Clone Sequence Records
BO08421.3prime Sequence
1005 bp (889 high quality bases) assembled on 2006-01-06
> BO08421.3prime
ATGGTCTAGAAAGCTTGCCTTCCACAGCTTCTTGATAGACATGTTCTTCT
CCGAGTCCTTCTGCATCACCTTGGCCACAGCCATCTCGAAGTCCTCCTGG
GTGACATGGACGCGTCGTTCGCGCAGCGCATACATGCCGGCCTCCGTGCA
GACGCCCTTGACTTCCGCACCTGATGCGCCTGGCATTAGCTCGGCGATCT
TGCGCAGATTAATGCCACGCGTGAGGTTCATCTTACGGGAGTGGATCTTC
AAGATGTCCAGACGCGCCTCCTCGTTTGGTGGCGGGAACTCGATCTTGCG
ATCAATACGGCCGGGACGCAGCAGAGCGGGATCCAGGATGTCAATGCGAT
TGGTGGCCATGATCACCTTGATGTTCTTGGTGGCCTCAAAGCCGTCCAGC
TGGTTAAGTAGCTCCAGCATAGTACGCTGCACCTCGGAATCGCCGCCGGA
ACCTGACTCAATACGCGACGAGCCAATGGAATCGATTTCGTCCATGAAAA
TAATTGATGGTGCATGTTCCCGGGCCATTACAAAGAGTTCTCGAACCATG
CGCGAACCCTCGCCGATGAATTTCTGGACCAGCTCTGAGCCAGAGACGCG
AATGAAGGTGCACTCGGTGTGATGGGCAACGGCCCTGGCCAGCAAAGTCT
TTCCTGTACCTGGAGGTCCATAAAGGAGCACTCCCTTCGGCTGGGCAATA
CCCAAGGCATCAAACAGCTCTGGATGCTTTACGGGCAACTCAATCACCTC
CTTGATCTCTTTAATCTGTTTGTCCAGGCCGCCAACCATTTCGTATGTGG
AGTCAGGAACTTTTTCAACCATCATAAGCGAGACCAGCGGATCCACCTTA
TTGGGCAGAATCTTGTGCAGCGTATAGCTCTCATTGCGCAGGGCCACGCG
GCAATTGGGGGGTACGTCGTTGATATCTATGTTTTTGTCCAGATCGACGA
CGAACTTGCCCTCGGGATGCACCTTGACAAGCACTTTCTTCTTGTCCATG
GGCTT
BO08421.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1489-PA | 1218 | Pros45-RA | 229..1215 | 1005..19 | 4885 | 99.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 775..872 | 441..344 | 190 | 87.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 322..377 | 897..842 | 155 | 91 | Minus |
CG2241-PA | 1200 | CG2241-RA | 460..497 | 759..722 | 140 | 94.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 1045..1127 | 171..89 | 140 | 86.7 | Minus |
CG2241-PA | 1200 | CG2241-RA | 214..265 | 1005..954 | 135 | 90.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:39:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 355..1341 | 1005..19 | 4905 | 99.8 | Minus |
Rpt6R-RA | 1445 | CG2241-RA | 388..1370 | 1005..20 | 1975 | 80.2 | Minus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 97..278 | 910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316614..21317600 | 1005..19 | 4905 | 99.8 | Minus |
3R | 32079331 | 3R | 30582273..30583255 | 20..1005 | 1940 | 80 | Plus |
3R | 32079331 | 3R | 9755157..9755461 | 287..591 | 295 | 73.1 | Plus |
3R | 32079331 | 3R | 23754014..23754187 | 435..262 | 285 | 77.6 | Minus |
X | 23542271 | X | 11126108..11126432 | 606..282 | 245 | 71.7 | Minus |
3L | 28110227 | 3L | 11943026..11943150 | 365..241 | 190 | 76.8 | Minus |
Blast to na_te.dros performed on 2015-02-03 11:39:22 has no hits.
BO08421.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:37 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 229..1218 | 18..1005 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:06 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 229..1218 | 18..1005 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:11 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 355..1349 | 10..1005 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:09 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 355..1349 | 10..1005 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:09 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316614..21317608 | 10..1005 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:11 Download gff for
BO08421.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187641..21188635 | 10..1005 | 99 | | Minus |
BO08421.5prime Sequence
951 bp (878 high quality bases) assembled on 2006-01-06
> BO08421.5prime
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACAAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
G
BO08421.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1489-PA | 1218 | Pros45-RA | 1..935 | 17..951 | 4650 | 99.8 | Plus |
CG2241-PA | 1200 | CG2241-RA | 775..872 | 809..906 | 165 | 86.7 | Plus |
CG2241-PA | 1200 | CG2241-RA | 322..377 | 353..408 | 155 | 91 | Plus |
CG2241-PA | 1200 | CG2241-RA | 460..497 | 491..528 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 127..1061 | 17..951 | 4660 | 99.9 | Plus |
Rpt6R-RA | 1445 | CG2241-RA | 290..1088 | 147..948 | 1535 | 79.8 | Plus |
Rpt3R-RD | 1414 | CG9475-RD | 601..980 | 572..951 | 310 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316547..21317320 | 178..951 | 3855 | 99.9 | Plus |
3R | 32079331 | 3R | 30582555..30583322 | 948..178 | 1480 | 79.8 | Minus |
X | 23542271 | X | 21316258..21316403 | 34..179 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9755169..9755461 | 951..659 | 265 | 72.7 | Minus |
3R | 32079331 | 3R | 23754014..23754132 | 815..933 | 190 | 77.3 | Plus |
Blast to na_te.dros performed on 2015-02-11 13:01:41 has no hits.
BO08421.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:38 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:08 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1489-PA | 1..935 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:34 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1061 | 17..951 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:27 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1061 | 17..951 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:27 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316549..21317320 | 180..951 | 99 | | Plus |
X | 21316178..21316195 | 17..34 | 100 | -> | Plus |
X | 21316259..21316403 | 35..179 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:34 Download gff for
BO08421.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187205..21187222 | 17..34 | 100 | -> | Plus |
arm_X | 21187286..21187430 | 35..179 | 100 | -> | Plus |
arm_X | 21187576..21188347 | 180..951 | 99 | | Plus |
BO08421.complete Sequence
1249 bp (1249 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631183
> BO08421.complete
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACCAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
GCAAGATCGAGTTCCCGCCACCAAACGAGGAGGCGCGTCTGGACATCTTG
AAGATCCACTCCCGTAAGATGAACCTCACGCGTGGCATTAATCTGCGCAA
GATCGCCGAGCTAATGCCAGGCGCATCAGGTGCGGAAGTCAAGGGCGTCT
GCACGGAGGCCGGCATGTATGCGCTGCGCGAACGACGCGTCCATGTCACC
CAGGAGGACTTCGAGATGGCTGTGGCCAAGGTGATGCAGAAGGACTCGGA
GAAGAACATGTCTATCAAGAAGCTGTGGAAGGCAAGCTTTCTAGACCAT
BO08421.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1218 | CG1489-PA | 1..1215 | 17..1231 | 6075 | 100 | Plus |
Rpt6R-RA | 1200 | CG2241-PA | 116..1196 | 147..1230 | 2145 | 80.1 | Plus |
Rpt2-RB | 1320 | CG5289-PB | 655..1060 | 563..968 | 305 | 71.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-RA | 1404 | CG1489-RA | 127..1341 | 17..1231 | 6075 | 100 | Plus |
Rpt6R-RA | 1445 | CG2241-RA | 290..1370 | 147..1230 | 2145 | 80.1 | Plus |
CG1801-RC | 5303 | CG1801-RC | 1..182 | 1153..972 | 910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21316547..21317600 | 178..1231 | 5270 | 100 | Plus |
3R | 32079331 | 3R | 30582273..30583322 | 1230..178 | 2125 | 80.3 | Minus |
X | 23542271 | X | 21316258..21316403 | 34..179 | 730 | 100 | Plus |
3R | 32079331 | 3R | 9755157..9755461 | 963..659 | 295 | 73.1 | Minus |
3R | 32079331 | 3R | 23754014..23754187 | 815..988 | 285 | 77.6 | Plus |
X | 23542271 | X | 11126108..11126432 | 644..968 | 245 | 71.7 | Plus |
3L | 28110227 | 3L | 11943026..11943150 | 885..1009 | 190 | 76.8 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:34:51 has no hits.
BO08421.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:20 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 1..1218 | 17..1232 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:16 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 119..1341 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:23 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1341 | 17..1233 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:20 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pros45-RA | 119..1341 | 17..1240 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:35 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rpt6-RA | 127..1341 | 17..1233 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:35 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21316178..21316195 | 17..34 | 100 | -> | Plus |
X | 21316259..21316403 | 35..179 | 100 | -> | Plus |
X | 21316549..21317600 | 180..1233 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:23 Download gff for
BO08421.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21187205..21187222 | 17..34 | 100 | -> | Plus |
arm_X | 21187286..21187430 | 35..179 | 100 | -> | Plus |
arm_X | 21187576..21188627 | 180..1233 | 99 | | Plus |
BO08421.pep Sequence
Translation from 16 to 1249
> BO08421.pep
MTVTNRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNE
LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDK
NIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV
GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR
AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI
DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL
DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELM
PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI
KKLWKASFLDH
BO08421.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rpt6-PA | 405 | CG1489-PA | 1..405 | 1..405 | 2050 | 100 | Plus |
Rpt6R-PA | 399 | CG2241-PA | 12..399 | 17..405 | 1787 | 90.5 | Plus |
Rpt2-PB | 439 | CG5289-PB | 64..431 | 24..395 | 900 | 47 | Plus |
Rpt2-PA | 439 | CG5289-PA | 64..431 | 24..395 | 900 | 47 | Plus |
Rpt1-PA | 433 | CG1341-PA | 38..418 | 10..391 | 899 | 49.5 | Plus |