Clone Sequence Records
BO08376.5prime Sequence
398 bp (397 high quality bases) assembled on 2006-01-06
> BO08376.5prime
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGGCAAGCTTTCTAGACC
BO08376.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18285-PA | 723 | igl-RA | 354..720 | 16..382 | 1835 | 100 | Plus |
CG18285-PB | 369 | igl-RB | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1400 | 16..382 | 1835 | 100 | Plus |
igl-RB | 1916 | CG18285-RB | 237..603 | 16..382 | 1835 | 100 | Plus |
igl-RA | 2514 | CG18285-RA | 835..1201 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188979 | 158..382 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 15180568..15180710 | 16..158 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:45:23 has no hits.
BO08376.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:34 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-PA | 354..723 | 16..386 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:31 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18285-PA | 354..723 | 16..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:28:01 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1205 | 16..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:46 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1205 | 16..387 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:46 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180568..15180710 | 16..158 | 100 | -> | Plus |
2R | 15188756..15188983 | 159..387 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:28:01 Download gff for
BO08376.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068073..11068215 | 16..158 | 100 | -> | Plus |
arm_2R | 11076261..11076488 | 159..387 | 99 | | Plus |
BO08376.3prime Sequence
398 bp (397 high quality bases) assembled on 2006-01-06
> BO08376.3prime
ATGGTCTAGAAAGCTTGCCTCGGGATTGGCATCCTTGCGGGTCTTGTGGC
CCCGGAACGAGGCCTGAATTTTGGTAGCAGCCTTGTTAAGCTCGGGATCG
GTTAAATCTATGTCCAACTCCTCGGCCACCTTCTTGGTTATCTCCTGAAT
GTCCTCGTCCTCGGGCGCATCCTTGTTCACCAGCTTGCGTGCCAAATGAC
CACGGAAAGTGGACTGAATCTTCAATGCAGCATGGCACAGATCCTTGTCG
TTGGGATCGAATTCAGCCTCTAGCTCGGCTTTGGTTGGCTCTGCGGATGC
GGCTGCCTCGGCGGCTGCTGCCGATGGAGCTGCTCCGGCGGCACTGCCGT
TGTTGGTCGCAGTTTTGGTTTCCGATTTTTTCATGTCGACTGATAACT
BO08376.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18285-PA | 723 | igl-RA | 354..720 | 385..19 | 1835 | 100 | Minus |
CG18285-PB | 369 | igl-RB | 1..366 | 384..19 | 1830 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:27:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1400 | 385..19 | 1835 | 100 | Minus |
igl-RB | 1916 | CG18285-RB | 237..603 | 385..19 | 1835 | 100 | Minus |
igl-RA | 2514 | CG18285-RA | 835..1201 | 385..19 | 1835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:27:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188979 | 243..19 | 1125 | 100 | Minus |
2R | 25286936 | 2R | 15180568..15180710 | 385..243 | 715 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 16:27:13 has no hits.
BO08376.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:33 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-PA | 354..723 | 15..385 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:30 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18285-PA | 354..723 | 15..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:00 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1205 | 14..385 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:25 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 835..1205 | 14..385 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:25 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180568..15180710 | 243..385 | 100 | -> | Minus |
2R | 15188756..15188983 | 14..242 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:00 Download gff for
BO08376.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068073..11068215 | 243..385 | 100 | -> | Minus |
arm_2R | 11076261..11076488 | 14..242 | 99 | | Minus |
BO08376.complete Sequence
400 bp (400 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631171
> BO08376.complete
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGGCAAGCTTTCTAGACCAT
BO08376.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RA | 723 | CG18285-PA | 354..720 | 16..382 | 1835 | 100 | Plus |
igl-RC | 369 | CG18285-PC | 1..366 | 17..382 | 1830 | 100 | Plus |
igl-RB | 369 | CG18285-PB | 1..366 | 17..382 | 1830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-RC | 2713 | CG18285-RC | 1034..1400 | 16..382 | 1835 | 100 | Plus |
igl-RB | 1916 | CG18285-RB | 237..603 | 16..382 | 1835 | 100 | Plus |
igl-RA | 2514 | CG18285-RA | 835..1201 | 16..382 | 1835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 15188755..15188979 | 158..382 | 1125 | 100 | Plus |
2R | 25286936 | 2R | 15180568..15180710 | 16..158 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:19:39 has no hits.
BO08376.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:18 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 354..723 | 16..386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:41 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 833..1203 | 16..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:25 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 836..1201 | 17..384 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:19 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 833..1203 | 16..387 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:58 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
igl-RA | 836..1201 | 17..384 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:58 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 15180569..15180710 | 17..158 | 100 | -> | Plus |
2R | 15188756..15188979 | 159..384 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:25 Download gff for
BO08376.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11068074..11068215 | 17..158 | 100 | -> | Plus |
arm_2R | 11076261..11076484 | 159..384 | 99 | | Plus |
BO08376.pep Sequence
Translation from 16 to 400
> BO08376.pep
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPEASFLDH
BO08376.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
igl-PC | 122 | CG18285-PC | 1..122 | 1..122 | 613 | 100 | Plus |
igl-PB | 122 | CG18285-PB | 1..122 | 1..122 | 613 | 100 | Plus |
igl-PA | 240 | CG18285-PA | 119..240 | 1..122 | 613 | 100 | Plus |