Clone Sequence Records
BO08404.3prime Sequence
983 bp (826 high quality bases) assembled on 2006-01-06
> BO08404.3prime
ATGGTCTAGAAAGCTTGCCTTGCTCAGGCAGGCGGTATCGCTGAGGATCG
AGGCGATCAGCTGCTTGTCGCTCAGTGCCGCATGCACCTCCTCCTCGTCC
CACTGCAGCAGAACCTTGTGCAGGCGCGGCTCCTTTTTGCGCATGATTCG
CAGAATGCCTCGGGTCTCGACCAGATCCACAGTCCCAGTGAACTCCGCTT
GGTCCAGGGCCAGGATGTTGCGTTTGGCGCACACTCTCCTGTAGACCTCG
TGCAGGCGACCCATACTGATGTCTTTGTTGCGCTCGTTGCGCAGCATCAG
CACCAGGGTGCACAGCATTAGCTTTTGCTGCAGCGGAAATGATGCCTCGA
TGTCCTCCTCCAGATTCTGTGAGGCACCGTAGACCTTGTTCAGCACTGCA
GCCACTTGGGTGACCTGAACAGGCTTTAGAGTGTCTTGCTTTTCCTTGGC
CTCCACCGCATCCTTGCCCTCCAGCTGCAGGGCCTTCATATTGAACTCCT
TTTCGCCATCGCGCTTCTGCTGCTCTGCTATCTCGACCACTCGTCGTCCA
ATGTCCAGGGCCCTTCGCACATCTCCACTGATCGCACTCACCTTGGCGGC
CAGCAGCTGCAGGGTCACGGGTGGAAAGACGTCCAGCACTTCCGCCTCAG
CCAGACGCGACTTGAATATCTCCACGATCTGCTGCTTGGAGTAGGGCGGG
AAGTGCATCAGTCTGGGCTTCAGCTCGCACCTTGCATTCAGTCGCATCAG
CGCACGATCTGTGAGATCCAAACTATTGGCAATGCCCACGAGCAGTATCC
TGGAGCCGGGAAGAGCTGGCCACTCGAAGATCGTGTACAACACCTCCTGC
CTGCTGGTGCAGAGCTGATCAATCTCGTCCAGCACCAGCAGAAGCATTCG
CTTTGCTGTCTTTAGGTGACGCTGAATGGCCTCCAAGTGATCTCTCTCTG
TGCGACCGCTGACTTTGAGCTGCAGGTCGGTGC
BO08404.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5971-PA | 1989 | CG5971-RA | 1022..1986 | 983..19 | 4800 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:48:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 1142..2106 | 983..19 | 4810 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:48:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8632380..8632928 | 435..983 | 2730 | 99.8 | Plus |
| 3L | 28110227 | 3L | 8631886..8632303 | 19..436 | 2090 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:48:10 has no hits.
BO08404.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:12 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1022..1989 | 16..983 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:31 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1022..1989 | 16..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:59:40 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1142..2106 | 19..983 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:39:30 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1142..2106 | 19..983 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:39:30 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8631886..8632301 | 19..434 | 100 | <- | Plus |
| 3L | 8632380..8632928 | 435..983 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:59:40 Download gff for
BO08404.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8624986..8625401 | 19..434 | 100 | <- | Plus |
| arm_3L | 8625480..8626028 | 435..983 | 99 | | Plus |
BO08404.5prime Sequence
915 bp (836 high quality bases) assembled on 2006-01-06
> BO08404.5prime
GAAGTTATCAGTCGACATGGCTGCCGTACGCCGCTCCACGCGCCTTAGTA
GCATCAGCAAAGCGACCGCCGCCTCTCCGCTGCCGCCGTCGACGCAGACG
CCGCGTCGCTCGGAAGTTTGGAAACGCAGGCAGCCGAAAAAAGTGCTTGC
CGATAGCGACGAGGAGGAGGAGGTGGTGACGGCGATCTATGACCTGACCA
GCCCCGTTTCAGAGAACAACGAGAACCGCAACGTGCTCAACAAAATGGAC
AAGATCTCCAGGCGCAGGACATCGCAAGTGCAGGTGGCTCAATCGGAGCT
GCCAAAGACGCCACGCAGCACAAAGAAAACAGTCCAATCAGCTGGCAGTT
CACGGGCCAAACGTGAGGAGGAAAACCGTGAGGCCACCGCTAGATTCTTG
GAGGGCGAACAGGATTCGGAGGTGGACCCGCTTCATGGATCGCCGCCGAA
GCAGAGGAAGTTGCAGCCACTGCCACAGCACCTGATCAGTCCTTCGCGGC
TGCTGGACAGACTCAGCATCGACGAGCGCCAGGAGGAAGAGGTGGAGGCG
ACCACACACAAGACTGAAACGGCTGAGCAGCAGCCGAAACATCAAGCCAA
GGACGAGGCAAAGCCTCGGCCAAAACAGCAGGAGGATCCATTAGCGCAAA
AGCAGCAGGAGAAACCTCCAACAAAGCAGCCGAATAAAAACCAAACTAAA
GAAAAAAGCAATATCCAAACCAATGAGGAAACCCAACAGAATAACCTGCC
ATCTCCCTCACGCAACAAATACCAAAACGCCAGACGAGTGCTCAACAGCG
CCGAGACACAAAACTTGCCAGGACGTGAGTCCCAGCTCCNAGAGCTACGT
GAATTCTTCAGCAATCACCTGGGAAAGCAGACTTCCGGCAGCCTCTATGT
CTCCGGTCAGCCAGG
BO08404.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5971-PA | 1989 | CG5971-RA | 1..899 | 17..915 | 4401 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:58:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 121..1019 | 17..915 | 4439 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8633051..8633949 | 915..17 | 4439 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:58:51 has no hits.
BO08404.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:13 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:33 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5971-PA | 1..899 | 17..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:23:07 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 119..1019 | 14..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:35:26 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 119..1019 | 14..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:35:26 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8633051..8633951 | 14..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:23:07 Download gff for
BO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8626151..8627051 | 14..915 | 99 | | Minus |
BO08404.complete Sequence
2020 bp (2020 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631177
> BO08404.complete
GAAGTTATCAGTCGACATGGCTGCCGTACGCCGCTCCACGCGCCTTAGTA
GCATCAGCAAAGCGACCGCCGCCTCTCCGCTGCCGCCGTCGACGCAGACG
CCGCGTCGCTCGGAAGTTTGGAAACGCAGGCAGCCGAAAAAAGTGCTTGC
CGATAGCGACGAGGAGGAGGAGGTGGTGACGGCGATCTATGACCTGACCA
GCCCCGTTTCAGAGAACAACGAGAACCGCAACGTGCTCAACAAAATGGAC
AAGATCTCCAGGCGCAGGACATCGCAAGTGCAGGTGGCTCAATCGGAGCT
GCCAAAGACGCCACGCAGCACAAAGAAAACAGTCCAATCAGCTGGCAGTT
CACGGGCCAAACGTGAGGAGGAAAACCGTGAGGCCACCGCTAGATTCTTG
GAGGGCGAACAGGATTCGGAGGTGGACCCGCTTCATGGATCGCCGCCGAA
GCAGAGGAAGTTGCAGCCACTGCCACAGCACCTGATCAGTCCTTCGCGGC
TGCTGGACAGACTCAGCATCGACGAGCGCCAGGAGGAAGAGGTGGAGGCG
ACCACACACAAGACTGAAACGGCTGAGCAGCAGCCGAAACATCAAGCCAA
GGACGAGGCAAAGCCTCGGCCAAAACAGCAGGAGGATCCATTAGCGCAAA
AGCAGCAGGAGAAACCTCCAACAAAGCAGCCGAATAAAAACCAAACTAAA
GAAAAAAGCAATATCCAAACCAATGAGGAAACCCAACAGAATAACCTGCC
ATCTCCCTCACGCAACAAATACCAAAACGCCAGACGAGTGCTCAACAGCG
CCGAGACACAAAACTTGCCAGGACGTGAGTCCCAGCTCCAAGAGCTACGT
GAATTCTTCAGCAATCACCTGGAAAGCCAGACTTCCGGCAGCCTCTATGT
CTCCGGTCAGCCAGGAACAGGCAAGACCGCCTGCCTATCGCTACTGCTGA
GAGATCCCGACTTCTCCAAGCGTCTGCAACGTGTGTACATTAACTGCACC
AGCATAGCAAGTGTAGGAGCAGTTTACAAGAAACTATGCACCGAACTGCA
GCTCAAAGTCAGCGGTCGCACAGAGAGAGATCACTTGGAGGCCATTCAGC
GTCACCTAAAGACAGCAAAGCGAATGCTTCTGCTGGTGCTGGACGAGATT
GATCAGCTCTGCACCAGCAGGCAGGAGGTGTTGTACACGATCTTCGAGTG
GCCAGCTCTTCCCGGCTCCAGGATACTGCTCGTGGGCATTGCCAATAGTT
TGGATCTCACAGATCGTGCGCTGATGCGACTGAATGCAAGGTGCGAGCTG
AAGCCCAGACTGATGCACTTCCCGCCCTACTCCAAGCAGCAGATCGTGGA
GATATTCAAGTCGCGTCTGGCTGAGGCGGAAGTGCTGGACGTCTTTCCAC
CCGTGACCCTGCAGCTGCTGGCCGCCAAGGTGAGTGCGATCAGTGGAGAT
GTGCGAAGGGCCCTGGACATTGGACGACGAGTGGTCGAGATAGCAGAGCA
GCAGAAGCGCGATGGCGAAAAGGAGTTCAATATGAAGGCCCTGCAGCTGG
AGGGCAAGGATGCGGTGGAGGCCAAGGAAAAGCAAGACACTCTAAAGCCT
GTTCAGGTCACCCAAGTGGCTGCAGTGCTGAACAAGGTCTACGGTGCCTC
ACAGAATCTGGAGGAGGACATCGAGGCATCATTTCCGCTGCAGCAAAAGC
TAATGCTGTGCACCCTGGTGCTGATGCTGCGCAACGAGCGCAACAAAGAC
ATCAGTATGGGTCGCCTGCACGAGGTCTACAGGAGAGTGTGCGCCAAACG
CAACATCCTGGCCCTGGACCAAGCGGAGTTCACTGGGACTGTGGATCTGG
TCGAGACCCGAGGCATTCTGCGAATCATGCGCAAAAAGGAGCCGCGCCTG
CACAAGGTTCTGCTGCAGTGGGACGAGGAGGAGGTGCATGCGGCACTGAG
CGACAAGCAGCTGATCGCCTCGATCCTCAGCGATACCGCCTGCCTGAGCA
AGGCAAGCTTTCTAGACCAT
BO08404.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:55:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 1989 | CG5971-PA | 1..1986 | 17..2002 | 9930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-RA | 2483 | CG5971-RA | 121..2106 | 17..2002 | 9930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8632380..8633949 | 1586..17 | 7850 | 100 | Minus |
| 3L | 28110227 | 3L | 8631886..8632303 | 2002..1585 | 2090 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:55:10 has no hits.
BO08404.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:50 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 1..1989 | 17..2005 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:13 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 131..2118 | 14..2002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:27:25 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 121..2106 | 17..2004 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:50 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 131..2118 | 14..2002 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:07:18 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdc6-RA | 121..2106 | 17..2004 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:07:18 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8631882..8632301 | 1587..2004 | 99 | <- | Minus |
| 3L | 8632380..8633949 | 17..1586 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:27:25 Download gff for
BO08404.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8624982..8625401 | 1587..2004 | 99 | <- | Minus |
| arm_3L | 8625480..8627049 | 17..1586 | 100 | | Minus |
BO08404.pep Sequence
Translation from 16 to 2020
> BO08404.pep
MAAVRRSTRLSSISKATAASPLPPSTQTPRRSEVWKRRQPKKVLADSDEE
EEVVTAIYDLTSPVSENNENRNVLNKMDKISRRRTSQVQVAQSELPKTPR
STKKTVQSAGSSRAKREEENREATARFLEGEQDSEVDPLHGSPPKQRKLQ
PLPQHLISPSRLLDRLSIDERQEEEVEATTHKTETAEQQPKHQAKDEAKP
RPKQQEDPLAQKQQEKPPTKQPNKNQTKEKSNIQTNEETQQNNLPSPSRN
KYQNARRVLNSAETQNLPGRESQLQELREFFSNHLESQTSGSLYVSGQPG
TGKTACLSLLLRDPDFSKRLQRVYINCTSIASVGAVYKKLCTELQLKVSG
RTERDHLEAIQRHLKTAKRMLLLVLDEIDQLCTSRQEVLYTIFEWPALPG
SRILLVGIANSLDLTDRALMRLNARCELKPRLMHFPPYSKQQIVEIFKSR
LAEAEVLDVFPPVTLQLLAAKVSAISGDVRRALDIGRRVVEIAEQQKRDG
EKEFNMKALQLEGKDAVEAKEKQDTLKPVQVTQVAAVLNKVYGASQNLEE
DIEASFPLQQKLMLCTLVLMLRNERNKDISMGRLHEVYRRVCAKRNILAL
DQAEFTGTVDLVETRGILRIMRKKEPRLHKVLLQWDEEEVHAALSDKQLI
ASILSDTACLSKASFLDH
BO08404.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdc6-PA | 662 | CG5971-PA | 1..662 | 1..662 | 3327 | 100 | Plus |
| Orc1-PA | 924 | CG10667-PA | 393..798 | 90..494 | 359 | 28.2 | Plus |
