Clone Sequence Records
BO08411.3prime Sequence
869 bp (863 high quality bases) assembled on 2006-01-06
> BO08411.3prime
ATGGTCTAGAAAGCTTGCAGTCTGAACGGAGATCCGCTCCAGTCGGGGAG
CGCTGCGGAACTTGGTCCACCACCAGAACCAGGCGCACGAAAATCCCACA
GCCAAGGTGGTGTAATACAAAATAGTAGCCAGGCTCCACTTCTTCTTCTT
GTGACTCTCGTTGCCCTGCACTTTCTTCTGGCTCCTTGCGTTCTGGGCAT
TAGCTTCGATTTTCGCGAGATCCTTGGCAATCTCTTCGGTGATCTGATTC
ACGCTTTTTAGAGTTTCCTGGGCAAAGCAGCTGGCATATCGTTTGTCGCC
CACCACGACGTCCTCGGGAGTGGAGACCTGCAGCTTGTAGTTGGTGGCCG
CTAAAGAAGCGCGCAGGGACATAAAGTGGTTGCCAGCATTGCCCAGAATC
TGATTGTTGTAGTTTTCGGCTTCAGGATGGTTGCAAATGTATTCGTAACT
GGGATTCTGGTTGGGAATCTTTTCGAACATCTCCAGGAGCTGTTGCCGTT
GCTTTCGACACTTGAACCCGAAGAGTTCCAAATCTTCGTCGGTGAGAGAG
GCCAAATCCAGATAGTTAATGTTCTCGGCAATAAGTTTGTCCACACAGGT
GCTGGCGTAGTCCGTTTCCACGCTGGTAGAGCACAGTAGACCGTTGAGGA
TCTCCCTCTCCCGGCGTGTGTCCCTGTGAGCCTTTTGGCGAACCCAAGGA
CGTCGATTGTAGCCCAGGAAAGCACTGTCCAATTCCTTCTGCTCGGTGTG
CGAGTGAAAGTTCTTTGTGGCCTCAAACTGAATGGTCGGCGGAACCTTGG
CCATCGCCACCAAGGGGACATCCCCCGCGGACATTGTGTGCGTCTTCGTT
GCCATGTCGACTGATAACT
BO08411.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-PA | 840 | CG10880-RA | 1..837 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:44:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-RA | 1285 | CG10880-RA | 87..923 | 855..19 | 4185 | 100 | Minus |
| CG10880-RB | 1282 | CG10880-RB | 87..920 | 855..19 | 4130 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:44:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2215515..2216225 | 145..855 | 3555 | 100 | Plus |
| 2L | 23513712 | 2L | 2215334..2215461 | 19..146 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-03 11:44:15 has no hits.
BO08411.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:23 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-PA | 1..840 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:48 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-PA | 1..840 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:43:02 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 82..926 | 15..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:45 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 82..926 | 15..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:45 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2215330..2215459 | 15..144 | 98 | <- | Plus |
| 2L | 2215515..2216230 | 145..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:43:02 Download gff for
BO08411.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2215330..2215459 | 15..144 | 98 | <- | Plus |
| arm_2L | 2215515..2216230 | 145..862 | 99 | | Plus |
BO08411.5prime Sequence
865 bp (776 high quality bases) assembled on 2006-01-06
> BO08411.5prime
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTGCAAGCTTTCTA
BO08411.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-PA | 840 | CG10880-RA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-RA | 1285 | CG10880-RA | 87..923 | 17..853 | 4185 | 100 | Plus |
| CG10880-RB | 1282 | CG10880-RB | 87..920 | 17..853 | 4130 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2215515..2216225 | 727..17 | 3555 | 100 | Minus |
| 2L | 23513712 | 2L | 2215334..2215461 | 853..726 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:04:45 has no hits.
BO08411.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:24 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:49 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-PA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:29 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 82..926 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:56:19 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 82..926 | 10..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:56:19 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2215330..2215459 | 728..857 | 98 | <- | Minus |
| 2L | 2215515..2216230 | 10..727 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:29 Download gff for
BO08411.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2215330..2215459 | 728..857 | 98 | <- | Minus |
| arm_2L | 2215515..2216230 | 10..727 | 99 | | Minus |
BO08411.complete Sequence
871 bp (871 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631179
> BO08411.complete
GAAGTTATCAGTCGACATGGCAACGAAGACGCACACAATGTCCGCGGGGG
ATGTCCCCTTGGTGGCGATGGCCAAGGTTCCGCCGACCATTCAGTTTGAG
GCCACAAAGAACTTTCACTCGCACACCGAGCAGAAGGAATTGGACAGTGC
TTTCCTGGGCTACAATCGACGTCCTTGGGTTCGCCAAAAGGCTCACAGGG
ACACACGCCGGGAGAGGGAGATCCTCAACGGTCTACTGTGCTCTACCAGC
GTGGAAACGGACTACGCCAGCACCTGTGTGGACAAACTTATTGCCGAGAA
CATTAACTATCTGGATTTGGCCTCTCTCACCGACGAAGATTTGGAACTCT
TCGGGTTCAAGTGTCGAAAGCAACGGCAACAGCTCCTGGAGATGTTCGAA
AAGATTCCCAACCAGAATCCCAGTTACGAATACATTTGCAACCATCCTGA
AGCCGAAAACTACAACAATCAGATTCTGGGCAATGCTGGCAACCACTTTA
TGTCCCTGCGCGCTTCTTTAGCGGCCACCAACTACAAGCTGCAGGTCTCC
ACTCCCGAGGACGTCGTGGTGGGCGACAAACGATATGCCAGCTGCTTTGC
CCAGGAAACTCTAAAAAGCGTGAATCAGATCACCGAAGAGATTGCCAAGG
ATCTCGCGAAAATCGAAGCTAATGCCCAGAACGCAAGGAGCCAGAAGAAA
GTGCAGGGCAACGAGAGTCACAAGAAGAAGAAGTGGAGCCTGGCTACTAT
TTTGTATTACACCACCTTGGCTGTGGGATTTTCGTGCGCCTGGTTCTGGT
GGTGGACCAAGTTCCGCAGCGCTCCCCGACTGGAGCGGATCTCCGTTCAG
ACTGCAAGCTTTCTAGACCAT
BO08411.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-RA | 840 | CG10880-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
| CG10880-RB | 837 | CG10880-PB | 1..834 | 17..853 | 4105 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:04:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-RA | 1285 | CG10880-RA | 87..923 | 17..853 | 4185 | 100 | Plus |
| CG10880-RB | 1282 | CG10880-RB | 87..920 | 17..853 | 4105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2215515..2216225 | 727..17 | 3555 | 100 | Minus |
| 2L | 23513712 | 2L | 2215334..2215461 | 853..726 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:04:29 has no hits.
BO08411.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:11:17 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 1..840 | 17..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:32:03 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 69..913 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:02:48 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 87..923 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:11:18 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 69..913 | 10..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:14:11 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10880-RA | 87..923 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:14:11 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2215332..2215459 | 728..855 | 98 | <- | Minus |
| 2L | 2215515..2216225 | 17..727 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:02:48 Download gff for
BO08411.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2215332..2215459 | 728..855 | 98 | <- | Minus |
| arm_2L | 2215515..2216225 | 17..727 | 100 | | Minus |
BO08411.pep Sequence
Translation from 16 to 871
> BO08411.pep
MATKTHTMSAGDVPLVAMAKVPPTIQFEATKNFHSHTEQKELDSAFLGYN
RRPWVRQKAHRDTRREREILNGLLCSTSVETDYASTCVDKLIAENINYLD
LASLTDEDLELFGFKCRKQRQQLLEMFEKIPNQNPSYEYICNHPEAENYN
NQILGNAGNHFMSLRASLAATNYKLQVSTPEDVVVGDKRYASCFAQETLK
SVNQITEEIAKDLAKIEANAQNARSQKKVQGNESHKKKKWSLATILYYTT
LAVGFSCAWFWWWTKFRSAPRLERISVQTASFLDH
BO08411.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10880-PA | 279 | CG10880-PA | 1..279 | 1..279 | 1468 | 100 | Plus |
| CG10880-PB | 278 | CG10880-PB | 1..278 | 1..279 | 1451 | 99.6 | Plus |
