Clone BO08381 Report

Search the DGRC for BO08381

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:81
Vector:pDNR-Dual
Associated Gene/TranscriptCG9140-RA
Protein status:BO08381.pep: validated full length
Sequenced Size:1456

Clone Sequence Records

BO08381.3prime Sequence

891 bp (776 high quality bases) assembled on 2006-01-06

> BO08381.3prime
ATGGTCTAGAAAGCTTGCATTGCTGACGCGCTTTGCATGCAGTTGCATAC
GTTTCTCGATCTCGGGCCGGAAGTGACGAATGAGGCCCTGGACTGGCCAG
GCGGCACCATCACCAAGCGCACAAATAGTGTGTCCCTCAATTTGTTTGGA
AATCTCCCACAGCATATCGATCTCAGCGGGCTGGGCGTCACCCTTAACAA
ATCGAGTCATGATTTTGTTCATCCAACCGATTCCCTCTCGGCATGGCGTG
CACTGGCCACAGCTCTCATGCTTATAGAATGAAATTAGCCTGGCAATAGC
CTTTATCACATCCGTCGACTTGTCCATTACGATGATAGCCGCAGTACCCA
GCGAAGTCTGAGCGGCAATTAGGCCATCGAAGTCCATGATAACATCGTCG
CAGACATTTTTGGGTATGATGGGGGTGGAAGAGCCGCCGGGAATGACGCC
TAGCAGATTATCCCATCCACCAGTGACGCCTCCGCAGTGGCGCTCAATCA
ACTCCTTGAGTGGGATGGACATTTCCTCCTCCACAGTGCAGGGCCTGTTG
ACATGTCCCGAAATGTTGAAGAGCTTGGTGCCCGAGTTACGGGTGCGACC
GAAGCTGGCGAACCATACACCGCCACGACGGCAAATGGTTGGTGCAACGG
CCACGGTCTCCACATTGGTAACTGTGGTTGGGCAACCGAACACACCCACA
TCAGCTGGGAATGGCGGCTTCAAGCGTGGCTTTCCCTGCTTTCCTTCCAG
CGATTCGATCAGAGCGGTCTCCTCGCCGCAAATGTAAGCTCCAGCGCCGC
GGTGCATGAAGACGTCGAAGTCGTAGCCAGTTCCGCACGCATTCTTTTCA
ATCAGACCAGCCTGGTATGCCTCGGCAATGGCCAGTTGCAT

BO08381.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PA 1425 CG9140-RA 550..1422 891..19 4290 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:04:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 583..1455 891..19 4320 99.7 Minus
CG9140-RA 1590 CG9140-RA 620..1492 891..19 4320 99.7 Minus
CG11423-RA 2143 CG11423-RA 1235..2027 847..55 520 71.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6061875 203..891 3400 99.6 Plus
2L 23513712 2L 6060940..6061124 19..203 925 100 Plus
2R 25286936 2R 17596501..17597293 847..55 470 70.6 Minus
Blast to na_te.dros performed 2015-02-10 19:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5849..5945 336..238 129 61.6 Minus

BO08381.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:42 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 550..1425 15..891 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:45 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 550..1425 15..891 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:11:42 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 620..1496 14..891 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:11 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 620..1496 14..891 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:11 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 6060936..6061123 14..202 98 <- Plus
2L 6061187..6061875 203..891 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:11:42 Download gff for BO08381.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060936..6061123 14..202 98 <- Plus
arm_2L 6061187..6061875 203..891 99   Plus

BO08381.5prime Sequence

935 bp (877 high quality bases) assembled on 2006-01-06

> BO08381.5prime
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTTCACATTTTCGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAA

BO08381.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PA 1425 CG9140-RA 1..919 17..935 4420 99.2 Plus
CG11423-PA 2109 CG11423-RA 1007..1109 399..501 165 86.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 34..952 17..935 4490 99.2 Plus
CG9140-RA 1590 CG9140-RA 71..989 17..935 4490 99.2 Plus
CG11423-RA 2143 CG11423-RA 741..1514 116..889 935 75.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061506..6062022 935..419 2495 98.8 Minus
2L 23513712 2L 6062074..6062436 424..62 1785 99.4 Minus
2R 25286936 2R 17596007..17596780 116..889 930 74.7 Plus
2L 23513712 2L 6062642..6062687 62..17 230 100 Minus
Blast to na_te.dros performed on 2015-02-11 14:28:49 has no hits.

BO08381.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:43 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:39:46 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-PA 1..916 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:04 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..986 17..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:00:02 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..986 17..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:00:02 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 6061509..6062021 420..932 98 <- Minus
2L 6062079..6062435 63..419 99 <- Minus
2L 6062642..6062687 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:04 Download gff for BO08381.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6061509..6062021 420..932 98 <- Minus
arm_2L 6062079..6062435 63..419 99 <- Minus
arm_2L 6062642..6062687 17..62 100   Minus

BO08381.complete Sequence

1456 bp (1456 high quality bases) assembled on 2006-01-10

GenBank Submission: FJ631172

> BO08381.complete
GAAGTTATCAGTCGACATGGCTGCAATTGTGCGATTTAATTTGTTAACAA
AGCCGCAGATTGTTGCGACTTTGCCGGCCAGCCTGCATGTGCAGCGCTTC
CAGAGCACCCAGGCCCCACCTCCGGGCACTCCTCCGCCACAGACGAAGAC
CAAATTCGGTCCGCTGGCGGACGAAGATCGCATCTTCACCAACCTCTATG
GACGACATGACTGGAGGCTGAAGGGAGCTTTGAAGCGCGGCGACTGGTAC
AAAACCAAGGAGATTGTGCTGAAGGGGGCTGACTGGATCGTTAACGAGAT
CAAGACGTCCGGCCTGCGCGGACGTGGAGGAGCTGGCTTCCCCAGCGGTA
TGAAGTGGTCCTTCATGAACAAGCCCGGAGATGGACGCCCCAAGTACTTG
GTGGTGAATGCCGATGAGGGAGAGCCTGGCACCTGCAAGGATCGCGAGAT
CATGCGCCACGATCCACACAAGCTGGTGGAGGGCTGTCTGATTGCCGGAC
GCGCCATGGGCGCCCAGGCTGCCTACATCTACATTCGTGGCGAGTTCTAC
AACGAGGCTTCCAACATGCAACTGGCCATTGCCGAGGCATACCAGGCTGG
TCTGATTGGAAAGAATGCGTGCGGAACTGGCTACGACTTCGACGTCTTCA
TGCACCGCGGCGCTGGAGCTTACATTTGCGGCGAGGAGACCGCTCTGATC
GAATCGCTGGAAGGAAAGCAGGGAAAGCCACGCTTGAAGCCGCCATTCCC
AGCTGATGTGGGTGTGTTCGGTTGCCCAACCACAGTTACCAATGTGGAGA
CCGTGGCCGTTGCACCAACCATTTGCCGTCGTGGCGGTGTATGGTTCGCC
AGCTTCGGTCGCACCCGTAACTCGGGCACCAAGCTCTTCAACATTTCGGG
ACATGTCAACAGGCCCTGCACTGTGGAGGAGGAAATGTCCATCCCACTCA
AGGAGTTGATTGAGCGCCACTGCGGAGGCGTCACTGGTGGATGGGATAAT
CTGCTAGGCGTCATTCCCGGCGGCTCTTCCACCCCCATCATACCCAAAAA
TGTCTGCGACGATGTTATCATGGACTTCGATGGCCTAATTGCCGCTCAGA
CTTCGCTGGGTACTGCGGCTATCATCGTAATGGACAAGTCGACGGATGTG
ATAAAGGCTATTGCCAGGCTAATTTCATTCTATAAGCATGAGAGCTGTGG
CCAGTGCACGCCATGCCGAGAGGGAATCGGTTGGATGAACAAAATCATGA
CTCGATTTGTTAAGGGTGACGCCCAGCCCGCTGAGATCGATATGCTGTGG
GAGATTTCCAAACAAATTGAGGGACACACTATTTGTGCGCTTGGTGATGG
TGCCGCCTGGCCAGTCCAGGGCCTCATTCGTCACTTCCGGCCCGAGATCG
AGAAACGTATGCAACTGCATGCAAAGCGCGTCAGCAATGCAAGCTTTCTA
GACCAT

BO08381.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1425 CG9140-PB 1..1422 17..1438 7065 99.8 Plus
CG9140-RA 1425 CG9140-PA 1..1422 17..1438 7065 99.8 Plus
CG11423-RA 2109 CG11423-PA 724..2010 116..1402 1035 72 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-RB 1553 CG9140-RB 34..1455 17..1438 7065 99.8 Plus
CG9140-RA 1590 CG9140-RA 71..1492 17..1438 7065 99.8 Plus
CG11423-RA 2143 CG11423-RA 741..2027 116..1402 1035 72 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:50:45
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6061187..6062022 1254..419 4150 99.8 Minus
2L 23513712 2L 6062074..6062436 424..62 1785 99.4 Minus
2R 25286936 2R 17596007..17597293 116..1402 1035 72 Plus
2L 23513712 2L 6060940..6061124 1438..1254 925 100 Minus
2L 23513712 2L 6062642..6062687 62..17 230 100 Minus
Blast to na_te.dros performed 2014-11-28 00:50:46
Subject Length Description Subject Range Query Range Score Percent Strand
Burdock 6411 Burdock DMU89994 6411bp Derived from U89994 (g1905850) (Rel. 51, Last updated, Version 1). 5849..5945 1121..1219 129 61.6 Plus

BO08381.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:07 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 1..1425 17..1442 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:25 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1496 17..1443 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:32:39 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1492 17..1440 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:07 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1496 17..1443 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:39:01 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
CG9140-RA 71..1492 17..1440 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:39:01 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6060938..6061123 1255..1440 98 <- Minus
2L 6061187..6062021 420..1254 99 <- Minus
2L 6062079..6062435 63..419 99 <- Minus
2L 6062642..6062687 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:32:39 Download gff for BO08381.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6060938..6061123 1255..1440 98 <- Minus
arm_2L 6061187..6062021 420..1254 99 <- Minus
arm_2L 6062079..6062435 63..419 99 <- Minus
arm_2L 6062642..6062687 17..62 100   Minus

BO08381.pep Sequence

Translation from 16 to 1456

> BO08381.pep
MAAIVRFNLLTKPQIVATLPASLHVQRFQSTQAPPPGTPPPQTKTKFGPL
ADEDRIFTNLYGRHDWRLKGALKRGDWYKTKEIVLKGADWIVNEIKTSGL
RGRGGAGFPSGMKWSFMNKPGDGRPKYLVVNADEGEPGTCKDREIMRHDP
HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNMQLAIAEAYQAGLIGKN
ACGTGYDFDVFMHRGAGAYICGEETALIESLEGKQGKPRLKPPFPADVGV
FGCPTTVTNVETVAVAPTICRRGGVWFASFGRTRNSGTKLFNISGHVNRP
CTVEEEMSIPLKELIERHCGGVTGGWDNLLGVIPGGSSTPIIPKNVCDDV
IMDFDGLIAAQTSLGTAAIIVMDKSTDVIKAIARLISFYKHESCGQCTPC
REGIGWMNKIMTRFVKGDAQPAEIDMLWEISKQIEGHTICALGDGAAWPV
QGLIRHFRPEIEKRMQLHAKRVSNASFLDH

BO08381.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG9140-PB 474 CG9140-PB 1..474 1..474 2544 100 Plus
CG9140-PA 474 CG9140-PA 1..474 1..474 2544 100 Plus
CG11423-PA 702 CG11423-PA 240..677 32..469 1934 79.7 Plus
CG8102-PA 481 CG8102-PA 43..479 35..470 1228 52.7 Plus
CG8102-PB 462 CG8102-PB 43..460 35..470 1127 49.8 Plus