Clone BO08393 Report

Search the DGRC for BO08393

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:83
Well:93
Vector:pDNR-Dual
Associated Gene/Transcriptpasha-RA
Protein status:BO08393.pep: validated full length
Sequenced Size:1960

Clone Sequence Records

BO08393.3prime Sequence

921 bp (829 high quality bases) assembled on 2006-01-06

> BO08393.3prime
ATGGTCTAGAAAGCTTGCAAGTTCCACGTTGTTCAAATTGGACCCGGAGG
AAGTGGGCAGATCGACGTCGCTTGGCGGCACAAAAGTGCCCATGGTTAGG
ACGCTCTCCTGCTTGGCACACAGTTTCAACATCTCGGATTTAAGTTTGTC
CAGTATGGCGTAGTTGGGTTGGTTGACTGCCGCCTTGCTCTGCAGCACGG
TGATCTCCTGCTCCTCCAGCTTCTTCTCCTTGAAGGTCTTTATGGAGTTG
TTGCCGTAGAGGCGCAACAAGGAACCCCAGGTCTGGATGTGCGGATGCAA
AATCTGGAGGATTGCTTGCGAAGCCAACTGCTTGCCCTCCCGCTTGTTTT
TACACACCACTTTGGCAGTATGTTTGCCCACGGTCATGGTAAACTCGTTC
TTGTTATTCGCGGTGCGGTTGATCTCCTGGCTGATCTGAACATCGCTGCC
GTAGTTGCGCTGCAAGCAAGTCAGCAGAATGGCGTTGGGAGATGGCTCCG
TCGTCTTGTTGCAGAATTCGGTGACTCGGGGATCTTCGATGCGGATGTCA
TCGAAAACAGACAGATCGCTCTGCGCTTTCTTCGCAGTGCCGCTCTTTTG
GTCCTTATTGTTGCCCGTTATCTTGTCCTTGACATCGGGAATGAGTATTT
CCAGCGTTTCCCGAGCCGCCTCTGACTTGGCCTGCTTTTTACTGGTGCCA
TAGCCCGTGCCATACTTGAGATTGTTCACCGATACGGTGGCGGAGTAAGG
CGTGGCTGCGTTTTGGAGCTCCTTGAACTCATAGGTGGGCTGCGTTTTCA
GAGCATGCTGCACGTACTCGTGCAGGATGCAGACGAAGCTCTTGCCATTG
GGATTCATGATCCACTCCTTCCGACCGCGCGGGTTCGTTGATCCTTCGCC
AGCATTCGCTAGTATTGGGAA

BO08393.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1800-PA 1929 pasha-RA 1024..1926 921..19 4515 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:23
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 1134..2036 921..19 4515 100 Minus
pasha-RB 2123 CG1800-RB 861..1763 921..19 4515 100 Minus
pasha-RA 2847 CG1800-RA 1585..2487 921..19 4515 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31620097..31620461 921..557 1825 100 Minus
3R 32079331 3R 31620827..31621114 306..19 1440 100 Minus
3R 32079331 3R 31620516..31620770 558..304 1275 100 Minus
Blast to na_te.dros performed on 2015-02-10 21:25:20 has no hits.

BO08393.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:02 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-PA 1026..1929 16..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:16 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1800-PA 1026..1929 16..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:58 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1585..2487 19..921 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:43 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1585..2487 19..921 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:43 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31620830..31621114 19..303 100   Minus
3R 31620097..31620459 559..921 100 -> Minus
3R 31620516..31620770 304..558 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:58 Download gff for BO08393.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27445819..27446181 559..921 100 -> Minus
arm_3R 27446238..27446492 304..558 100 -> Minus
arm_3R 27446552..27446836 19..303 100   Minus

BO08393.5prime Sequence

844 bp (830 high quality bases) assembled on 2006-01-06

> BO08393.5prime
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACG

BO08393.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG1800-PA 1929 pasha-RA 1..828 17..844 4140 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:57
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 111..938 17..844 4140 100 Plus
pasha-RA 2847 CG1800-RA 562..1389 17..844 4140 100 Plus
pasha-RB 2123 CG1800-RB 65..665 244..844 3005 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:51
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31619508..31619901 451..844 1970 100 Plus
3R 32079331 3R 31618538..31618769 17..248 1160 100 Plus
3R 32079331 3R 31619238..31619444 246..452 1035 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:37:54 has no hits.

BO08393.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:03 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:17 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1800-PA 1..828 17..844 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:17 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..1389 9..844 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:16 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..1389 9..844 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:16 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31619241..31619444 249..452 100 -> Plus
3R 31618531..31618769 9..248 98 -> Plus
3R 31619510..31619901 453..844 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:17 Download gff for BO08393.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27444253..27444491 9..248 98 -> Plus
arm_3R 27444963..27445166 249..452 100 -> Plus
arm_3R 27445232..27445623 453..844 100   Plus

BO08393.complete Sequence

1960 bp (1960 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631175

> BO08393.complete
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAAC
GAGAATACCCAAAAGGAATCCATTACACCGGAGCAACTAAACACCTACTG
CCAGAAACTCTTCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTT
GGAATGCTCGCCGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATT
CAACGACCCACGCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACT
AGCGAATGCTGGCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGA
TCATGAATCCCAATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTG
CAGCATGCTCTGAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAA
CGCAGCCACGCCTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATG
GCACGGGCTATGGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGG
GAAACGCTGGAAATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAA
CAATAAGGACCAAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGT
CTGTTTTCGATGACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGC
AACAAGACGACGGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCA
GCGCAACTACGGCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCG
CGAATAACAAGAACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAA
GTGGTGTGTAAAAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAAT
CCTCCAGATTTTGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCC
TCTACGGCAACAACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAG
CAGGAGATCACCGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTA
CGCCATACTGGACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGC
AGGAGAGCGTCCTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGAT
CTGCCCACTTCCTCCGGGTCCAATTTGAACAACGTGGAACTTGCAAGCTT
TCTAGACCAT

BO08393.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:28
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 1929 CG1800-PC 1..1926 17..1942 9630 100 Plus
pasha-RA 1929 CG1800-PA 1..1926 17..1942 9630 100 Plus
pasha-RB 1743 CG1800-PB 42..1740 244..1942 8495 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:29
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-RC 2579 CG1800-RC 111..2036 17..1942 9630 100 Plus
pasha-RA 2847 CG1800-RA 562..2487 17..1942 9630 100 Plus
pasha-RB 2123 CG1800-RB 65..1763 244..1942 8495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31619508..31620461 451..1404 4770 100 Plus
3R 32079331 3R 31620827..31621114 1655..1942 1440 100 Plus
3R 32079331 3R 31620516..31620770 1403..1657 1275 100 Plus
3R 32079331 3R 31618538..31618769 17..248 1160 100 Plus
3R 32079331 3R 31619238..31619444 246..452 1035 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:51:27 has no hits.

BO08393.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:47 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 1..1929 17..1945 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:10 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..2487 9..1942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:16 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 562..2487 17..1944 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:47 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 555..2487 9..1942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:44 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
pasha-RA 562..2487 17..1944 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:44 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
3R 31620516..31620770 1403..1657 100 -> Plus
3R 31620830..31621114 1658..1944 99   Plus
3R 31618538..31618769 17..248 100 -> Plus
3R 31619241..31619444 249..452 100 -> Plus
3R 31619510..31620459 453..1402 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:16 Download gff for BO08393.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27444260..27444491 17..248 100 -> Plus
arm_3R 27444963..27445166 249..452 100 -> Plus
arm_3R 27445232..27446181 453..1402 100 -> Plus
arm_3R 27446238..27446492 1403..1657 100 -> Plus
arm_3R 27446552..27446836 1658..1944 99   Plus

BO08393.pep Sequence

Translation from 16 to 1960

> BO08393.pep
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVELASFLDH

BO08393.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:49
Subject Length Description Subject Range Query Range Score Percent Strand
pasha-PC 642 CG1800-PC 1..642 1..642 3334 100 Plus
pasha-PA 642 CG1800-PA 1..642 1..642 3334 100 Plus
pasha-PB 580 CG1800-PB 15..580 77..642 2946 100 Plus