Clone Sequence Records
BO08408.3prime Sequence
647 bp (646 high quality bases) assembled on 2006-01-06
> BO08408.3prime
ATGGTCTAGAAAGCTTGCCAGGGTCTTGTCGAACAGGAACTCGCCCAGTT
CGCCGTTGGTGTCCATCATCTTCTTGAGAGTGGTCAGCTTGCCGGCGAGC
TCGCGCTGTCCGTGGAGCTGCTCCTCCAGATAGACACCGGTCAGGTAGTC
CACCAGGTGGTAGTGGTTGTAGGGCTTGTTCTCGCAGGTCTGGATCAGCT
TGCGGATGGACTTGGTCACCTTGATCTCCAGGTCGAGGGCGTCGGACAGG
GCGGCGGCACCATCGGTCCACTCCTGCTTGGCCACAGTCGGCACATTGAT
CAGATCGCTGACTCCCTCGGTCAGTTGACCGCGCATGGACAGGTACTCCA
CCAGCTTGGATCCGTGCTCACGTTCCTCCTTGGCGGCCTTGAAGAAGTGC
TCGGCGAATCCAGGGCGGTTGACGGTGTCGCGGGAGAAGTAGGCGCCCAT
GGCCAAGTACTGGTAGGAGGCGTTGATCTCCTCCTGGATCTGATTGCGCA
TGCCCTTTATGCAGGCATCCTTCATGTCCACCCAGTCCTTGGTAATCTCA
GGAACAGCCAGGGAGCACTTGAAATCTCCATAGGCCTGGGCCACCACGGC
CAACAGGAGCAGGCTAGCAATTAGTTTCACCATGTCGACTGATAACT
BO08408.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2216-PA | 618 | Fer1HCH-RA | 1..615 | 633..19 | 3075 | 100 | Minus |
CG2216-PB | 618 | Fer1HCH-RB | 1..615 | 633..19 | 3075 | 100 | Minus |
CG2216-PC | 618 | Fer1HCH-RC | 1..615 | 633..19 | 3075 | 100 | Minus |
CG2216-PD | 618 | Fer1HCH-RD | 1..615 | 633..19 | 3075 | 100 | Minus |
CG2216-PE | 366 | Fer1HCH-RE | 1..345 | 633..289 | 1725 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:13:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RD | 1187 | CG2216-RD | 159..773 | 633..19 | 3075 | 100 | Minus |
Fer1HCH-RC | 1227 | CG2216-RC | 199..813 | 633..19 | 3075 | 100 | Minus |
Fer1HCH-RB | 1135 | CG2216-RB | 107..721 | 633..19 | 3075 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:13:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386319..30386596 | 289..566 | 1390 | 100 | Plus |
3R | 32079331 | 3R | 30385987..30386257 | 19..289 | 1355 | 100 | Plus |
3R | 32079331 | 3R | 30387463..30387530 | 566..633 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 11:13:32 has no hits.
BO08408.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:17 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PD | 1..618 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:40 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PD | 1..618 | 15..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:57 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..725 | 14..633 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:31 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..725 | 14..633 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:31 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30385983..30386256 | 14..288 | 99 | <- | Plus |
3R | 30386319..30386596 | 289..566 | 100 | <- | Plus |
3R | 30387464..30387530 | 567..633 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:57 Download gff for
BO08408.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26211705..26211978 | 14..288 | 99 | <- | Plus |
arm_3R | 26212041..26212318 | 289..566 | 100 | <- | Plus |
arm_3R | 26213186..26213252 | 567..633 | 100 | | Plus |
BO08408.5prime Sequence
647 bp (646 high quality bases) assembled on 2006-01-06
> BO08408.5prime
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACC
BO08408.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2216-PA | 618 | Fer1HCH-RA | 1..615 | 17..631 | 3075 | 100 | Plus |
CG2216-PB | 618 | Fer1HCH-RB | 1..615 | 17..631 | 3075 | 100 | Plus |
CG2216-PC | 618 | Fer1HCH-RC | 1..615 | 17..631 | 3075 | 100 | Plus |
CG2216-PD | 618 | Fer1HCH-RD | 1..615 | 17..631 | 3075 | 100 | Plus |
CG2216-PE | 366 | Fer1HCH-RE | 1..345 | 17..361 | 1725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:38:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RD | 1187 | CG2216-RD | 159..773 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RC | 1227 | CG2216-RC | 199..813 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RB | 1135 | CG2216-RB | 107..721 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:38:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386319..30386596 | 361..84 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 30385987..30386257 | 631..361 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 01:38:35 has no hits.
BO08408.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:18 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PD | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:41 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2216-PD | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:43:01 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..725 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:59 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..725 | 17..636 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:59 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30385983..30386256 | 362..636 | 99 | <- | Minus |
3R | 30386319..30386596 | 84..361 | 100 | <- | Minus |
3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:43:01 Download gff for
BO08408.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26211705..26211978 | 362..636 | 99 | <- | Minus |
arm_3R | 26212041..26212318 | 84..361 | 100 | <- | Minus |
arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BO08408.complete Sequence
649 bp (649 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631178
> BO08408.complete
GAAGTTATCAGTCGACATGGTGAAACTAATTGCTAGCCTGCTCCTGTTGG
CCGTGGTGGCCCAGGCCTATGGAGATTTCAAGTGCTCCCTGGCTGTTCCT
GAGATTACCAAGGACTGGGTGGACATGAAGGATGCCTGCATAAAGGGCAT
GCGCAATCAGATCCAGGAGGAGATCAACGCCTCCTACCAGTACTTGGCCA
TGGGCGCCTACTTCTCCCGCGACACCGTCAACCGCCCTGGATTCGCCGAG
CACTTCTTCAAGGCCGCCAAGGAGGAACGTGAGCACGGATCCAAGCTGGT
GGAGTACCTGTCCATGCGCGGTCAACTGACCGAGGGAGTCAGCGATCTGA
TCAATGTGCCGACTGTGGCCAAGCAGGAGTGGACCGATGGTGCCGCCGCC
CTGTCCGACGCCCTCGACCTGGAGATCAAGGTGACCAAGTCCATCCGCAA
GCTGATCCAGACCTGCGAGAACAAGCCCTACAACCACTACCACCTGGTGG
ACTACCTGACCGGTGTCTATCTGGAGGAGCAGCTCCACGGACAGCGCGAG
CTCGCCGGCAAGCTGACCACTCTCAAGAAGATGATGGACACCAACGGCGA
ACTGGGCGAGTTCCTGTTCGACAAGACCCTGGCAAGCTTTCTAGACCAT
BO08408.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:21:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RD | 618 | CG2216-PD | 1..615 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RC | 618 | CG2216-PC | 1..615 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RB | 618 | CG2216-PB | 1..615 | 17..631 | 3075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-RD | 1187 | CG2216-RD | 159..773 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RC | 1227 | CG2216-RC | 199..813 | 17..631 | 3075 | 100 | Plus |
Fer1HCH-RB | 1135 | CG2216-RB | 107..721 | 17..631 | 3075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:21:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 30386319..30386596 | 361..84 | 1390 | 100 | Minus |
3R | 32079331 | 3R | 30385987..30386257 | 631..361 | 1355 | 100 | Minus |
3R | 32079331 | 3R | 30387463..30387530 | 84..17 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:21:43 has no hits.
BO08408.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:05:27 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RC | 1..618 | 17..635 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:24:47 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 371..989 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:47:32 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..721 | 17..633 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:05:28 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 371..989 | 17..636 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:51:58 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fer1HCH-RB | 107..721 | 17..633 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:51:58 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 30385985..30386256 | 362..633 | 99 | <- | Minus |
3R | 30386319..30386596 | 84..361 | 100 | <- | Minus |
3R | 30387464..30387530 | 17..83 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:47:32 Download gff for
BO08408.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 26211707..26211978 | 362..633 | 99 | <- | Minus |
arm_3R | 26212041..26212318 | 84..361 | 100 | <- | Minus |
arm_3R | 26213186..26213252 | 17..83 | 100 | | Minus |
BO08408.pep Sequence
Translation from 16 to 649
> BO08408.pep
MVKLIASLLLLAVVAQAYGDFKCSLAVPEITKDWVDMKDACIKGMRNQIQ
EEINASYQYLAMGAYFSRDTVNRPGFAEHFFKAAKEEREHGSKLVEYLSM
RGQLTEGVSDLINVPTVAKQEWTDGAAALSDALDLEIKVTKSIRKLIQTC
ENKPYNHYHLVDYLTGVYLEEQLHGQRELAGKLTTLKKMMDTNGELGEFL
FDKTLASFLDH
BO08408.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:58:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fer1HCH-PD | 205 | CG2216-PD | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PC | 205 | CG2216-PC | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PB | 205 | CG2216-PB | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PA | 205 | CG2216-PA | 1..205 | 1..205 | 1055 | 100 | Plus |
Fer1HCH-PI | 245 | CG2216-PI | 1..245 | 1..205 | 1004 | 83.7 | Plus |