Clone Sequence Records
BO08420.3prime Sequence
980 bp (910 high quality bases) assembled on 2006-01-06
> BO08420.3prime
ATGGTCTAGAAAGCTTGCGTGCCTGCGCTGCGGATTGGACTGAAGCATCC
GCGCGAACCGCCTCACCAGGAAAGGCCACAGGATGAGGACGGCAAACCAG
AGCGGGGAGATGTTCCTGAAGGGCCACCAGGCGGGCAGTGATCGTGGCTG
CGCCACCGTTCCTTTCGCTGCCTTTTGGCCGCTGCGAAGTTCGTTGAGCG
ACTGCTCCAGGCTGCGAACGCGCTGCTGCACTGCGCCCACATCGCTGTTC
ATCCGTGTGATAGCAGCCTGGATTTGACGCAGCAGGTCCGTGTTCTGGCC
AATCGCCTGGGTCAGCTCGTGGCTGAGATCGTAGGGATCGTCGTACTCAT
CGTCCGAGGGATCCACGATGGCCACGCTGCTGTTGCTCGTAAAGTTGTGC
GTGTCATGTTGTGTGTAGCTTGCTGTTGGCTTAGGTCCATAGCCATTGGT
CAGTGGCGGCGAACTATGGCCATTCTCCTTAATCGTTTCGGATGTGGCCA
GCGGTGCGGTGCTAGTCGCCTGAGGTTCCGGCTCCGGTTCGCCATTACAA
CTGGAGCCGTGCTGGGGACTGTTGGTGCGCGAGTGGAACGGCGAGTTGGG
ATGCGACTCGGCCAGCTCCTTCATGCCGGGCGAGACCAGCTCCAGTTCGT
CCAGGCTGATGTTTCCCAGACTATCGAGGCTGCCCACAAAGTTCTGCACA
TTCTCCGTGAACGACATGGTCTCAATGATCTCCTGCAGGCTCTCCACATA
GCGCTGCATCGCCTCCTCCTTGGTCAAGTGACGGTTATCGTTCCATGCCT
GCCACTTGGCCTTGCCTACGATGTCCCAAAAGCCGGGCTTCTTGTCACAT
CTGGTCTACCCTCGGTGGCCTGTTTGAACAGCCCGTAGAACTTGAGCATC
ATGCTGGTGCTGGGCTGGTAGGGGCCATTTTTGGGCAGACCCTTTATCAC
ATTGACTGCCGCCCTGGAACGCTCCTCAAT
BO08420.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 975 | CG8814-RA | 145..972 | 846..19 | 4140 | 100 | Minus |
| CG8814-PA | 975 | CG8814-RA | 27..144 | 963..846 | 590 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 387..1349 | 980..19 | 4745 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:08:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875397..2876359 | 980..19 | 4720 | 99.6 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:08:18 has no hits.
BO08420.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:35 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 10..975 | 16..980 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:04 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 10..975 | 16..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:53 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 405..1373 | 13..980 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:01:03 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 387..1355 | 13..980 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:01:03 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875397..2876365 | 13..980 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:53 Download gff for
BO08420.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875397..2876365 | 13..980 | 99 | | Minus |
BO08420.5prime Sequence
898 bp (879 high quality bases) assembled on 2006-01-06
> BO08420.5prime
GAAGTTATCAGTCGACATGGCGGCGATTGAGGAGCGTTTCCAGGCGGCAG
TCAATGTGATAAAGGGTCTGCCCAAAAATGGCCCCTACCAGCCCAGCACC
AGCATGATGCTCAAGTTCTACGGGCTGTTCAAACAGGCCACCGAGGGTAG
ACCAGATGTGGACAAGAAGCCCGGCTTTTGGGACATCGTAGGCAAGGCCA
AGTGGCAGGCATGGAACGATAACCGTCACTTGACCAAGGAGGAGGCGATG
CAGCGCTATGTGGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCAC
GGAGAATGTGCAGAACTTTGTGGGCAGCCTCGATAGTCTGGGAAACATCA
GCCTGGACGAACTGGAGCTGGTCTCGCCCGGCATGAAGGAGCTGGCCGAG
TCGCATCCCAACTCGCCGTTCCACTCGCGCACCAACAGTCCCCAGCACGG
CTCCAGTTGTAATGGCGAACCGGAGCCGGAACCTCAGGCGACTAGCACCG
CACCGCTGGCCACATCCGAAACGATTAAGGAGAATGGCCATAGTTCGCCG
CCACTGACCAATGGCTATGGACCTAAGCCAACAGCAAGCTACACACAACA
TGACACGCACAACTTTACGAGCAACAGCAGCGTGGCCATCGTGGATCCCT
CGGACGATGAGTACGACGATCCCTACGATCTCAGCCACGAGCTGACCCAG
GCGATTGGCCAGAACACGGACCTGCTGCGTCAAATCCAGGCTGCTATCAC
ACGGATGAACAGCGATGTGGGCGCAGTGCAGCAGCGCGTTCGCAGCCTGG
AGCAGTCGCTCAACGAACTTCGCAGCGGCCAAAAGGCAGCGAAAGGAACG
GTGGCGCAGCCACGATCACTGCCCGCCTGGTGGCCCTTCANGAACATC
BO08420.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 975 | CG8814-RA | 1..882 | 17..898 | 4391 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 01:38:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 378..1259 | 17..898 | 4399 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 01:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875388..2876269 | 17..898 | 4399 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-04 01:38:23 has no hits.
BO08420.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:36 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:05 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-PA | 1..882 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:42:58 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1277 | 17..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:30:56 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 378..1259 | 17..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:30:56 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875383..2876269 | 9..898 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:42:58 Download gff for
BO08420.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875383..2876269 | 9..898 | 99 | | Plus |
BO08420.complete Sequence
1006 bp (1006 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631182
> BO08420.complete
GAAGTTATCAGTCGACATGGCGGCGATTGAGGAGCGTTTCCAGGCGGCAG
TCAATGTGATAAAGGGTCTGCCCAAAAATGGCCCCTACCAGCCCAGCACC
AGCATGATGCTCAAGTTCTACGGGCTGTTCAAACAGGCCACCGAGGGTAG
ACCAGATGTGGACAAGAAGCCCGGCTTTTGGGACATCGTAGGCAAGGCCA
AGTGGCAGGCATGGAACGATAACCGTCACTTGACCAAGGAGGAGGCGATG
CAGCGCTATGTGGAGAGCCTGCAGGAGATCATTGAGACCATGTCGTTCAC
GGAGAATGTGCAGAACTTTGTGGGCAGCCTCGATAGTCTGGGAAACATCA
GCCTGGACGAACTGGAGCTGGTCTCGCCCGGCATGAAGGAGCTGGCCGAG
TCGCATCCCAACTCGCCGTTCCACTCGCGCACCAACAGTCCCCAGCACGG
CTCCAGTTGTAATGGCGAACCGGAGCCGGAACCTCAGGCGACTAGCACCG
CACCGCTGGCCACATCCGAAACGATTAAGGAGAATGGCCATAGTTCGCCG
CCACTGACCAATGGCTATGGACCTAAGCCAACAGCAAGCTACACACAACA
TGACACGCACAACTTTACGAGCAACAGCAGCGTGGCCATCGTGGATCCCT
CGGACGATGAGTACGACGATCCCTACGATCTCAGCCACGAGCTGACCCAG
GCGATTGGCCAGAACACGGACCTGCTGCGTCAAATCCAGGCTGCTATCAC
ACGGATGAACAGCGATGTGGGCGCAGTGCAGCAGCGCGTTCGCAGCCTGG
AGCAGTCGCTCAACGAACTTCGCAGCGGCCAAAAGGCAGCGAAAGGAACG
GTGGCGCAGCCACGATCACTGCCCGCCTGGTGGCCCTTCAGGAACATCTC
CCCGCTCTGGTTTGCCGTCCTCATCCTGTGGCCTTTCCTGGTGAGGCGGT
TCGCGCGGATGCTTCAGTCCAATCCGCAGCGCAGGCACGCAAGCTTTCTA
GACCAT
BO08420.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 975 | CG8814-PA | 1..972 | 17..988 | 4860 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-RA | 1785 | CG8814-RA | 378..1349 | 17..988 | 4860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2875388..2876359 | 17..988 | 4860 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:37:50 has no hits.
BO08420.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:19 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 1..975 | 17..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:14 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1373 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:20:34 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1367 | 17..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:19 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 396..1373 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:52:16 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8814-RA | 378..1349 | 17..990 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:52:16 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2875388..2876359 | 17..990 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:20:34 Download gff for
BO08420.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2875388..2876359 | 17..990 | 99 | | Plus |
BO08420.pep Sequence
Translation from 16 to 1006
> BO08420.pep
MAAIEERFQAAVNVIKGLPKNGPYQPSTSMMLKFYGLFKQATEGRPDVDK
KPGFWDIVGKAKWQAWNDNRHLTKEEAMQRYVESLQEIIETMSFTENVQN
FVGSLDSLGNISLDELELVSPGMKELAESHPNSPFHSRTNSPQHGSSCNG
EPEPEPQATSTAPLATSETIKENGHSSPPLTNGYGPKPTASYTQHDTHNF
TSNSSVAIVDPSDDEYDDPYDLSHELTQAIGQNTDLLRQIQAAITRMNSD
VGAVQQRVRSLEQSLNELRSGQKAAKGTVAQPRSLPAWWPFRNISPLWFA
VLILWPFLVRRFARMLQSNPQRRHASFLDH
BO08420.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8814-PA | 324 | CG8814-PA | 1..324 | 1..324 | 1711 | 100 | Plus |
| Dbi-PA | 86 | CG8627-PA | 2..82 | 4..89 | 161 | 39.5 | Plus |
| Dbi-PB | 86 | CG8627-PB | 2..82 | 4..89 | 161 | 39.5 | Plus |
| CG8498-PB | 90 | CG8498-PB | 1..83 | 1..89 | 151 | 38.2 | Plus |
| CG8498-PA | 90 | CG8498-PA | 1..83 | 1..89 | 151 | 38.2 | Plus |
