Clone Sequence Records
BO08393.3prime Sequence
921 bp (829 high quality bases) assembled on 2006-01-06
> BO08393.3prime
ATGGTCTAGAAAGCTTGCAAGTTCCACGTTGTTCAAATTGGACCCGGAGG
AAGTGGGCAGATCGACGTCGCTTGGCGGCACAAAAGTGCCCATGGTTAGG
ACGCTCTCCTGCTTGGCACACAGTTTCAACATCTCGGATTTAAGTTTGTC
CAGTATGGCGTAGTTGGGTTGGTTGACTGCCGCCTTGCTCTGCAGCACGG
TGATCTCCTGCTCCTCCAGCTTCTTCTCCTTGAAGGTCTTTATGGAGTTG
TTGCCGTAGAGGCGCAACAAGGAACCCCAGGTCTGGATGTGCGGATGCAA
AATCTGGAGGATTGCTTGCGAAGCCAACTGCTTGCCCTCCCGCTTGTTTT
TACACACCACTTTGGCAGTATGTTTGCCCACGGTCATGGTAAACTCGTTC
TTGTTATTCGCGGTGCGGTTGATCTCCTGGCTGATCTGAACATCGCTGCC
GTAGTTGCGCTGCAAGCAAGTCAGCAGAATGGCGTTGGGAGATGGCTCCG
TCGTCTTGTTGCAGAATTCGGTGACTCGGGGATCTTCGATGCGGATGTCA
TCGAAAACAGACAGATCGCTCTGCGCTTTCTTCGCAGTGCCGCTCTTTTG
GTCCTTATTGTTGCCCGTTATCTTGTCCTTGACATCGGGAATGAGTATTT
CCAGCGTTTCCCGAGCCGCCTCTGACTTGGCCTGCTTTTTACTGGTGCCA
TAGCCCGTGCCATACTTGAGATTGTTCACCGATACGGTGGCGGAGTAAGG
CGTGGCTGCGTTTTGGAGCTCCTTGAACTCATAGGTGGGCTGCGTTTTCA
GAGCATGCTGCACGTACTCGTGCAGGATGCAGACGAAGCTCTTGCCATTG
GGATTCATGATCCACTCCTTCCGACCGCGCGGGTTCGTTGATCCTTCGCC
AGCATTCGCTAGTATTGGGAA
BO08393.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1800-PA | 1929 | pasha-RA | 1024..1926 | 921..19 | 4515 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:25:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 1134..2036 | 921..19 | 4515 | 100 | Minus |
pasha-RB | 2123 | CG1800-RB | 861..1763 | 921..19 | 4515 | 100 | Minus |
pasha-RA | 2847 | CG1800-RA | 1585..2487 | 921..19 | 4515 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:25:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31620097..31620461 | 921..557 | 1825 | 100 | Minus |
3R | 32079331 | 3R | 31620827..31621114 | 306..19 | 1440 | 100 | Minus |
3R | 32079331 | 3R | 31620516..31620770 | 558..304 | 1275 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:25:20 has no hits.
BO08393.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:02 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-PA | 1026..1929 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:16 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1800-PA | 1026..1929 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:11:58 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1585..2487 | 19..921 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:43:43 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1585..2487 | 19..921 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:43:43 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31620830..31621114 | 19..303 | 100 | | Minus |
3R | 31620097..31620459 | 559..921 | 100 | -> | Minus |
3R | 31620516..31620770 | 304..558 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:11:58 Download gff for
BO08393.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27445819..27446181 | 559..921 | 100 | -> | Minus |
arm_3R | 27446238..27446492 | 304..558 | 100 | -> | Minus |
arm_3R | 27446552..27446836 | 19..303 | 100 | | Minus |
BO08393.5prime Sequence
844 bp (830 high quality bases) assembled on 2006-01-06
> BO08393.5prime
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACG
BO08393.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1800-PA | 1929 | pasha-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:37:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 111..938 | 17..844 | 4140 | 100 | Plus |
pasha-RA | 2847 | CG1800-RA | 562..1389 | 17..844 | 4140 | 100 | Plus |
pasha-RB | 2123 | CG1800-RB | 65..665 | 244..844 | 3005 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:37:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31619508..31619901 | 451..844 | 1970 | 100 | Plus |
3R | 32079331 | 3R | 31618538..31618769 | 17..248 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 31619238..31619444 | 246..452 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:37:54 has no hits.
BO08393.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:03 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:17 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1800-PA | 1..828 | 17..844 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:01:17 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..1389 | 9..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:16 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..1389 | 9..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:16 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31619241..31619444 | 249..452 | 100 | -> | Plus |
3R | 31618531..31618769 | 9..248 | 98 | -> | Plus |
3R | 31619510..31619901 | 453..844 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:01:17 Download gff for
BO08393.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27444253..27444491 | 9..248 | 98 | -> | Plus |
arm_3R | 27444963..27445166 | 249..452 | 100 | -> | Plus |
arm_3R | 27445232..27445623 | 453..844 | 100 | | Plus |
BO08393.complete Sequence
1960 bp (1960 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631175
> BO08393.complete
GAAGTTATCAGTCGACATGGCGGAGAAGCCGCTGGCCGACTGCCCGGACT
CTGGGCAGGTCCGCAAGCGTCCCCGGCTGGAGGACGAGGAGCAGGAGCTC
AAGGTGGCCGGCTTTTCGCTGAGCGCCATCGAGGAAATGCGGCGGACCAG
GGACAACGAGCTGCAGAACGAACCCATGGACCAGCAACTGCGACAGTTCC
AGGTTCTCGACGAAGTCGGCTCTGGCAGCGATGAGGATGATGAGTCAGAC
AACGCTAGCGAGCAGCAGGGCGGAAGGTATGGAGAAGGAGGCGACGAGGA
GGAAGAGGCGGCTGATGGTGACGGCGAAGAATACGATTCCTCGGAATTCG
ATGATGACGAGATCGAGAATCTGCTGGACGAGAAGCTGCCCGAAGAGCTC
CGCGAGTCAAAGCAGCCCAAATACGAGCAGCGTTTCAAGACTGTGCTGGA
AGAAAAGCGCCTCAACCACTTTGAAGTCCTACCCGAGGGATGGGTGCAGG
TGACCCACAACAGTGGAATGCCGCTCTTCTTGCATCGCAAAACTCGCGTC
TGTTGCGCATCGAGGCCCTATTTTCTCGGCACTGGAAGTGCCCGCAAGCA
TGCAGTGCCCTTGGGAGCAATCCCCTGTCTTAACTACAGGCGGGCTTTGG
AGGAAGAGTCGGAGGTGGAGCAACAAAAGACGGATGGAGCGCCGCCAGTG
GCTGTATGTCCCATGGCCGGAGCTTCCGCTTTACCGGCCGAAGCCATGGA
CGTGGAGGGAAAAGAGAACAACGAAGGCAGCACCGATTCCAAAACCCAAC
CAGATGGAATAACTGCCCTTATGCCGGCTGCTAAAATTGTTACGGTCAAC
GAGAATACCCAAAAGGAATCCATTACACCGGAGCAACTAAACACCTACTG
CCAGAAACTCTTCAAATTCAAGGTGATTCGTGTGCTGCGATTTCGGAGTT
GGAATGCTCGCCGCAAGTTCACCAAAAACCGCAAACACATCAAGAATATT
CAACGACCCACGCTGCCGGATGGCACTAAGCTTATTAAGTTCCCAATACT
AGCGAATGCTGGCGAAGGATCAACGAACCCGCGCGGTCGGAAGGAGTGGA
TCATGAATCCCAATGGCAAGAGCTTCGTCTGCATCCTGCACGAGTACGTG
CAGCATGCTCTGAAAACGCAGCCCACCTATGAGTTCAAGGAGCTCCAAAA
CGCAGCCACGCCTTACTCCGCCACCGTATCGGTGAACAATCTCAAGTATG
GCACGGGCTATGGCACCAGTAAAAAGCAGGCCAAGTCAGAGGCGGCTCGG
GAAACGCTGGAAATACTCATTCCCGATGTCAAGGACAAGATAACGGGCAA
CAATAAGGACCAAAAGAGCGGCACTGCGAAGAAAGCGCAGAGCGATCTGT
CTGTTTTCGATGACATCCGCATCGAAGATCCCCGAGTCACCGAATTCTGC
AACAAGACGACGGAGCCATCTCCCAACGCCATTCTGCTGACTTGCTTGCA
GCGCAACTACGGCAGCGATGTTCAGATCAGCCAGGAGATCAACCGCACCG
CGAATAACAAGAACGAGTTTACCATGACCGTGGGCAAACATACTGCCAAA
GTGGTGTGTAAAAACAAGCGGGAGGGCAAGCAGTTGGCTTCGCAAGCAAT
CCTCCAGATTTTGCATCCGCACATCCAGACCTGGGGTTCCTTGTTGCGCC
TCTACGGCAACAACTCCATAAAGACCTTCAAGGAGAAGAAGCTGGAGGAG
CAGGAGATCACCGTGCTGCAGAGCAAGGCGGCAGTCAACCAACCCAACTA
CGCCATACTGGACAAACTTAAATCCGAGATGTTGAAACTGTGTGCCAAGC
AGGAGAGCGTCCTAACCATGGGCACTTTTGTGCCGCCAAGCGACGTCGAT
CTGCCCACTTCCTCCGGGTCCAATTTGAACAACGTGGAACTTGCAAGCTT
TCTAGACCAT
BO08393.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 1929 | CG1800-PC | 1..1926 | 17..1942 | 9630 | 100 | Plus |
pasha-RA | 1929 | CG1800-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
pasha-RB | 1743 | CG1800-PB | 42..1740 | 244..1942 | 8495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-RC | 2579 | CG1800-RC | 111..2036 | 17..1942 | 9630 | 100 | Plus |
pasha-RA | 2847 | CG1800-RA | 562..2487 | 17..1942 | 9630 | 100 | Plus |
pasha-RB | 2123 | CG1800-RB | 65..1763 | 244..1942 | 8495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31619508..31620461 | 451..1404 | 4770 | 100 | Plus |
3R | 32079331 | 3R | 31620827..31621114 | 1655..1942 | 1440 | 100 | Plus |
3R | 32079331 | 3R | 31620516..31620770 | 1403..1657 | 1275 | 100 | Plus |
3R | 32079331 | 3R | 31618538..31618769 | 17..248 | 1160 | 100 | Plus |
3R | 32079331 | 3R | 31619238..31619444 | 246..452 | 1035 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:51:27 has no hits.
BO08393.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:47 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 1..1929 | 17..1945 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:10 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..2487 | 9..1942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:12:16 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 562..2487 | 17..1944 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:47 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 555..2487 | 9..1942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:44 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pasha-RA | 562..2487 | 17..1944 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:44 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31620516..31620770 | 1403..1657 | 100 | -> | Plus |
3R | 31620830..31621114 | 1658..1944 | 99 | | Plus |
3R | 31618538..31618769 | 17..248 | 100 | -> | Plus |
3R | 31619241..31619444 | 249..452 | 100 | -> | Plus |
3R | 31619510..31620459 | 453..1402 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:12:16 Download gff for
BO08393.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27444260..27444491 | 17..248 | 100 | -> | Plus |
arm_3R | 27444963..27445166 | 249..452 | 100 | -> | Plus |
arm_3R | 27445232..27446181 | 453..1402 | 100 | -> | Plus |
arm_3R | 27446238..27446492 | 1403..1657 | 100 | -> | Plus |
arm_3R | 27446552..27446836 | 1658..1944 | 99 | | Plus |
BO08393.pep Sequence
Translation from 16 to 1960
> BO08393.pep
MAEKPLADCPDSGQVRKRPRLEDEEQELKVAGFSLSAIEEMRRTRDNELQ
NEPMDQQLRQFQVLDEVGSGSDEDDESDNASEQQGGRYGEGGDEEEEAAD
GDGEEYDSSEFDDDEIENLLDEKLPEELRESKQPKYEQRFKTVLEEKRLN
HFEVLPEGWVQVTHNSGMPLFLHRKTRVCCASRPYFLGTGSARKHAVPLG
AIPCLNYRRALEEESEVEQQKTDGAPPVAVCPMAGASALPAEAMDVEGKE
NNEGSTDSKTQPDGITALMPAAKIVTVNENTQKESITPEQLNTYCQKLFK
FKVIRVLRFRSWNARRKFTKNRKHIKNIQRPTLPDGTKLIKFPILANAGE
GSTNPRGRKEWIMNPNGKSFVCILHEYVQHALKTQPTYEFKELQNAATPY
SATVSVNNLKYGTGYGTSKKQAKSEAARETLEILIPDVKDKITGNNKDQK
SGTAKKAQSDLSVFDDIRIEDPRVTEFCNKTTEPSPNAILLTCLQRNYGS
DVQISQEINRTANNKNEFTMTVGKHTAKVVCKNKREGKQLASQAILQILH
PHIQTWGSLLRLYGNNSIKTFKEKKLEEQEITVLQSKAAVNQPNYAILDK
LKSEMLKLCAKQESVLTMGTFVPPSDVDLPTSSGSNLNNVELASFLDH
BO08393.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pasha-PC | 642 | CG1800-PC | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PA | 642 | CG1800-PA | 1..642 | 1..642 | 3334 | 100 | Plus |
pasha-PB | 580 | CG1800-PB | 15..580 | 77..642 | 2946 | 100 | Plus |