Clone BO08376 Report

Search the DGRC for BO08376

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptigl-RB
Protein status:BO08376.pep: validated not full length
Sequenced Size:400

Clone Sequence Records

BO08376.5prime Sequence

398 bp (397 high quality bases) assembled on 2006-01-06

> BO08376.5prime
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGGCAAGCTTTCTAGACC

BO08376.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG18285-PA 723 igl-RA 354..720 16..382 1835 100 Plus
CG18285-PB 369 igl-RB 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:45:27
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1400 16..382 1835 100 Plus
igl-RB 1916 CG18285-RB 237..603 16..382 1835 100 Plus
igl-RA 2514 CG18285-RA 835..1201 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:45:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188979 158..382 1125 100 Plus
2R 25286936 2R 15180568..15180710 16..158 715 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:45:23 has no hits.

BO08376.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:34 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-PA 354..723 16..386 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:31 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18285-PA 354..723 16..386 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:28:01 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1205 16..387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:59:46 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1205 16..387 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:59:46 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 15180568..15180710 16..158 100 -> Plus
2R 15188756..15188983 159..387 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:28:01 Download gff for BO08376.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068073..11068215 16..158 100 -> Plus
arm_2R 11076261..11076488 159..387 99   Plus

BO08376.3prime Sequence

398 bp (397 high quality bases) assembled on 2006-01-06

> BO08376.3prime
ATGGTCTAGAAAGCTTGCCTCGGGATTGGCATCCTTGCGGGTCTTGTGGC
CCCGGAACGAGGCCTGAATTTTGGTAGCAGCCTTGTTAAGCTCGGGATCG
GTTAAATCTATGTCCAACTCCTCGGCCACCTTCTTGGTTATCTCCTGAAT
GTCCTCGTCCTCGGGCGCATCCTTGTTCACCAGCTTGCGTGCCAAATGAC
CACGGAAAGTGGACTGAATCTTCAATGCAGCATGGCACAGATCCTTGTCG
TTGGGATCGAATTCAGCCTCTAGCTCGGCTTTGGTTGGCTCTGCGGATGC
GGCTGCCTCGGCGGCTGCTGCCGATGGAGCTGCTCCGGCGGCACTGCCGT
TGTTGGTCGCAGTTTTGGTTTCCGATTTTTTCATGTCGACTGATAACT

BO08376.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18285-PA 723 igl-RA 354..720 385..19 1835 100 Minus
CG18285-PB 369 igl-RB 1..366 384..19 1830 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:27:17
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1400 385..19 1835 100 Minus
igl-RB 1916 CG18285-RB 237..603 385..19 1835 100 Minus
igl-RA 2514 CG18285-RA 835..1201 385..19 1835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:27:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188979 243..19 1125 100 Minus
2R 25286936 2R 15180568..15180710 385..243 715 100 Minus
Blast to na_te.dros performed on 2015-01-31 16:27:13 has no hits.

BO08376.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:33 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-PA 354..723 15..385 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:30 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18285-PA 354..723 15..385 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:24:00 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1205 14..385 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:42:25 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
igl-RA 835..1205 14..385 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:42:25 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 15180568..15180710 243..385 100 -> Minus
2R 15188756..15188983 14..242 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:24:00 Download gff for BO08376.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068073..11068215 243..385 100 -> Minus
arm_2R 11076261..11076488 14..242 99   Minus

BO08376.complete Sequence

400 bp (400 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631171

> BO08376.complete
GAAGTTATCAGTCGACATGAAAAAATCGGAAACCAAAACTGCGACCAACA
ACGGCAGTGCCGCCGGAGCAGCTCCATCGGCAGCAGCCGCCGAGGCAGCC
GCATCCGCAGAGCCAACCAAAGCCGAGCTAGAGGCTGAATTCGATCCCAA
CGACAAGGATCTGTGCCATGCTGCATTGAAGATTCAGTCCACTTTCCGTG
GTCATTTGGCACGCAAGCTGGTGAACAAGGATGCGCCCGAGGACGAGGAC
ATTCAGGAGATAACCAAGAAGGTGGCCGAGGAGTTGGACATAGATTTAAC
CGATCCCGAGCTTAACAAGGCTGCTACCAAAATTCAGGCCTCGTTCCGGG
GCCACAAGACCCGCAAGGATGCCAATCCCGAGGCAAGCTTTCTAGACCAT

BO08376.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:19:39
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RA 723 CG18285-PA 354..720 16..382 1835 100 Plus
igl-RC 369 CG18285-PC 1..366 17..382 1830 100 Plus
igl-RB 369 CG18285-PB 1..366 17..382 1830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:19:40
Subject Length Description Subject Range Query Range Score Percent Strand
igl-RC 2713 CG18285-RC 1034..1400 16..382 1835 100 Plus
igl-RB 1916 CG18285-RB 237..603 16..382 1835 100 Plus
igl-RA 2514 CG18285-RA 835..1201 16..382 1835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 15188755..15188979 158..382 1125 100 Plus
2R 25286936 2R 15180568..15180710 16..158 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:19:39 has no hits.

BO08376.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:18 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 354..723 16..386 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:41 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 833..1203 16..387 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:46:25 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 836..1201 17..384 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:19 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 833..1203 16..387 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:50:58 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
igl-RA 836..1201 17..384 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:50:58 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
2R 15180569..15180710 17..158 100 -> Plus
2R 15188756..15188979 159..384 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:46:25 Download gff for BO08376.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11068074..11068215 17..158 100 -> Plus
arm_2R 11076261..11076484 159..384 99   Plus

BO08376.pep Sequence

Translation from 16 to 400

> BO08376.pep
MKKSETKTATNNGSAAGAAPSAAAAEAAASAEPTKAELEAEFDPNDKDLC
HAALKIQSTFRGHLARKLVNKDAPEDEDIQEITKKVAEELDIDLTDPELN
KAATKIQASFRGHKTRKDANPEASFLDH

BO08376.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:39:06
Subject Length Description Subject Range Query Range Score Percent Strand
igl-PC 122 CG18285-PC 1..122 1..122 613 100 Plus
igl-PB 122 CG18285-PB 1..122 1..122 613 100 Plus
igl-PA 240 CG18285-PA 119..240 1..122 613 100 Plus