Clone Sequence Records
BO08416.3prime Sequence
946 bp (878 high quality bases) assembled on 2006-01-06
> BO08416.3prime
ATGGTCTAGAAAGCTTGCATTGAAGTGGAACTTGAACTGGAACGGCGACC
CGTGTTGGAAGTGTCCAAACGGATGTTCGCCATGGAAGCCGCCACGCTGA
TTGCTCTCAGGATCTAATGGATCCTCGCCGTTGTCGAATTGACGACGCTT
CTCGGGATCCGTGAGAACCTCCTTGGCTGCGGCAATGTCAATAAACTTTT
TCTCGGCCACCTTCTTTTCCTCGTCGCGGAAGTTGTCCGGATGCCACTTT
TGCGCCGCCTTCCTGTAGGCCTTCACAATCTCCTGTTTGCTGGCGCTACG
CTTAACGCCTAATATCTTATAGTAATCCCTGCGCTCTGACTGCTTCTGCA
GCTTCTTTGCCCTCTGGATGCCTTCTTTAGCGCGGGTGTTGCTCTCTTCC
AGGTCGAGAGCTGCTTGGAAGGAGTGTATGGCATCGTCGTACATTTCGGT
GCCCAGCAATGCGTCAGCACGATCACAGTAGACCTGAGCATCCTTCATAA
TATCCAGTGCCTCCTTGCACTGTTGCAAAGCCTTGCCAAACTGCTCGTCG
CCCGTGTAGCAAGTGCAGAGCACCTTGTGTCCCTCATACCGGATCATCGT
CTCCTCCGGCTCGTTACGCAGGACTGCCTCTCCGGCGGCTATGCACTCGG
CAAAATGCTTCTCCTCACGCGCTTGCTCTGCGTTAACCAGCTGCTTTTCC
ACCTTTCGTAGTTTCTTGTAGAAGGGGAAGCAGAGCTTGTGTTCCGGGTC
GAACTTCAGGCACTCGCGGATCTCTTTTAAGGCATTTGTGGCGTGGCCAA
TTGTGTACAGCAGCTGTGCAATCTTGTAGTGACCCTCAGTGCTGTCCTGG
GTGAGTCGGTTCACCTGTCGCAAGTCAGCAATGGCTAACAGTGGATCATT
GATTGCAATGTAGGCATCAGAGCGAGCCTGCCGGAAGGGCACAGCC
BO08416.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8286-PA | 1497 | CG8286-RA | 567..1494 | 946..19 | 4640 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 988..1915 | 946..19 | 4640 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9588352..9589279 | 946..19 | 4640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 12:06:08 has no hits.
BO08416.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:31 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 567..1497 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:58 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 567..1497 | 18..946 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:20 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 988..1915 | 19..946 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:46 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 988..1915 | 19..946 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:46 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9588352..9589279 | 19..946 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:20 Download gff for
BO08416.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5414074..5415001 | 19..946 | 100 | | Minus |
BO08416.5prime Sequence
778 bp (360 high quality bases) assembled on 2006-01-06
> BO08416.5prime
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGAGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCACGACAGCACTGAGGGTCAC
TACNAGATTGCACAGCTGCTGTACACAATTGGACACGCCACATATGCCTT
ATAAGAGATCCGCGAGTGCCTGAAGTTC
BO08416.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8286-PA | 1497 | CG8286-RA | 1..762 | 17..778 | 3616 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 417..1183 | 12..778 | 3704 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9587996..9588547 | 227..778 | 2644 | 98.6 | Plus |
3R | 32079331 | 3R | 9587521..9587636 | 112..227 | 580 | 100 | Plus |
3R | 32079331 | 3R | 9587358..9587460 | 12..114 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:10:07 has no hits.
BO08416.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:31 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 1..762 | 17..778 | 98 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:00 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8286-PA | 1..762 | 17..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:21:00 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 415..1183 | 9..778 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:11 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 415..1183 | 9..778 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:11 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9587356..9587459 | 9..113 | 98 | -> | Plus |
3R | 9587523..9587636 | 114..227 | 100 | -> | Plus |
3R | 9587997..9588547 | 228..778 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:21:00 Download gff for
BO08416.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5413078..5413181 | 9..113 | 98 | -> | Plus |
arm_3R | 5413245..5413358 | 114..227 | 100 | -> | Plus |
arm_3R | 5413719..5414269 | 228..778 | 98 | | Plus |
BO08416.complete Sequence
1528 bp (1528 high quality bases) assembled on 2006-08-21
GenBank Submission: FJ631181
> BO08416.complete
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCAGGACAGCACTGAGGGTCAC
TACAAGATTGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTT
AAAAGAGATCCGCGAGTGCCTGAAGTTCGACCCGGAACACAAGCTCTGCT
TCCCCTTCTACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCA
GAGCAAGCGCGTGAGGAGAAGCATTTTGCCGAGTGCATAGCCGCCGGAGA
GGCAGTCCTGCGTAACGAGCCGGAGGAGACGATGATCCGGTATGAGGGAC
ACAAGGTGCTCTGCACTTGCTACACGGGCGACGAGCAGTTTGGCAAGGCT
TTGCAACAGTGCAAGGAGGCACTGGATATTATGAAGGATGCTCAGGTCTA
CTGTGATCGTGCTGACGCATTGCTGGGCACCGAAATGTACGACGATGCCA
TACACTCCTTCCAAGCAGCTCTCGACCTGGAAGAGAGCAACACCCGCGCT
AAAGAAGGCATCCAGAGGGCAAAGAAGCTGCAGAAGCAGTCAGAGCGCAG
GGATTACTATAAGATATTAGGCGTTAAGCGTAGCGCCAGCAAACAGGAGA
TTGTGAAGGCCTACAGGAAGGCGGCGCAAAAGTGGCATCCGGACAACTTC
CGCGACGAGGAAAAGAAGGTGGCCGAGAAAAAGTTTATTGACATTGCCGC
AGCCAAGGAGGTTCTCACGGATCCCGAGAAGCGTCGTCAATTCGACAACG
GCGAGGATCCATTAGATCCTGAGAGCAATCAGCGTGGCGGCTTCCATGGC
GAACATCCGTTTGGACACTTCCAACACGGGTCGCCGTTCCAGTTCAAGTT
CCACTTCAATGCAAGCTTTCTAGACCAT
BO08416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 1497 | CG8286-PA | 1..1494 | 17..1510 | 7440 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-RA | 2217 | CG8286-RA | 417..1915 | 12..1510 | 7450 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9587996..9589279 | 227..1510 | 6390 | 99.8 | Plus |
3R | 32079331 | 3R | 9587521..9587636 | 112..227 | 580 | 100 | Plus |
3R | 32079331 | 3R | 9587358..9587460 | 12..114 | 500 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:32:45 has no hits.
BO08416.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:13 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 1..1497 | 17..1511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:34 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 418..1918 | 9..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:39 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 422..1915 | 17..1512 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:14 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 418..1918 | 9..1510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:26 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
P58IPK-RA | 422..1915 | 17..1512 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:26 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9587523..9587636 | 114..227 | 100 | -> | Plus |
3R | 9587363..9587459 | 17..113 | 100 | -> | Plus |
3R | 9587997..9589279 | 228..1512 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:39 Download gff for
BO08416.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5413085..5413181 | 17..113 | 100 | -> | Plus |
arm_3R | 5413245..5413358 | 114..227 | 100 | -> | Plus |
arm_3R | 5413719..5415001 | 228..1512 | 99 | | Plus |
BO08416.pep Sequence
Translation from 16 to 1528
> BO08416.pep
MALPLSDLLMIGGGEKKLAACLVLLLLELFLEGAESTASPADIENHLELG
KEFLARGQLSDALTHYHAAVEGDANNYLTLFKRGTVYLALGKTRFAVQDF
SRVLELKPDFMAARIQRGVVHMKSGEYEQAIQDFDQVLQEEPNNGLVLEH
YSRLAPAQEQWVLVQQLIQYSDHQNAIPMITQLLEISPWAVPFRQARSDA
YIAINDPLLAIADLRQVNRLTQDSTEGHYKIAQLLYTIGHATNALKEIRE
CLKFDPEHKLCFPFYKKLRKVEKQLVNAEQAREEKHFAECIAAGEAVLRN
EPEETMIRYEGHKVLCTCYTGDEQFGKALQQCKEALDIMKDAQVYCDRAD
ALLGTEMYDDAIHSFQAALDLEESNTRAKEGIQRAKKLQKQSERRDYYKI
LGVKRSASKQEIVKAYRKAAQKWHPDNFRDEEKKVAEKKFIDIAAAKEVL
TDPEKRRQFDNGEDPLDPESNQRGGFHGEHPFGHFQHGSPFQFKFHFNAS
FLDH
BO08416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
P58IPK-PA | 498 | CG8286-PA | 1..498 | 1..498 | 2592 | 100 | Plus |
Tpr2-PC | 478 | CG4599-PC | 1..478 | 25..495 | 289 | 22.7 | Plus |
Tpr2-PE | 464 | CG4599-PE | 6..464 | 44..495 | 271 | 22.6 | Plus |
Tpr2-PB | 464 | CG4599-PB | 6..464 | 44..495 | 271 | 22.6 | Plus |
Tpr2-PD | 508 | CG4599-PD | 50..508 | 44..495 | 271 | 22.6 | Plus |