Clone BO08408 Report

Search the DGRC for BO08408

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:8
Vector:pDNR-Dual
Associated Gene/TranscriptFer1HCH-RA
Protein status:BO08408.pep: validated full length
Sequenced Size:649

Clone Sequence Records

BO08408.3prime Sequence

647 bp (646 high quality bases) assembled on 2006-01-06

> BO08408.3prime
ATGGTCTAGAAAGCTTGCCAGGGTCTTGTCGAACAGGAACTCGCCCAGTT
CGCCGTTGGTGTCCATCATCTTCTTGAGAGTGGTCAGCTTGCCGGCGAGC
TCGCGCTGTCCGTGGAGCTGCTCCTCCAGATAGACACCGGTCAGGTAGTC
CACCAGGTGGTAGTGGTTGTAGGGCTTGTTCTCGCAGGTCTGGATCAGCT
TGCGGATGGACTTGGTCACCTTGATCTCCAGGTCGAGGGCGTCGGACAGG
GCGGCGGCACCATCGGTCCACTCCTGCTTGGCCACAGTCGGCACATTGAT
CAGATCGCTGACTCCCTCGGTCAGTTGACCGCGCATGGACAGGTACTCCA
CCAGCTTGGATCCGTGCTCACGTTCCTCCTTGGCGGCCTTGAAGAAGTGC
TCGGCGAATCCAGGGCGGTTGACGGTGTCGCGGGAGAAGTAGGCGCCCAT
GGCCAAGTACTGGTAGGAGGCGTTGATCTCCTCCTGGATCTGATTGCGCA
TGCCCTTTATGCAGGCATCCTTCATGTCCACCCAGTCCTTGGTAATCTCA
GGAACAGCCAGGGAGCACTTGAAATCTCCATAGGCCTGGGCCACCACGGC
CAACAGGAGCAGGCTAGCAATTAGTTTCACCATGTCGACTGATAACT

BO08408.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG2216-PA 618 Fer1HCH-RA 1..615 633..19 3075 100 Minus
CG2216-PB 618 Fer1HCH-RB 1..615 633..19 3075 100 Minus
CG2216-PC 618 Fer1HCH-RC 1..615 633..19 3075 100 Minus
CG2216-PD 618 Fer1HCH-RD 1..615 633..19 3075 100 Minus
CG2216-PE 366 Fer1HCH-RE 1..345 633..289 1725 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:13:36
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RD 1187 CG2216-RD 159..773 633..19 3075 100 Minus
Fer1HCH-RC 1227 CG2216-RC 199..813 633..19 3075 100 Minus
Fer1HCH-RB 1135 CG2216-RB 107..721 633..19 3075 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:13:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30386319..30386596 289..566 1390 100 Plus
3R 32079331 3R 30385987..30386257 19..289 1355 100 Plus
3R 32079331 3R 30387463..30387530 566..633 340 100 Plus
Blast to na_te.dros performed on 2015-02-06 11:13:32 has no hits.

BO08408.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:17 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PD 1..618 15..633 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:40 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PD 1..618 15..633 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:57 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..725 14..633 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:31 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..725 14..633 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:31 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 30385983..30386256 14..288 99 <- Plus
3R 30386319..30386596 289..566 100 <- Plus
3R 30387464..30387530 567..633 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:57 Download gff for BO08408.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26211705..26211978 14..288 99 <- Plus
arm_3R 26212041..26212318 289..566 100 <- Plus
arm_3R 26213186..26213252 567..633 100   Plus

BO08408.5prime Sequence

647 bp (646 high quality bases) assembled on 2006-01-06

> BO08408.5prime
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACC

BO08408.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG2216-PA 618 Fer1HCH-RA 1..615 17..631 3075 100 Plus
CG2216-PB 618 Fer1HCH-RB 1..615 17..631 3075 100 Plus
CG2216-PC 618 Fer1HCH-RC 1..615 17..631 3075 100 Plus
CG2216-PD 618 Fer1HCH-RD 1..615 17..631 3075 100 Plus
CG2216-PE 366 Fer1HCH-RE 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:38:39
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RD 1187 CG2216-RD 159..773 17..631 3075 100 Plus
Fer1HCH-RC 1227 CG2216-RC 199..813 17..631 3075 100 Plus
Fer1HCH-RB 1135 CG2216-RB 107..721 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:38:32
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30386319..30386596 361..84 1390 100 Minus
3R 32079331 3R 30385987..30386257 631..361 1355 100 Minus
3R 32079331 3R 30387463..30387530 84..17 340 100 Minus
Blast to na_te.dros performed on 2015-02-04 01:38:35 has no hits.

BO08408.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:18 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PD 1..618 17..635 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:41 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2216-PD 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:01 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..725 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:59 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..725 17..636 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:59 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 30385983..30386256 362..636 99 <- Minus
3R 30386319..30386596 84..361 100 <- Minus
3R 30387464..30387530 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:01 Download gff for BO08408.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26211705..26211978 362..636 99 <- Minus
arm_3R 26212041..26212318 84..361 100 <- Minus
arm_3R 26213186..26213252 17..83 100   Minus

BO08408.complete Sequence

649 bp (649 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631178

> BO08408.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACCAT

BO08408.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:44
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RD 618 CG2216-PD 1..615 17..631 3075 100 Plus
Fer1HCH-RC 618 CG2216-PC 1..615 17..631 3075 100 Plus
Fer1HCH-RB 618 CG2216-PB 1..615 17..631 3075 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-RD 1187 CG2216-RD 159..773 17..631 3075 100 Plus
Fer1HCH-RC 1227 CG2216-RC 199..813 17..631 3075 100 Plus
Fer1HCH-RB 1135 CG2216-RB 107..721 17..631 3075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:42
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 30386319..30386596 361..84 1390 100 Minus
3R 32079331 3R 30385987..30386257 631..361 1355 100 Minus
3R 32079331 3R 30387463..30387530 84..17 340 100 Minus
Blast to na_te.dros performed on 2014-11-28 01:21:43 has no hits.

BO08408.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:27 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RC 1..618 17..635 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:47 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 371..989 17..636 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:32 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..721 17..633 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:28 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 371..989 17..636 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:58 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
Fer1HCH-RB 107..721 17..633 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:58 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
3R 30385985..30386256 362..633 99 <- Minus
3R 30386319..30386596 84..361 100 <- Minus
3R 30387464..30387530 17..83 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:32 Download gff for BO08408.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 26211707..26211978 362..633 99 <- Minus
arm_3R 26212041..26212318 84..361 100 <- Minus
arm_3R 26213186..26213252 17..83 100   Minus

BO08408.pep Sequence

Translation from 16 to 649

> BO08408.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC
ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL
FDKTLASFLDH

BO08408.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:03
Subject Length Description Subject Range Query Range Score Percent Strand
Fer1HCH-PD 205 CG2216-PD 1..205 1..205 1055 100 Plus
Fer1HCH-PC 205 CG2216-PC 1..205 1..205 1055 100 Plus
Fer1HCH-PB 205 CG2216-PB 1..205 1..205 1055 100 Plus
Fer1HCH-PA 205 CG2216-PA 1..205 1..205 1055 100 Plus
Fer1HCH-PI 245 CG2216-PI 1..245 1..205 1004 83.7 Plus