Clone Sequence Records
BO08391.3prime Sequence
876 bp (867 high quality bases) assembled on 2006-01-06
> BO08391.3prime
ATGGTCTAGAAAGCTTGCCTGTGCATTTCGCACGTACTCGGGATCAACGT
TGATAAAGTTGCTCATGCTGAAAAATATTGAGCTGTTCTTTACGAGGAAT
TTAAGGAAATCCTGCACGTGCGTGAGTAGGTTCTGCATGGACTGCTGATC
CAACGCAGAGTAGCTGAGCATTGAGCCAAGGCGGACAAACAGACGCAGCA
GGTGAAAAGATCCGTAAAGCTCGGACAACGGTGTGTCCGGATGCTTCTGC
ATCACATCCGCGTACTGGGTGCGTTCGAATTTGTACAGCAACTGGGAGCC
CAGCATTACATTGAAGTACTCTACAATTCCGTCGAGTACATCGTTTATGG
CAACCTCCTTGCTGGCACTGGTCGATTTCACGGACTTCTTGTGCGCCAAA
TACTGCTCAGAGATCTGCTGCACGGTAACCTTGGCGGGCAGCTCCAGCAG
TTTGTGCTCCCGCACCACCGCATACCAGTCGTCGGTCAGATAGTGCTTTA
ACTCGTCGGGTATCTTAATCTTGACCTCCACCTTAGCTGCGTAGGCCTCC
TCGCTTTCCACACACGGTGCCGGCTCCGTGGTGGGTGTGGATGGAGTGGT
AGTGGGCGGCAACGGCTTTTCTGCTACATCGCTTCCCGTAAGAGAAGGCC
GTTGTTCGCTCATTCTTTTCTTTTTCGGCGCCACCGGCCCCTCTTCCTCA
GTGGTCTCAGCTGCGGCGGGGTCTTCCTTTTTATCACTCGGCGTGCCAGG
TCTTGCTGTGGATGGCGTCGATTGTGTGGACTTTCGGTGGGCCCGGCTGG
TTGTAGAGTTGGCGGTGCTGTTAGTAGTCGTGGTGCCAGTGCTCCCGGCT
TCCGATTTGCTTCCCGGTCCGGCGCT
BO08391.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6363-PA | 1275 | MRG15-RA | 415..1272 | 876..19 | 4290 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:08:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RB | 1511 | CG6363-RB | 506..1363 | 876..19 | 4290 | 100 | Minus |
MRG15-RA | 1496 | CG6363-RA | 491..1348 | 876..19 | 4290 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:08:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276588..15277445 | 19..876 | 4290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:08:56 has no hits.
BO08391.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:00 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-PA | 415..1275 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:13 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6363-PA | 415..1275 | 15..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:03:56 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 491..1353 | 13..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:12:07 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 491..1353 | 13..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:12:07 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15276583..15277445 | 13..876 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:03:56 Download gff for
BO08391.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11102305..11103167 | 13..876 | 99 | | Plus |
BO08391.5prime Sequence
956 bp (770 high quality bases) assembled on 2006-01-06
> BO08391.5prime
GAAGTTATCAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACT
ATAGCACGGGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTT
CTGTGCTTCCACGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAA
ACCCGATGCGACGCCGGTTGAGTACTACATCCACTACGCGGGCTGGAGTA
AAAACTGGGACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGAT
GACAACGTCAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTC
CAAGAAGGATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGA
TGCGGAACGAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCG
CAATCGACCGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAA
ATCGGAAGCCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACT
CTACAACCAGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACA
GCAAGACCTGGCACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGA
GACCACTGAGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCG
AACAACGGCCTTCTCTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCG
CCCACTACCACTCCATCCACACCCACCACGGAGCCGGCACCGTGTGTGGA
AAGCGAGGAGGCCTACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCG
ACGAGTTAAAGCACTATCTGACCGACGACTGGTATGCGGTGGTGCGGGAG
CACAAACTGCTGGAGCTGCCCGCAAGGTTACCGTGCAGCAGATCTCTGAG
CAGTATTTGGCGCACAAGAAGTCCGTGAAATCGACCAGTGCCAGCAAGGA
GGTTGC
BO08391.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6363-PA | 1275 | MRG15-RA | 1..857 | 17..873 | 4285 | 100 | Plus |
CG6363-PA | 1275 | MRG15-RA | 858..941 | 873..956 | 420 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1496 | CG6363-RA | 77..1017 | 17..956 | 4680 | 99.9 | Plus |
MRG15-RB | 1511 | CG6363-RB | 77..1032 | 17..956 | 4520 | 98.3 | Plus |
l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 17..69 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276919..15277557 | 956..319 | 3145 | 99.8 | Minus |
3R | 32079331 | 3R | 15277613..15277729 | 321..205 | 585 | 100 | Minus |
3R | 32079331 | 3R | 15277786..15277901 | 204..89 | 580 | 100 | Minus |
3R | 32079331 | 3R | 15277960..15278033 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:28:44 has no hits.
BO08391.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:01 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:15 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6363-PA | 1..941 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:39:00 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1017 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:59:59 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1017 | 17..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:59:59 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15276919..15277555 | 321..956 | 99 | <- | Minus |
3R | 15277614..15277729 | 205..320 | 100 | <- | Minus |
3R | 15277786..15277900 | 90..204 | 100 | <- | Minus |
3R | 15277961..15278033 | 17..89 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:39:00 Download gff for
BO08391.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11102641..11103277 | 321..956 | 99 | <- | Minus |
arm_3R | 11103336..11103451 | 205..320 | 100 | <- | Minus |
arm_3R | 11103508..11103622 | 90..204 | 100 | <- | Minus |
arm_3R | 11103683..11103755 | 17..89 | 100 | | Minus |
BO08391.complete Sequence
1306 bp (1306 high quality bases) assembled on 2006-01-10
GenBank Submission: FJ631174
> BO08391.complete
GAAGTTATCAGTCGACATGGGAGAAGTAAAACCCGCTAAAGTGGAAAACT
ATAGCACGGGGACCGATGCAAACACTCTGTTCGTGGATGGGGAACGGGTT
CTGTGCTTCCACGGACCGCTCATCTACGAGGCCAAGGTTCTGAAAACAAA
ACCCGATGCGACGCCGGTTGAGTACTACATCCACTACGCGGGCTGGAGTA
AAAACTGGGACGAGTGGGTGCCCGAGAACCGAGTCCTCAAGTACAACGAT
GACAACGTCAAGCGACGTCAGGAACTGGCTCGCCAGTGCGGCGAGCGCTC
CAAGAAGGATAATAAGAAAGGCAGCGCCAAGGCCAAGAAAATGGAACAGA
TGCGGAACGAATCTCGTGCCTCGACGCCGTCTAAGGATAGCAACACCTCG
CAATCGACCGCTAGCAGCACACCAACAACTAGCGCCGGACCGGGAAGCAA
ATCGGAAGCCGGGAGCACTGGCACCACGACTACTAACAGCACCGCCAACT
CTACAACCAGCCGGGCCCACCGAAAGTCCACACAATCGACGCCATCCACA
GCAAGACCTGGCACGCCGAGTGATAAAAAGGAAGACCCCGCCGCAGCTGA
GACCACTGAGGAAGAGGGGCCGGTGGCGCCGAAAAAGAAAAGAATGAGCG
AACAACGGCCTTCTCTTACGGGAAGCGATGTAGCAGAAAAGCCGTTGCCG
CCCACTACCACTCCATCCACACCCACCACGGAGCCGGCACCGTGTGTGGA
AAGCGAGGAGGCCTACGCAGCTAAGGTGGAGGTCAAGATTAAGATACCCG
ACGAGTTAAAGCACTATCTGACCGACGACTGGTATGCGGTGGTGCGGGAG
CACAAACTGCTGGAGCTGCCCGCCAAGGTTACCGTGCAGCAGATCTCTGA
GCAGTATTTGGCGCACAAGAAGTCCGTGAAATCGACCAGTGCCAGCAAGG
AGGTTGCCATAAACGATGTACTCGACGGAATTGTAGAGTACTTCAATGTA
ATGCTGGGCTCCCAGTTGCTGTACAAATTCGAACGCACCCAGTACGCGGA
TGTGATGCAGAAGCATCCGGACACACCGTTGTCCGAGCTTTACGGATCTT
TTCACCTGCTGCGTCTGTTTGTCCGCCTTGGCTCAATGCTCAGCTACTCT
GCGTTGGATCAGCAGTCCATGCAGAACCTACTCACGCACGTGCAGGATTT
CCTTAAATTCCTCGTAAAGAACAGCTCAATATTTTTCAGCATGAGCAACT
TTATCAACGTTGATCCCGAGTACGTGCGAAATGCACAGGCAAGCTTTCTA
GACCAT
BO08391.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1275 | CG6363-PA | 1..1272 | 17..1288 | 6360 | 100 | Plus |
MRG15-RB | 1290 | CG6363-PB | 1..1287 | 17..1288 | 6175 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-RA | 1496 | CG6363-RA | 77..1348 | 17..1288 | 6360 | 100 | Plus |
MRG15-RB | 1511 | CG6363-RB | 77..1363 | 17..1288 | 6175 | 98.8 | Plus |
l(3)neo43-RC | 627 | CG14865-RC | 575..627 | 17..69 | 265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15276588..15277557 | 1288..319 | 4850 | 100 | Minus |
3R | 32079331 | 3R | 15277613..15277729 | 321..205 | 585 | 100 | Minus |
3R | 32079331 | 3R | 15277786..15277901 | 204..89 | 580 | 100 | Minus |
3R | 32079331 | 3R | 15277960..15278033 | 90..17 | 370 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:03:25 has no hits.
BO08391.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:10:09 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 1..1275 | 17..1292 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:30:29 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1353 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:43:33 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1348 | 17..1290 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:10:10 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1353 | 17..1294 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:17:23 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
MRG15-RA | 77..1348 | 17..1290 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:17:23 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15277614..15277729 | 205..320 | 100 | <- | Minus |
3R | 15277786..15277900 | 90..204 | 100 | <- | Minus |
3R | 15277961..15278033 | 17..89 | 100 | | Minus |
3R | 15276586..15277555 | 321..1290 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:43:33 Download gff for
BO08391.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11103336..11103451 | 205..320 | 100 | <- | Minus |
arm_3R | 11103508..11103622 | 90..204 | 100 | <- | Minus |
arm_3R | 11103683..11103755 | 17..89 | 100 | | Minus |
arm_3R | 11102308..11103277 | 321..1290 | 99 | <- | Minus |
BO08391.pep Sequence
Translation from 16 to 1306
> BO08391.pep
MGEVKPAKVENYSTGTDANTLFVDGERVLCFHGPLIYEAKVLKTKPDATP
VEYYIHYAGWSKNWDEWVPENRVLKYNDDNVKRRQELARQCGERSKKDNK
KGSAKAKKMEQMRNESRASTPSKDSNTSQSTASSTPTTSAGPGSKSEAGS
TGTTTTNSTANSTTSRAHRKSTQSTPSTARPGTPSDKKEDPAAAETTEEE
GPVAPKKKRMSEQRPSLTGSDVAEKPLPPTTTPSTPTTEPAPCVESEEAY
AAKVEVKIKIPDELKHYLTDDWYAVVREHKLLELPAKVTVQQISEQYLAH
KKSVKSTSASKEVAINDVLDGIVEYFNVMLGSQLLYKFERTQYADVMQKH
PDTPLSELYGSFHLLRLFVRLGSMLSYSALDQQSMQNLLTHVQDFLKFLV
KNSSIFFSMSNFINVDPEYVRNAQASFLDH
BO08391.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
MRG15-PA | 424 | CG6363-PA | 1..424 | 1..424 | 2193 | 100 | Plus |
MRG15-PB | 429 | CG6363-PB | 1..429 | 1..424 | 2177 | 98.8 | Plus |