Clone Sequence Records
BO08381.3prime Sequence
891 bp (776 high quality bases) assembled on 2006-01-06
> BO08381.3prime
ATGGTCTAGAAAGCTTGCATTGCTGACGCGCTTTGCATGCAGTTGCATAC
GTTTCTCGATCTCGGGCCGGAAGTGACGAATGAGGCCCTGGACTGGCCAG
GCGGCACCATCACCAAGCGCACAAATAGTGTGTCCCTCAATTTGTTTGGA
AATCTCCCACAGCATATCGATCTCAGCGGGCTGGGCGTCACCCTTAACAA
ATCGAGTCATGATTTTGTTCATCCAACCGATTCCCTCTCGGCATGGCGTG
CACTGGCCACAGCTCTCATGCTTATAGAATGAAATTAGCCTGGCAATAGC
CTTTATCACATCCGTCGACTTGTCCATTACGATGATAGCCGCAGTACCCA
GCGAAGTCTGAGCGGCAATTAGGCCATCGAAGTCCATGATAACATCGTCG
CAGACATTTTTGGGTATGATGGGGGTGGAAGAGCCGCCGGGAATGACGCC
TAGCAGATTATCCCATCCACCAGTGACGCCTCCGCAGTGGCGCTCAATCA
ACTCCTTGAGTGGGATGGACATTTCCTCCTCCACAGTGCAGGGCCTGTTG
ACATGTCCCGAAATGTTGAAGAGCTTGGTGCCCGAGTTACGGGTGCGACC
GAAGCTGGCGAACCATACACCGCCACGACGGCAAATGGTTGGTGCAACGG
CCACGGTCTCCACATTGGTAACTGTGGTTGGGCAACCGAACACACCCACA
TCAGCTGGGAATGGCGGCTTCAAGCGTGGCTTTCCCTGCTTTCCTTCCAG
CGATTCGATCAGAGCGGTCTCCTCGCCGCAAATGTAAGCTCCAGCGCCGC
GGTGCATGAAGACGTCGAAGTCGTAGCCAGTTCCGCACGCATTCTTTTCA
ATCAGACCAGCCTGGTATGCCTCGGCAATGGCCAGTTGCAT
BO08381.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PA | 1425 | CG9140-RA | 550..1422 | 891..19 | 4290 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 583..1455 | 891..19 | 4320 | 99.7 | Minus |
CG9140-RA | 1590 | CG9140-RA | 620..1492 | 891..19 | 4320 | 99.7 | Minus |
CG11423-RA | 2143 | CG11423-RA | 1235..2027 | 847..55 | 520 | 71.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061187..6061875 | 203..891 | 3400 | 99.6 | Plus |
2L | 23513712 | 2L | 6060940..6061124 | 19..203 | 925 | 100 | Plus |
2R | 25286936 | 2R | 17596501..17597293 | 847..55 | 470 | 70.6 | Minus |
Blast to na_te.dros performed 2015-02-10 19:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 5849..5945 | 336..238 | 129 | 61.6 | Minus |
BO08381.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:42 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 550..1425 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:45 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 550..1425 | 15..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:42 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 620..1496 | 14..891 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:11 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 620..1496 | 14..891 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:11 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6060936..6061123 | 14..202 | 98 | <- | Plus |
2L | 6061187..6061875 | 203..891 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:42 Download gff for
BO08381.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6060936..6061123 | 14..202 | 98 | <- | Plus |
arm_2L | 6061187..6061875 | 203..891 | 99 | | Plus |
BO08381.5prime Sequence
935 bp (877 high quality bases) assembled on 2006-01-06
> BO08381.5prime
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTTCACATTTTCGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAA
BO08381.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PA | 1425 | CG9140-RA | 1..919 | 17..935 | 4420 | 99.2 | Plus |
CG11423-PA | 2109 | CG11423-RA | 1007..1109 | 399..501 | 165 | 86.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 34..952 | 17..935 | 4490 | 99.2 | Plus |
CG9140-RA | 1590 | CG9140-RA | 71..989 | 17..935 | 4490 | 99.2 | Plus |
CG11423-RA | 2143 | CG11423-RA | 741..1514 | 116..889 | 935 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061506..6062022 | 935..419 | 2495 | 98.8 | Minus |
2L | 23513712 | 2L | 6062074..6062436 | 424..62 | 1785 | 99.4 | Minus |
2R | 25286936 | 2R | 17596007..17596780 | 116..889 | 930 | 74.7 | Plus |
2L | 23513712 | 2L | 6062642..6062687 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:28:49 has no hits.
BO08381.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:43 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:46 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-PA | 1..916 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:04 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..986 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:02 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..986 | 17..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:02 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6061509..6062021 | 420..932 | 98 | <- | Minus |
2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
2L | 6062642..6062687 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:04 Download gff for
BO08381.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6061509..6062021 | 420..932 | 98 | <- | Minus |
arm_2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
arm_2L | 6062642..6062687 | 17..62 | 100 | | Minus |
BO08381.complete Sequence
1456 bp (1456 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631172
> BO08381.complete
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCA
AGGAGTTGATTGAGCGCCACTGCGGAGGCGTCACTGGTGGATGGGATAAT
CTGCTAGGCGTCATTCCCGGCGGCTCTTCCACCCCCATCATACCCAAAAA
TGTCTGCGACGATGTTATCATGGACTTCGATGGCCTAATTGCCGCTCAGA
CTTCGCTGGGTACTGCGGCTATCATCGTAATGGACAAGTCGACGGATGTG
ATAAAGGCTATTGCCAGGCTAATTTCATTCTATAAGCATGAGAGCTGTGG
CCAGTGCACGCCATGCCGAGAGGGAATCGGTTGGATGAACAAAATCATGA
CTCGATTTGTTAAGGGTGACGCCCAGCCCGCTGAGATCGATATGCTGTGG
GAGATTTCCAAACAAATTGAGGGACACACTATTTGTGCGCTTGGTGATGG
TGCCGCCTGGCCAGTCCAGGGCCTCATTCGTCACTTCCGGCCCGAGATCG
AGAAACGTATGCAACTGCATGCAAAGCGCGTCAGCAATGCAAGCTTTCTA
GACCAT
BO08381.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1425 | CG9140-PB | 1..1422 | 17..1438 | 7065 | 99.8 | Plus |
CG9140-RA | 1425 | CG9140-PA | 1..1422 | 17..1438 | 7065 | 99.8 | Plus |
CG11423-RA | 2109 | CG11423-PA | 724..2010 | 116..1402 | 1035 | 72 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-RB | 1553 | CG9140-RB | 34..1455 | 17..1438 | 7065 | 99.8 | Plus |
CG9140-RA | 1590 | CG9140-RA | 71..1492 | 17..1438 | 7065 | 99.8 | Plus |
CG11423-RA | 2143 | CG11423-RA | 741..2027 | 116..1402 | 1035 | 72 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6061187..6062022 | 1254..419 | 4150 | 99.8 | Minus |
2L | 23513712 | 2L | 6062074..6062436 | 424..62 | 1785 | 99.4 | Minus |
2R | 25286936 | 2R | 17596007..17597293 | 116..1402 | 1035 | 72 | Plus |
2L | 23513712 | 2L | 6060940..6061124 | 1438..1254 | 925 | 100 | Minus |
2L | 23513712 | 2L | 6062642..6062687 | 62..17 | 230 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 00:50:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Burdock | 6411 | Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). | 5849..5945 | 1121..1219 | 129 | 61.6 | Plus |
BO08381.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:07 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 1..1425 | 17..1442 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:25 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1496 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:39 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1492 | 17..1440 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:07 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1496 | 17..1443 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:01 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9140-RA | 71..1492 | 17..1440 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:01 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6060938..6061123 | 1255..1440 | 98 | <- | Minus |
2L | 6061187..6062021 | 420..1254 | 99 | <- | Minus |
2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
2L | 6062642..6062687 | 17..62 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:39 Download gff for
BO08381.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6060938..6061123 | 1255..1440 | 98 | <- | Minus |
arm_2L | 6061187..6062021 | 420..1254 | 99 | <- | Minus |
arm_2L | 6062079..6062435 | 63..419 | 99 | <- | Minus |
arm_2L | 6062642..6062687 | 17..62 | 100 | | Minus |
BO08381.pep Sequence
Translation from 16 to 1456
> BO08381.pep
MAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKFGPL
ADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGL
RGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDP
HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKN
ACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGV
FGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRP
CTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV
IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPC
REGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPV
QGLIRHFRPEIEKRMQLHAKRVSNASFLDH
BO08381.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9140-PB | 474 | CG9140-PB | 1..474 | 1..474 | 2544 | 100 | Plus |
CG9140-PA | 474 | CG9140-PA | 1..474 | 1..474 | 2544 | 100 | Plus |
CG11423-PA | 702 | CG11423-PA | 240..677 | 32..469 | 1934 | 79.7 | Plus |
CG8102-PA | 481 | CG8102-PA | 43..479 | 35..470 | 1228 | 52.7 | Plus |
CG8102-PB | 462 | CG8102-PB | 43..460 | 35..470 | 1127 | 49.8 | Plus |