Clone Sequence Records
BO08387.3prime Sequence
942 bp (911 high quality bases) assembled on 2006-01-06
> BO08387.3prime
ATGGTCTAGAAAGCTTGCGTGCCTTTCCTTCAGCCGAATGTATAGACCAT
TTTCGGATTTCAGGGTCAGCACAGCGGAAAGAATAGGGTCGTATTTGTGA
CGGTATGGATCGCGCTTCTTCCTCTCGGCATCAGGGAGTCCAATAGTGGT
GCTTATATAGCCATCCTTAGAGACGAGCTCATCCAGAGCAGGAAGCACCT
CGAAGTTCCTAATGATCTTGGATACCACAGTCTTAATCTCCAGCAGGGCG
AACTTCTGACCAATGCAGTTTCGGGGTCCAGCGCTGAAGGGTACATACTC
AAAAGGTCCTGGTTTCTCCAGCTCAAAGCGCTCAGGTCGGAACTTGTGGG
GATCTTTGAACACCTTTTCGTTATAACCCAGCATCACGAGACCCAGGTTC
AGTGTGGTGCCCTTGGGTACGAGATCCCCATCTATAACATAGTCTTTCTC
CGTAAATCGTCCAATGAAAGGCACGCTGGGATAAACACGCTGGGCCTCCT
TGATAAAGAGATCCAAGTACTTCATTTGGGATATTTCCTGGAAGGTGGCA
TCGCGACCCAGTTCGGAATTACCCATTACTTCGCGTTGCTCCTTAAATAG
TTTGCGCTGTTCATCTTGATGTCTAGAAAGCAAATAGACAGCGAACGACA
CTCCAGAAGTGGTAGTATCATGTCCTTCAAACATAAATGTGGAGACCTCT
TCGTACAGTTCCTTGGAGTTCAGGGGACGACCATCAATAGTGGAGGACAG
CAGAGTGTCTAANAAGGCCATTTTCTTGCGAGTGAACTCATCTCCCGCGT
TGGTCGAAACTGCACCCGATTTGTGGGCTTCAATGCGCTTAGCGATGATC
TCGTTGGTAAAGTCCTGCAGTGTTTTTAGAGTCCTGCTATAGGCCGGGTA
GTCCGGAGCCAAACGATACAGCAGTTCATTGCGCTTCAGCGG
BO08387.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2060-PA | 1581 | Cyp4e2-RA | 655..1578 | 942..19 | 4601 | 99.8 | Minus |
CG2062-PA | 1596 | Cyp4e1-RA | 1279..1448 | 318..149 | 350 | 88.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:37:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 812..1735 | 942..19 | 4609 | 99.9 | Minus |
Cyp4e2-RA | 1783 | CG2060-RA | 715..1638 | 942..19 | 4609 | 99.9 | Minus |
Cyp4e1-RA | 1772 | CG2062-RA | 773..1504 | 876..145 | 1239 | 78.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8446601..8447019 | 437..19 | 2095 | 100 | Minus |
2R | 25286936 | 2R | 8445976..8446311 | 942..607 | 1669 | 99.7 | Minus |
2R | 25286936 | 2R | 8446370..8446546 | 608..432 | 885 | 100 | Minus |
2R | 25286936 | 2R | 8449188..8449477 | 434..145 | 595 | 80.3 | Minus |
2R | 25286936 | 2R | 8448714..8448896 | 789..607 | 364 | 79.8 | Minus |
2L | 23513712 | 2L | 9748021..9748416 | 22..417 | 315 | 72 | Plus |
2R | 25286936 | 2R | 8448965..8449128 | 603..440 | 310 | 79.3 | Minus |
2L | 23513712 | 2L | 9748729..9748888 | 618..777 | 279 | 78.1 | Plus |
2L | 23513712 | 2L | 9748513..9748600 | 456..543 | 200 | 81.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:37:47 has no hits.
BO08387.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:53 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 655..1581 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:02 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 655..1581 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:44:10 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 715..1641 | 15..942 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:17:21 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 715..1641 | 15..942 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:17:21 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8445976..8446311 | 607..942 | 99 | -> | Minus |
2R | 8446372..8446546 | 432..606 | 100 | -> | Minus |
2R | 8446607..8447022 | 15..431 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:44:10 Download gff for
BO08387.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4333481..4333816 | 607..942 | 99 | -> | Minus |
arm_2R | 4333877..4334051 | 432..606 | 100 | -> | Minus |
arm_2R | 4334112..4334527 | 15..431 | 99 | | Minus |
BO08387.5prime Sequence
896 bp (842 high quality bases) assembled on 2006-01-06
> BO08387.5prime
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCANGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACT
BO08387.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2060-PA | 1581 | Cyp4e2-RA | 1..880 | 17..896 | 4381 | 99.8 | Plus |
CG2062-PA | 1596 | Cyp4e1-RA | 325..461 | 341..477 | 460 | 93.4 | Plus |
CG4105-PA | 1581 | Cyp4e3-RA | 367..464 | 383..480 | 390 | 95.9 | Plus |
CG2062-PA | 1596 | Cyp4e1-RA | 526..590 | 542..606 | 225 | 93.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:12:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 158..1037 | 17..896 | 4389 | 99.9 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 61..940 | 17..896 | 4389 | 99.9 | Plus |
Cyp4e1-RA | 1772 | CG2062-RA | 167..929 | 131..893 | 1184 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:12:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8445534..8445883 | 287..636 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 8445942..8446201 | 637..896 | 1289 | 99.6 | Plus |
2R | 25286936 | 2R | 8448106..8448452 | 290..636 | 940 | 84.7 | Plus |
2R | 25286936 | 2R | 8444771..8444930 | 17..176 | 800 | 100 | Plus |
2L | 23513712 | 2L | 9749150..9749427 | 636..359 | 595 | 80.9 | Minus |
2R | 25286936 | 2R | 8445356..8445467 | 175..286 | 560 | 100 | Plus |
2R | 25286936 | 2R | 8448714..8448783 | 824..893 | 185 | 84.3 | Plus |
Blast to na_te.dros performed on 2015-02-12 20:12:16 has no hits.
BO08387.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:45:53 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:03 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2060-PA | 1..880 | 17..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:25:14 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 55..940 | 12..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:30:12 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 55..940 | 12..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:30:12 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8444765..8444930 | 12..176 | 98 | -> | Plus |
2R | 8445358..8445467 | 177..286 | 100 | -> | Plus |
2R | 8445534..8445883 | 287..636 | 100 | -> | Plus |
2R | 8445942..8446201 | 637..896 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:25:14 Download gff for
BO08387.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4332270..4332435 | 12..176 | 98 | -> | Plus |
arm_2R | 4332863..4332972 | 177..286 | 100 | -> | Plus |
arm_2R | 4333039..4333388 | 287..636 | 100 | -> | Plus |
arm_2R | 4333447..4333706 | 637..896 | 99 | | Plus |
BO08387.complete Sequence
1612 bp (1612 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631173
> BO08387.complete
GAAGTTATCAGTCGACATGTGGTTCGTGTTGTATATTTTTCTGGCCCTAC
CACTGCTGCTGGTTGCATATCTGGAGTTGAGCACATTCCGCCGGAGAAGA
GTGCTTAACAAGTTCAACGGCCCCCGCGGCCTGCCGCTGATGGGAAACGC
TCATCAAATGGGCAAGAATCCGTCAGAAATACTCGACACGGTTTTCTCCT
GGTGGCATCAGTATGGAAAAGACAACTTCGTCTTTTGGATTGGAACGTAT
TCTAATGTATTGGTCACCAGCTCCAAGTACCTTGAATTCATACTCAGCAG
TCAGACGCTGATCACAAAGTCCGACATTTATCAACTAACACACCCTTGGC
TGGGATTAGGTCTCCTCACCAGTACTGGCAGCAAATGGCATAAACACCGC
AAGATGATCACCCCAGCATTCCACTTCAACATCCTGCAGGACTTCCACGA
GGTGATGAACGAGAACTCCACCAAGTTTATCAAGCACTTAAAGACAGTTG
CTGCCGGGGACAATATATTCGACTTCCAAGAACAGGCCCACTATTTGACC
CTGGATGTCATTTGCGACACAGCGATGGGTGTGTCCATCAATGCCATGGA
AAACCGCAGCTCTTCCATTGTGCAGGCCTTCAAAGACATGTGCTACAACA
TCAACATGAGAGCCTTCCACCCGCTGAAGCGCAATGAACTGCTGTATCGT
TTGGCTCCGGACTACCCGGCCTATAGCAGGACTCTAAAAACACTGCAGGA
CTTTACCAACGAGATCATCGCTAAGCGCATTGAAGCCCACAAATCGGGTG
CAGTTTCGACCAACGCGGGAGATGAGTTCACTCGCAAGAAAATGGCCTTT
TTAGACACTCTGCTGTCCTCCACTATTGATGGTCGTCCCCTGAACTCCAA
GGAACTGTACGAAGAGGTCTCCACATTTATGTTTGAAGGACATGATACTA
CCACTTCTGGAGTGTCGTTCGCTGTCTATTTGCTTTCTAGACATCAAGAT
GAACAGCGCAAACTATTTAAGGAGCAACGCGAAGTAATGGGTAATTCCGA
ACTGGGTCGCGATGCCACCTTCCAGGAAATATCCCAAATGAAGTACTTGG
ATCTCTTTATCAAGGAGGCCCAGCGTGTTTATCCCAGCGTGCCTTTCATT
GGACGATTTACGGAGAAAGACTATGTTATAGATGGGGATCTCGTACCCAA
GGGCACCACACTGAACCTGGGTCTCGTGATGCTGGGTTATAACGAAAAGG
TGTTCAAAGATCCCCACAAGTTCCGACCTGAGCGCTTTGAGCTGGAGAAA
CCAGGACCTTTTGAGTATGTACCCTTCAGCGCTGGACCCCGAAACTGCAT
TGGTCAGAAGTTCGCCCTGCTGGAGATTAAGACTGTGGTATCCAAGATCA
TTAGGAACTTCGAGGTGCTTCCTGCTCTGGATGAGCTCGTCTCTAAGGAT
GGCTATATAAGCACCACTATTGGACTCCCTGATGCCGAGAGGAAGAAGCG
CGATCCATACCGTCACAAATACGACCCTATTCTTTCCGCTGTGCTGACCC
TGAAATCCGAAAATGGTCTATACATTCGGCTGAAGGAAAGGCACGCAAGC
TTTCTAGACCAT
BO08387.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:00:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1581 | CG2060-PB | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Cyp4e2-RA | 1581 | CG2060-PA | 1..1578 | 17..1594 | 7890 | 100 | Plus |
Cyp4e1-RA | 1596 | CG2062-PA | 115..1452 | 131..1468 | 2175 | 77.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:00:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-RB | 1880 | CG2060-RB | 158..1735 | 17..1594 | 7890 | 100 | Plus |
Cyp4e2-RA | 1783 | CG2060-RA | 61..1638 | 17..1594 | 7890 | 100 | Plus |
Cyp4e1-RA | 1772 | CG2062-RA | 167..1504 | 131..1468 | 2175 | 77.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8446601..8447019 | 1176..1594 | 2095 | 100 | Plus |
2R | 25286936 | 2R | 8445942..8446311 | 637..1006 | 1850 | 100 | Plus |
2R | 25286936 | 2R | 8445534..8445883 | 287..636 | 1750 | 100 | Plus |
2R | 25286936 | 2R | 8448106..8448452 | 290..636 | 940 | 84.7 | Plus |
2R | 25286936 | 2R | 8446370..8446546 | 1005..1181 | 885 | 100 | Plus |
2R | 25286936 | 2R | 8444771..8444930 | 17..176 | 800 | 100 | Plus |
2R | 25286936 | 2R | 8449188..8449477 | 1179..1468 | 595 | 80.3 | Plus |
2L | 23513712 | 2L | 9749150..9749427 | 636..359 | 595 | 80.9 | Minus |
2R | 25286936 | 2R | 8445356..8445467 | 175..286 | 560 | 100 | Plus |
2R | 25286936 | 2R | 8448533..8448896 | 643..1006 | 380 | 73.6 | Plus |
2L | 23513712 | 2L | 9748021..9748416 | 1591..1196 | 315 | 72 | Minus |
2R | 25286936 | 2R | 8448965..8449128 | 1010..1173 | 310 | 79.3 | Plus |
2L | 23513712 | 2L | 9748729..9748888 | 995..836 | 290 | 78.8 | Minus |
2L | 23513712 | 2L | 9748513..9748600 | 1157..1070 | 200 | 81.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:00:15 has no hits.
BO08387.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:08 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 1..1581 | 17..1598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:27 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 54..1640 | 12..1598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:36:11 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 61..1638 | 17..1596 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:08 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 54..1640 | 12..1598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:10 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4e2-RA | 61..1638 | 17..1596 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:10 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8446372..8446546 | 1007..1181 | 100 | -> | Plus |
2R | 8445534..8445883 | 287..636 | 100 | -> | Plus |
2R | 8445942..8446311 | 637..1006 | 100 | -> | Plus |
2R | 8444771..8444930 | 17..176 | 100 | -> | Plus |
2R | 8445358..8445467 | 177..286 | 100 | -> | Plus |
2R | 8446607..8447019 | 1182..1596 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:36:11 Download gff for
BO08387.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4332276..4332435 | 17..176 | 100 | -> | Plus |
arm_2R | 4332863..4332972 | 177..286 | 100 | -> | Plus |
arm_2R | 4333039..4333388 | 287..636 | 100 | -> | Plus |
arm_2R | 4333447..4333816 | 637..1006 | 100 | -> | Plus |
arm_2R | 4333877..4334051 | 1007..1181 | 100 | -> | Plus |
arm_2R | 4334112..4334524 | 1182..1596 | 99 | | Plus |
BO08387.pep Sequence
Translation from 16 to 1612
> BO08387.pep
MWFVLYIFLALPLLLVAYLELSTFRRRRVLNKFNGPRGLPLMGNAHQMGK
NPSEILDTVFSWWHQYGKDNFVFWIGTYSNVLVTSSKYLEFILSSQTLIT
KSDIYQLTHPWLGLGLLTSTGSKWHKHRKMITPAFHFNILQDFHEVMNEN
STKFIKHLKTVAAGDNIFDFQEQAHYLTLDVICDTAMGVSINAMENRSSS
IVQAFKDMCYNINMRAFHPLKRNELLYRLAPDYPAYSRTLKTLQDFTNEI
IAKRIEAHKSGAVSTNAGDEFTRKKMAFLDTLLSSTIDGRPLNSKELYEE
VSTFMFEGHDTTTSGVSFAVYLLSRHQDEQRKLFKEQREVMGNSELGRDA
TFQEISQMKYLDLFIKEAQRVYPSVPFIGRFTEKDYVIDGDLVPKGTTLN
LGLVMLGYNEKVFKDPHKFRPERFELEKPGPFEYVPFSAGPRNCIGQKFA
LLEIKTVVSKIIRNFEVLPALDELVSKDGYISTTIGLPDAERKKRDPYRH
KYDPILSAVLTLKSENGLYIRLKERHASFLDH
BO08387.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4e2-PB | 526 | CG2060-PB | 1..526 | 1..526 | 2751 | 100 | Plus |
Cyp4e2-PA | 526 | CG2060-PA | 1..526 | 1..526 | 2751 | 100 | Plus |
Cyp4e1-PA | 531 | CG2062-PA | 1..525 | 1..525 | 2251 | 80.8 | Plus |
Cyp4e3-PA | 526 | CG4105-PA | 1..526 | 1..527 | 1960 | 68.7 | Plus |
Cyp4d1-PA | 512 | CG3656-PA | 1..479 | 1..467 | 925 | 41.5 | Plus |