Clone Sequence Records
BO08414.3prime Sequence
960 bp (858 high quality bases) assembled on 2006-01-06
> BO08414.3prime
ATGGTCTAGAAAGCTTGCCTTCCGTTTGAGGTAATCTTCGTAGAGTTTCA
ACAACTCTGGAGAAGTCCGCGGAGGCACCGCCTTCAAGGCGTGCTCGAAG
TCCGTCCACTTGACATCCTCCGCTTCGAAGCTTTGCTCCAGGGCTCTCAG
GGCAGCCTCATGGCATACGGCTTGTATTTCTGCACCGGAATATCCCTCCG
TCAGCTGCACCAACTTCTCCATGTCCACATCGTTTGATATCGGCATGGCA
CGCAGTTTGATCTTTAAGATCTCTCTACGTGCTTCACATTGCGGTAGTCC
CACGTAGAGAATTCGATCAATTCGGCCTGGACGAAGCAGTGCCTTGTCGA
TCATATCTGGACGATTGGTGGCAGCGACTATGGTGACATTTTGCAGTGCC
TCCACGCCATCCAGTTCGGTGAGCAGTTGCGTGAGGACGCGCTCTTTTAC
GGACGAACCAGAGCTGGATCCGTCGCCCTCCGAACGCTCGCCACCGATGG
CGTCGATTTCGTCGAAGAAAACTATGGCGGGTGCCACCTGGCGAGCCTTT
CGAAAGACCTCACGCACCGCTCGCTCCGATTCGCCCACCCACATGGAAAA
GAGCTCTGGTCCCTTGATGGACAGAAAATTAAGCTTGCTCTCGGTGGCCA
GGGCCTTGGCAATCATGGTTTTCGAGCAGCCTGGCGGTCCAAACATGAGG
ATACCCCTGGGTGGCTTGATACCCAGGCGTTGGAACTTATCCGCGTGCAG
CAGTGGCCACTCGATGGCCTGCTGCATGGCCAAACGTAGCTCGGATTGAC
CGCCAATGTCGGACCACTGCACATTGGGACACTCGATGAGAACTTCACGC
ATCGCCGATGGTTTTATGCGGGTCAAAGCCGCCTGTAGATGCGGCATCTG
TAGAGGATTCGGTTGCGCCTGCAGCATGGCAGCGTAAACGAGATTTTGCT
AGTCTGCTCC
BO08414.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PA | 2400 | CG5776-RA | 1470..2397 | 946..19 | 4615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 1507..2448 | 960..19 | 4650 | 99.7 | Minus |
| CG5776-RA | 2912 | CG5776-RA | 1507..2448 | 960..19 | 4650 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12701893..12702834 | 19..960 | 4635 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:08:27 has no hits.
BO08414.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:27 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1456..2400 | 18..960 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:53 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1456..2400 | 18..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:56 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 1507..2454 | 11..960 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:25 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 1507..2454 | 11..960 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:25 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12701887..12702834 | 11..960 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:56 Download gff for
BO08414.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12701887..12702834 | 11..960 | 99 | | Plus |
BO08414.5prime Sequence
904 bp (836 high quality bases) assembled on 2006-01-06
> BO08414.5prime
GAAGTTATCAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGG
TTACTTGGTACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCG
AGAGATAACCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGG
TCCCGATTCTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAA
GTCTTCAACAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACC
AAGTATGCCAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGC
ACAGCTACACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGG
AGCAGCCGCTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACC
ACAGTATTTGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCG
AGGAAAGCTACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGG
CTGCCAGCATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAG
TCAGTACAACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAA
TCGGGTATTCTACAAGGACAGTCTGATCCACATGAATTTCTTTAACAAAT
CGCTGACTTTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTA
GCTGGTCTGAGTCTCGACTCCAAACCCTTGCAGTTCATCCAGGTTACCAA
CGTAACCAAGCTCCACCTGATAACCGACGATGCAAATCAGCAGGAGGAGG
AGCAAAAAATAAGTCACAGGATCACCAAATGCCAAATANGCGGGCTGGAT
AGGCAATTGCAACTGGTTGAGGAGAGTATGGAGTACGCTTTGGGATTCCG
AACG
BO08414.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PA | 2400 | CG5776-RA | 1..888 | 17..904 | 4421 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..939 | 13..904 | 4434 | 99.8 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..939 | 13..904 | 4434 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12703455..12703937 | 904..422 | 2404 | 99.8 | Minus |
| 2L | 23513712 | 2L | 12703995..12704404 | 422..13 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-12 05:50:06 has no hits.
BO08414.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:28 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:54 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-PA | 1..888 | 17..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 02:59:26 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..939 | 9..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:56:28 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 45..939 | 9..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:56:28 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12703455..12703936 | 423..904 | 99 | <- | Minus |
| 2L | 12703995..12704407 | 9..422 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 02:59:26 Download gff for
BO08414.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12703455..12703936 | 423..904 | 99 | <- | Minus |
| arm_2L | 12703995..12704407 | 9..422 | 99 | | Minus |
BO08414.complete Sequence
2431 bp (2431 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631180
> BO08414.complete
GAAGTTATCAGTCGACATGCCGCCAAAGTCAAGCAGCAAGAAAAACCAGG
TTACTTGGTACCACTGCGAGTCCTGCGGCGTCCACATTCCCTCGAAAGCG
AGAGATAACCACGAGGGCTTATGCTTCGCCATCAGCCAGGATGATGTTGG
TCCCGATTCTGAGGCGGAGTACGTTCGCAGTGGAGCAATCTATACGAGAA
GTCTTCAACAGCGTAATTTCGAGGTGGAGTCTCTGAAGGATCTGCCCACC
AAGTATGCCAATATGCTAGTCTTCGTCTCCGAGGGTGCGATGCAATTGGC
ACAGCTACACATTGGACAACATGTGGTGCTGGAAGCTCCATCGACGGCGG
AGCAGCCGCTGGTTAGGATTGTATGGCCCACATCAGAGCAATTCCTCACC
ACAGTATTTGTGAGCGAAGGGGATTTCAAACTCCATTGCACACAACTTCG
AGGAAAGCTACTCAAGATCTCTGCCTTGCATCCCAGTCGCCTCACTGCGG
CTGCCAGCATTTCCCTGAAGCATGTAAACACCACAGAGACCTCCCTGAAG
TCAGTACAACTGCAGGACGCCATTGCCCTTCTCAAAAGAGACATGGTCAA
TCGGGTATTCTACAAGGACAGTCTGATCCACATGAATTTCTTTAACAAAT
CGCTGACTTTTCGCCTGGAGCGATGGCAGAGCACAGTGGAAGAGGCTCTA
GCTGGTCTGAGTCTCGACTCCAAACCCTTGCAGTTCATCCAGGTTACCAA
CGTAACCAAGCTCCACCTGATAACCGACGATGCAAATCAGCAGGAGGAGG
AGCAAAAAATAAGTCACAGGATCACCAAATGCCAAATAGGCGGGCTGGAT
AGGCAATTGCAACTGGTTGAGGAGAGTATGGAGTACGCTTTGGGATTCCG
AACGTTGCCTGCAGGCCTTAGGGTTTCCCGCGGACTGCTTCTCTATGGCG
CCACTGGCTGTGGCAAGTCCATGGTGCTGGAAGCCATGTGCGCAGTGGCC
GAGGAACGTAGCCAAGGACATGTCCAGCTTATACGCATAAACAGCGGCGA
AGTGTACAGCAAATTCCTGGGCGAAACGGAACAGAAACTTGGTGCTATAT
TTGAGCGTGCCTACAATCACTATCCGCATCCAACGTTGCTGCTGATTGAG
GATGTGCACAACTTGTGTCCCAAGCAAGAAAACAGCGATCTTGTCAAGCG
CGTCTCATTGGCATTCTTATCCCTGCTGGATCAGCTAAGCTCTCCCAGCC
AGCTAAAGGGAAGCAAAACATTTGTCCTGGCCACTAGTTCTCAGATTGAT
ACCCTGCATCCGAGCATTCGGCGAGCTGGTCGATTGGACAATGAAGTGGA
GTTGGGTGCACCCAGCTCTCAGGCAAGGCTGGAAATTGTACGATGCCTCA
TCAAGTCAGTGGAGCATCAGTTGAGCGATGAGGAAGTGGAGCACGTTGCA
TCTATTACCCATGGCTACGTGGGAGCAGACTTAGCAAATCTCGTTTACGC
TGCCATGCTGCAGGCGCAACCGAATCCTCTACAGATGCCGCATCTACAGG
CGGCTTTGACCCGCATTAAACCATCGGCGATGCGTGAAGTTCTCATCGAG
TGTCCCAATGTGCAGTGGTCCGACATTGGCGGTCAATCCGAGCTACGTTT
GGCCATGCAGCAGGCCATCGAGTGGCCACTGCTGCACGCGGATAAGTTCC
AACGCCTGGGTATCAAGCCACCCAGGGGTATCCTCATGTTTGGACCGCCA
GGCTGCTCGAAAACCATGATTGCCAAGGCCCTGGCCACCGAGAGCAAGCT
TAATTTTCTGTCCATCAAGGGACCAGAGCTCTTTTCCATGTGGGTGGGCG
AATCGGAGCGAGCGGTGCGTGAGGTCTTTCGAAAGGCTCGCCAGGTGGCA
CCCGCCATAGTTTTCTTCGACGAAATCGACGCCATCGGTGGCGAGCGTTC
GGAGGGCGACGGATCCAGCTCTGGTTCGTCCGTAAAAGAGCGCGTCCTCA
CGCAACTGCTCACCGAACTGGATGGCGTGGAGGCACTGCAAAATGTCACC
ATAGTCGCTGCCACCAATCGTCCAGATATGATCGACAAGGCACTGCTTCG
TCCAGGCCGAATTGATCGAATTCTCTACGTGGGACTACCGCAATGTGAAG
CACGTAGAGAGATCTTAAAGATCAAACTGCGTGCCATGCCGATATCAAAC
GATGTGGACATGGAGAAGTTGGTGCAGCTGACGGAGGGATATTCCGGTGC
AGAAATACAAGCCGTATGCCATGAGGCTGCCCTGAGAGCCCTGGAGCAAA
GCTTCGAAGCGGAGGATGTCAAGTGGACGGACTTCGAGCACGCCTTGAAG
GCGGTGCCTCCGCGGACTTCTCCAGAGTTGTTGAAACTCTACGAAGATTA
CCTCAAACGGAAGGCAAGCTTTCTAGACCAT
BO08414.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 2400 | CG5776-PB | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| CG5776-RA | 2400 | CG5776-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-RB | 3392 | CG5776-RB | 48..2448 | 13..2413 | 11990 | 100 | Plus |
| CG5776-RA | 2912 | CG5776-RA | 48..2448 | 13..2413 | 11990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12701893..12703393 | 2413..913 | 7505 | 100 | Minus |
| 2L | 23513712 | 2L | 12703444..12703937 | 915..422 | 2470 | 100 | Minus |
| 2L | 23513712 | 2L | 12703995..12704404 | 422..13 | 2035 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:34:40 has no hits.
BO08414.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:51 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 1..2400 | 17..2414 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:19:15 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 17..2426 | 9..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:57:19 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 52..2448 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:51 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 17..2426 | 9..2421 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:28:12 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5776-RA | 52..2448 | 17..2415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:28:12 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12701891..12703391 | 915..2415 | 99 | <- | Minus |
| 2L | 12703445..12703936 | 423..914 | 100 | <- | Minus |
| 2L | 12703995..12704400 | 17..422 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:57:19 Download gff for
BO08414.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12701891..12703391 | 915..2415 | 99 | <- | Minus |
| arm_2L | 12703445..12703936 | 423..914 | 100 | <- | Minus |
| arm_2L | 12703995..12704400 | 17..422 | 100 | | Minus |
BO08414.pep Sequence
Translation from 16 to 2431
> BO08414.pep
MPPKSSSKKNQVTWYHCESCGVHIPSKARDNHEGLCFAISQDDVGPDSEA
EYVRSGAIYTRSLQQRNFEVESLKDLPTKYANMLVFVSEGAMQLAQLHIG
QHVVLEAPSTAEQPLVRIVWPTSEQFLTTVFVSEGDFKLHCTQLRGKLLK
ISALHPSRLTAAASISLKHVNTTETSLKSVQLQDAIALLKRDMVNRVFYK
DSLIHMNFFNKSLTFRLERWQSTVEEALAGLSLDSKPLQFIQVTNVTKLH
LITDDANQQEEEQKISHRITKCQIGGLDRQLQLVEESMEYALGFRTLPAG
LRVSRGLLLYGATGCGKSMVLEAMCAVAEERSQGHVQLIRINSGEVYSKF
LGETEQKLGAIFERAYNHYPHPTLLLIEDVHNLCPKQENSDLVKRVSLAF
LSLLDQLSSPSQLKGSKTFVLATSSQIDTLHPSIRRAGRLDNEVELGAPS
SQARLEIVRCLIKSVEHQLSDEEVEHVASITHGYVGADLANLVYAAMLQA
QPNPLQMPHLQAALTRIKPSAMREVLIECPNVQWSDIGGQSELRLAMQQA
IEWPLLHADKFQRLGIKPPRGILMFGPPGCSKTMIAKALATESKLNFLSI
KGPELFSMWVGESERAVREVFRKARQVAPAIVFFDEIDAIGGERSEGDGS
SSGSSVKERVLTQLLTELDGVEALQNVTIVAATNRPDMIDKALLRPGRID
RILYVGLPQCEARREILKIKLRAMPISNDVDMEKLVQLTEGYSGAEIQAV
CHEAALRALEQSFEAEDVKWTDFEHALKAVPPRTSPELLKLYEDYLKRKA
SFLDH
BO08414.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:45:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5776-PB | 799 | CG5776-PB | 1..799 | 1..799 | 4062 | 100 | Plus |
| CG5776-PA | 799 | CG5776-PA | 1..799 | 1..799 | 4062 | 100 | Plus |
| TER94-PD | 759 | CG2331-PD | 142..661 | 255..766 | 974 | 37.3 | Plus |
| TER94-PA | 801 | CG2331-PA | 184..703 | 255..766 | 974 | 37.3 | Plus |
| TER94-PE | 825 | CG2331-PE | 209..728 | 255..766 | 974 | 37.3 | Plus |
| TER94-PD | 759 | CG2331-PD | 156..388 | 532..769 | 501 | 41.2 | Plus |
| TER94-PA | 801 | CG2331-PA | 198..430 | 532..769 | 501 | 41.2 | Plus |
