATCATCGACTTGGGCGCCACCACAGAGT
CAGGCGAGACGAATCCATATCACATGCTGGAAGCAACCAGACAAGAAATC
TCAATACTGCGCCAGGTCATGGGGCATCCCTACATAATTGATCTGCAGGA
TGTGTTCGAGTCAGATGCATTTGTTTTCCTCGTCTTCGAGCTGTGTCCCA
AAGGTGAACTCTTCGACTATCTGACCTCTGTGGTGACGCTATCCGAGAAG
AAGACGCGCACCATTATGCGACAAATCTTTGAGGGCGTCGAGTACATACA
CGCGAAGAGCATTGTCCATCGGGATCTTAAGCCCGAGAATATCTTGCTGG
ACGAGAACCACAACGTTAAGATCACGGATTTTGGCTTCGCCAAGCAGTTG
CAAGAGGGCGAGAAACTTACAAATCTGTGCGGAACGCCGGGTTATTTGGC
TCCCGAAACGCTCAAGTGCAACATGTTCGAGGGATCCCCCGGCTACTCGC
AGGAAGTCGACATATGGGCCTGTGGCGTGATTATGTTTACGCTGCTCGTC
GGTTGTCCACCTTTCTGGCACCGCAAGCAGATGGTCATGCTGCGGAATAT
CATGGAGGGCAAGTACAGCTTCACCTCGCCGGAGTGGGCTGATATTTCAG
AGGATCCCAAGGATCTGATACGCAAATGTCTAGTCGTTGATCCTTCGCAA
CGTATAACCGTCAAGGAAGTATTAAGACATCCATTCTTCAACCAAATGCT
GTTCGAGCAAAACATTGATGGCCTCAAGCGCAGCCTGTCGACCAAGTCCC
GACGAATGAGTCGCATCACTGAGATCGCACTGCTGCGCAAACAAAGTCGC
TTCAACGCGCGCAAAAAGTTCCAATTCGCCATACTCGTGATACGGGCCAT
CATTCGGATACGGCGCCTACGCTTCACCGCCGAGCCGCTGCACGTTGAGG
AGGCCATCCGGGATCCGTATCGCGTCAAGGTTCTGCGCAAGGTCATCGAT
GGCTGTGCCTTCCGTGTCTACGGGCATTGGGTCAAGAAGGGTGAGGGCCA
GAATCGGGCCGCCCTCTTCGAGAATACTCCCCGCACGGAGCTCCACGCGC
TCTACATCAACAATCTCAGCCGAGCAAGCTTTCTAGACCAT

BO08375.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:36:28
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 1260 CG1830-PH 1..1257 17..1273 6285 100 Plus
PhKgamma-RB 1260 CG1830-PB 1..1257 17..1273 6285 100 Plus
PhKgamma-RF 1176 CG1830-PF 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:36:29
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-RH 2522 CG1830-RH 512..1768 17..1273 6285 100 Plus
PhKgamma-RB 2421 CG1830-RB 411..1667 17..1273 6285 100 Plus
PhKgamma-RF 2232 CG1830-RF 306..1190 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11697311..11697595 288..572 1425 100 Plus
X 23542271 X 11697063..11697244 106..287 910 100 Plus
X 23542271 X 11703289..11703450 982..1143 810 100 Plus
X 23542271 X 11698299..11698435 664..800 685 100 Plus
X 23542271 X 11703507..11703640 1140..1273 670 100 Plus
X 23542271 X 11698493..11698597 794..898 510 99 Plus
X 23542271 X 11696449..11696541 17..109 465 100 Plus
X 23542271 X 11697661..11697751 573..663 455 100 Plus
X 23542271 X 11699322..11699406 898..982 425 100 Plus
Blast to na_te.dros performed 2014-11-27 13:36:26
Subject Length Description Subject Range Query Range Score Percent Strand
Dm88 4558 Dm88 DM88 4558bp 2847..2898 1141..1192 116 69.2 Plus
Helena 1317 Helena HEL 1317bp 923..968 363..318 113 71.7 Minus

BO08375.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:17 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 1..1260 17..1274 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:37 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 413..1673 12..1273 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:31:02 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 411..1667 17..1275 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:17 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 413..1673 12..1273 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:19 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
PhKgamma-RB 411..1667 17..1275 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:19 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
X 11696449..11696540 17..108 100 -> Plus
X 11697066..11697244 109..287 100 -> Plus
X 11697311..11697595 288..572 100 -> Plus
X 11697661..11697751 573..663 100 -> Plus
X 11698299..11698435 664..800 100 -> Plus
X 11698500..11698597 801..898 100 -> Plus
X 11699323..11699406 899..982 100 -> Plus
X 11703290..11703448 983..1141 100 -> Plus
X 11703509..11703640 1142..1275 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:31:02 Download gff for BO08375.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11590482..11590573 17..108 100 -> Plus
arm_X 11591099..11591277 109..287 100 -> Plus
arm_X 11591344..11591628 288..572 100 -> Plus
arm_X 11591694..11591784 573..663 100 -> Plus
arm_X 11592332..11592468 664..800 100 -> Plus
arm_X 11592533..11592630 801..898 100 -> Plus
arm_X 11593356..11593439 899..982 100 -> Plus
arm_X 11597323..11597481 983..1141 100 -> Plus
arm_X 11597542..11597673 1142..1275 98   Plus

BO08375.pep Sequence

Translation from 16 to 1291

> BO08375.pep
MAKDEEDDLLPDKDAAKGFYAKYEPKEILGRGISSTVRRCIEKETGKEFA
AKIIDLGATTESGETNPYHMLEATRQEISILRQVMGHPYIIDLQDVFESD
AFVFLVFELCPKGELFDYLTSVVTLSEKKTRTIMRQIFEGVEYIHAKSIV
HRDLKPENILLDENHNVKITDFGFAKQLQEGEKLTNLCGTPGYLAPETLK
CNMFEGSPGYSQEVDIWACGVIMFTLLVGCPPFWHRKQMVMLRNIMEGKY
SFTSPEWADISEDPKDLIRKCLVVDPSQRITVKEVLRHPFFNQMLFEQNI
DGLKRSLSTKSRRMSRITEIALLRKQSRFNARKKFQFAILVIRAIIRIRR
LRFTAEPLHVEEAIRDPYRVKVLRKVIDGCAFRVYGHWVKKGEGQNRAAL
FENTPRTELHALYINNLSRASFLDH

BO08375.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:23
Subject Length Description Subject Range Query Range Score Percent Strand
PhKgamma-PH 419 CG1830-PH 1..419 1..419 2182 100 Plus
PhKgamma-PB 419 CG1830-PB 1..419 1..419 2182 100 Plus
PhKgamma-PF 391 CG1830-PF 1..391 1..419 2011 93.3 Plus
PhKgamma-PE 560 CG1830-PE 1..295 1..295 1553 99.7 Plus
PhKgamma-PD 560 CG1830-PD 1..295 1..295 1553 99.7 Plus
PhKgamma-PE 560 CG1830-PE 464..560 323..419 498 100 Plus