Clone BO08416 Report

Search the DGRC for BO08416

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptP58IPK-RA
Protein status:BO08416.pep: validated full length
Sequenced Size:1528

Clone Sequence Records

BO08416.3prime Sequence

946 bp (878 high quality bases) assembled on 2006-01-06

> BO08416.3prime
ATGGTCTAGAAAGCTTGCATTGAAGTGGAACTTGAACTGGAACGGCGACC
CGTGTTGGAAGTGTCCAAACGGATGTTCGCCATGGAAGCCGCCACGCTGA
TTGCTCTCAGGATCTAATGGATCCTCGCCGTTGTCGAATTGACGACGCTT
CTCGGGATCCGTGAGAACCTCCTTGGCTGCGGCAATGTCAATAAACTTTT
TCTCGGCCACCTTCTTTTCCTCGTCGCGGAAGTTGTCCGGATGCCACTTT
TGCGCCGCCTTCCTGTAGGCCTTCACAATCTCCTGTTTGCTGGCGCTACG
CTTAACGCCTAATATCTTATAGTAATCCCTGCGCTCTGACTGCTTCTGCA
GCTTCTTTGCCCTCTGGATGCCTTCTTTAGCGCGGGTGTTGCTCTCTTCC
AGGTCGAGAGCTGCTTGGAAGGAGTGTATGGCATCGTCGTACATTTCGGT
GCCCAGCAATGCGTCAGCACGATCACAGTAGACCTGAGCATCCTTCATAA
TATCCAGTGCCTCCTTGCACTGTTGCAAAGCCTTGCCAAACTGCTCGTCG
CCCGTGTAGCAAGTGCAGAGCACCTTGTGTCCCTCATACCGGATCATCGT
CTCCTCCGGCTCGTTACGCAGGACTGCCTCTCCGGCGGCTATGCACTCGG
CAAAATGCTTCTCCTCACGCGCTTGCTCTGCGTTAACCAGCTGCTTTTCC
ACCTTTCGTAGTTTCTTGTAGAAGGGGAAGCAGAGCTTGTGTTCCGGGTC
GAACTTCAGGCACTCGCGGATCTCTTTTAAGGCATTTGTGGCGTGGCCAA
TTGTGTACAGCAGCTGTGCAATCTTGTAGTGACCCTCAGTGCTGTCCTGG
GTGAGTCGGTTCACCTGTCGCAAGTCAGCAATGGCTAACAGTGGATCATT
GATTGCAATGTAGGCATCAGAGCGAGCCTGCCGGAAGGGCACAGCC

BO08416.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8286-PA 1497 CG8286-RA 567..1494 946..19 4640 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 988..1915 946..19 4640 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:06:04
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9588352..9589279 946..19 4640 100 Minus
Blast to na_te.dros performed on 2015-02-12 12:06:08 has no hits.

BO08416.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:31 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 567..1497 18..946 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:40:58 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 567..1497 18..946 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:20 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 988..1915 19..946 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:46 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 988..1915 19..946 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:46 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9588352..9589279 19..946 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:20 Download gff for BO08416.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5414074..5415001 19..946 100   Minus

BO08416.5prime Sequence

778 bp (360 high quality bases) assembled on 2006-01-06

> BO08416.5prime
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGAGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCACGACAGCACTGAGGGTCAC
TACNAGATTGCACAGCTGCTGTACACAATTGGACACGCCACATATGCCTT
ATAAGAGATCCGCGAGTGCCTGAAGTTC

BO08416.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8286-PA 1497 CG8286-RA 1..762 17..778 3616 98.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:10:10
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 417..1183 12..778 3704 98.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:10:05
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9587996..9588547 227..778 2644 98.6 Plus
3R 32079331 3R 9587521..9587636 112..227 580 100 Plus
3R 32079331 3R 9587358..9587460 12..114 500 99 Plus
Blast to na_te.dros performed on 2015-02-13 00:10:07 has no hits.

BO08416.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:31 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 1..762 17..778 98   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:00 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8286-PA 1..762 17..778 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:21:00 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 415..1183 9..778 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:11 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 415..1183 9..778 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:11 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9587356..9587459 9..113 98 -> Plus
3R 9587523..9587636 114..227 100 -> Plus
3R 9587997..9588547 228..778 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:21:00 Download gff for BO08416.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5413078..5413181 9..113 98 -> Plus
arm_3R 5413245..5413358 114..227 100 -> Plus
arm_3R 5413719..5414269 228..778 98   Plus

BO08416.complete Sequence

1528 bp (1528 high quality bases) assembled on 2006-08-21

GenBank Submission: FJ631181

> BO08416.complete
GAAGTTATCAGTCGACATGGCCTTGCCATTGAGTGACCTGCTCATGATCG
GCGGCGGCGAGAAGAAATTGGCTGCCTGCCTGGTGCTGCTCCTGCTGGAG
CTCTTCCTGGAAGGCGCCGAGTCGACGGCCAGTCCAGCGGATATTGAGAA
CCATCTGGAGCTGGGCAAGGAGTTCCTCGCCCGCGGACAGCTGTCGGATG
CACTGACGCACTACCATGCAGCTGTTGAGGGCGATGCCAACAACTATCTG
ACGCTTTTCAAGCGCGGCACCGTCTATTTGGCGCTGGGCAAGACGCGCTT
TGCCGTCCAGGATTTCAGCAGGGTGCTGGAACTGAAGCCAGACTTTATGG
CCGCCCGAATCCAACGGGGTGTTGTGCACATGAAGAGCGGAGAGTACGAG
CAAGCGATCCAGGACTTTGATCAAGTCCTTCAAGAAGAACCCAACAACGG
CTTGGTGCTGGAGCACTATTCCCGCTTGGCACCCGCCCAGGAGCAGTGGG
TCCTTGTACAGCAGCTGATCCAATACAGTGATCACCAAAACGCCATCCCC
ATGATCACACAGTTGCTAGAGATCTCGCCGTGGGCTGTGCCCTTCCGGCA
GGCTCGCTCTGATGCCTACATTGCAATCAATGATCCACTGTTAGCCATTG
CTGACTTGCGACAGGTGAACCGACTCACCCAGGACAGCACTGAGGGTCAC
TACAAGATTGCACAGCTGCTGTACACAATTGGCCACGCCACAAATGCCTT
AAAAGAGATCCGCGAGTGCCTGAAGTTCGACCCGGAACACAAGCTCTGCT
TCCCCTTCTACAAGAAACTACGAAAGGTGGAAAAGCAGCTGGTTAACGCA
GAGCAAGCGCGTGAGGAGAAGCATTTTGCCGAGTGCATAGCCGCCGGAGA
GGCAGTCCTGCGTAACGAGCCGGAGGAGACGATGATCCGGTATGAGGGAC
ACAAGGTGCTCTGCACTTGCTACACGGGCGACGAGCAGTTTGGCAAGGCT
TTGCAACAGTGCAAGGAGGCACTGGATATTATGAAGGATGCTCAGGTCTA
CTGTGATCGTGCTGACGCATTGCTGGGCACCGAAATGTACGACGATGCCA
TACACTCCTTCCAAGCAGCTCTCGACCTGGAAGAGAGCAACACCCGCGCT
AAAGAAGGCATCCAGAGGGCAAAGAAGCTGCAGAAGCAGTCAGAGCGCAG
GGATTACTATAAGATATTAGGCGTTAAGCGTAGCGCCAGCAAACAGGAGA
TTGTGAAGGCCTACAGGAAGGCGGCGCAAAAGTGGCATCCGGACAACTTC
CGCGACGAGGAAAAGAAGGTGGCCGAGAAAAAGTTTATTGACATTGCCGC
AGCCAAGGAGGTTCTCACGGATCCCGAGAAGCGTCGTCAATTCGACAACG
GCGAGGATCCATTAGATCCTGAGAGCAATCAGCGTGGCGGCTTCCATGGC
GAACATCCGTTTGGACACTTCCAACACGGGTCGCCGTTCCAGTTCAAGTT
CCACTTCAATGCAAGCTTTCTAGACCAT

BO08416.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:32:46
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 1497 CG8286-PA 1..1494 17..1510 7440 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:32:47
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-RA 2217 CG8286-RA 417..1915 12..1510 7450 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:32:44
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9587996..9589279 227..1510 6390 99.8 Plus
3R 32079331 3R 9587521..9587636 112..227 580 100 Plus
3R 32079331 3R 9587358..9587460 12..114 500 99 Plus
Blast to na_te.dros performed on 2014-11-27 15:32:45 has no hits.

BO08416.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:54:13 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 1..1497 17..1511 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:10:34 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 418..1918 9..1510 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:47:39 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 422..1915 17..1512 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:54:14 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 418..1918 9..1510 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:10:26 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
P58IPK-RA 422..1915 17..1512 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:10:26 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9587523..9587636 114..227 100 -> Plus
3R 9587363..9587459 17..113 100 -> Plus
3R 9587997..9589279 228..1512 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:47:39 Download gff for BO08416.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5413085..5413181 17..113 100 -> Plus
arm_3R 5413245..5413358 114..227 100 -> Plus
arm_3R 5413719..5415001 228..1512 99   Plus

BO08416.pep Sequence

Translation from 16 to 1528

> BO08416.pep
MALPLSDLLMIGGGEKKLAACLVLLLLELFLEGAESTASPADIENHLELG
KEFLARGQLSDALTHYHAAVEGDANNYLTLFKRGTVYLALGKTRFAVQDF
SRVLELKPDFMAARIQRGVVHMKSGEYEQAIQDFDQVLQEEPNNGLVLEH
YSRLAPAQEQWVLVQQLIQYSDHQNAIPMITQLLEISPWAVPFRQARSDA
YIAINDPLLAIADLRQVNRLTQDSTEGHYKIAQLLYTIGHATNALKEIRE
CLKFDPEHKLCFPFYKKLRKVEKQLVNAEQAREEKHFAECIAAGEAVLRN
EPEETMIRYEGHKVLCTCYTGDEQFGKALQQCKEALDIMKDAQVYCDRAD
ALLGTEMYDDAIHSFQAALDLEESNTRAKEGIQRAKKLQKQSERRDYYKI
LGVKRSASKQEIVKAYRKAAQKWHPDNFRDEEKKVAEKKFIDIAAAKEVL
TDPEKRRQFDNGEDPLDPESNQRGGFHGEHPFGHFQHGSPFQFKFHFNAS
FLDH

BO08416.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:57:45
Subject Length Description Subject Range Query Range Score Percent Strand
P58IPK-PA 498 CG8286-PA 1..498 1..498 2592 100 Plus
Tpr2-PC 478 CG4599-PC 1..478 25..495 289 22.7 Plus
Tpr2-PE 464 CG4599-PE 6..464 44..495 271 22.6 Plus
Tpr2-PB 464 CG4599-PB 6..464 44..495 271 22.6 Plus
Tpr2-PD 508 CG4599-PD 50..508 44..495 271 22.6 Plus