Clone BO08421 Report

Search the DGRC for BO08421

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:21
Vector:pDNR-Dual
Associated Gene/TranscriptPros45-RA
Protein status:BO08421.pep: validated full length
Sequenced Size:1249

Clone Sequence Records

BO08421.3prime Sequence

1005 bp (889 high quality bases) assembled on 2006-01-06

> BO08421.3prime
ATGGTCTAGAAAGCTTGCCTTCCACAGCTTCTTGATAGACATGTTCTTCT
CCGAGTCCTTCTGCATCACCTTGGCCACAGCCATCTCGAAGTCCTCCTGG
GTGACATGGACGCGTCGTTCGCGCAGCGCATACATGCCGGCCTCCGTGCA
GACGCCCTTGACTTCCGCACCTGATGCGCCTGGCATTAGCTCGGCGATCT
TGCGCAGATTAATGCCACGCGTGAGGTTCATCTTACGGGAGTGGATCTTC
AAGATGTCCAGACGCGCCTCCTCGTTTGGTGGCGGGAACTCGATCTTGCG
ATCAATACGGCCGGGACGCAGCAGAGCGGGATCCAGGATGTCAATGCGAT
TGGTGGCCATGATCACCTTGATGTTCTTGGTGGCCTCAAAGCCGTCCAGC
TGGTTAAGTAGCTCCAGCATAGTACGCTGCACCTCGGAATCGCCGCCGGA
ACCTGACTCAATACGCGACGAGCCAATGGAATCGATTTCGTCCATGAAAA
TAATTGATGGTGCATGTTCCCGGGCCATTACAAAGAGTTCTCGAACCATG
CGCGAACCCTCGCCGATGAATTTCTGGACCAGCTCTGAGCCAGAGACGCG
AATGAAGGTGCACTCGGTGTGATGGGCAACGGCCCTGGCCAGCAAAGTCT
TTCCTGTACCTGGAGGTCCATAAAGGAGCACTCCCTTCGGCTGGGCAATA
CCCAAGGCATCAAACAGCTCTGGATGCTTTACGGGCAACTCAATCACCTC
CTTGATCTCTTTAATCTGTTTGTCCAGGCCGCCAACCATTTCGTATGTGG
AGTCAGGAACTTTTTCAACCATCATAAGCGAGACCAGCGGATCCACCTTA
TTGGGCAGAATCTTGTGCAGCGTATAGCTCTCATTGCGCAGGGCCACGCG
GCAATTGGGGGGTACGTCGTTGATATCTATGTTTTTGTCCAGATCGACGA
CGAACTTGCCCTCGGGATGCACCTTGACAAGCACTTTCTTCTTGTCCATG
GGCTT

BO08421.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1489-PA 1218 Pros45-RA 229..1215 1005..19 4885 99.7 Minus
CG2241-PA 1200 CG2241-RA 775..872 441..344 190 87.7 Minus
CG2241-PA 1200 CG2241-RA 322..377 897..842 155 91 Minus
CG2241-PA 1200 CG2241-RA 460..497 759..722 140 94.7 Minus
CG2241-PA 1200 CG2241-RA 1045..1127 171..89 140 86.7 Minus
CG2241-PA 1200 CG2241-RA 214..265 1005..954 135 90.3 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 11:39:26
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 355..1341 1005..19 4905 99.8 Minus
Rpt6R-RA 1445 CG2241-RA 388..1370 1005..20 1975 80.2 Minus
CG1801-RC 5303 CG1801-RC 1..182 97..278 910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 11:39:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316614..21317600 1005..19 4905 99.8 Minus
3R 32079331 3R 30582273..30583255 20..1005 1940 80 Plus
3R 32079331 3R 9755157..9755461 287..591 295 73.1 Plus
3R 32079331 3R 23754014..23754187 435..262 285 77.6 Minus
X 23542271 X 11126108..11126432 606..282 245 71.7 Minus
3L 28110227 3L 11943026..11943150 365..241 190 76.8 Minus
Blast to na_te.dros performed on 2015-02-03 11:39:22 has no hits.

BO08421.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:37 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 229..1218 18..1005 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:06 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 229..1218 18..1005 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:42:11 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 355..1349 10..1005 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:35:09 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 355..1349 10..1005 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:35:09 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21316614..21317608 10..1005 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:42:11 Download gff for BO08421.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187641..21188635 10..1005 99   Minus

BO08421.5prime Sequence

951 bp (878 high quality bases) assembled on 2006-01-06

> BO08421.5prime
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACAAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
G

BO08421.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG1489-PA 1218 Pros45-RA 1..935 17..951 4650 99.8 Plus
CG2241-PA 1200 CG2241-RA 775..872 809..906 165 86.7 Plus
CG2241-PA 1200 CG2241-RA 322..377 353..408 155 91 Plus
CG2241-PA 1200 CG2241-RA 460..497 491..528 140 94.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 13:01:42
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 127..1061 17..951 4660 99.9 Plus
Rpt6R-RA 1445 CG2241-RA 290..1088 147..948 1535 79.8 Plus
Rpt3R-RD 1414 CG9475-RD 601..980 572..951 310 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 13:01:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316547..21317320 178..951 3855 99.9 Plus
3R 32079331 3R 30582555..30583322 948..178 1480 79.8 Minus
X 23542271 X 21316258..21316403 34..179 730 100 Plus
3R 32079331 3R 9755169..9755461 951..659 265 72.7 Minus
3R 32079331 3R 23754014..23754132 815..933 190 77.3 Plus
Blast to na_te.dros performed on 2015-02-11 13:01:41 has no hits.

BO08421.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:38 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 1..935 17..951 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:08 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1489-PA 1..935 17..951 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:28:34 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1061 17..951 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:24:27 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1061 17..951 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:27 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21316549..21317320 180..951 99   Plus
X 21316178..21316195 17..34 100 -> Plus
X 21316259..21316403 35..179 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:28:34 Download gff for BO08421.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187205..21187222 17..34 100 -> Plus
arm_X 21187286..21187430 35..179 100 -> Plus
arm_X 21187576..21188347 180..951 99   Plus

BO08421.complete Sequence

1249 bp (1249 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631183

> BO08421.complete
GAAGTTATCAGTCGACATGACGGTGACGAATCGGATGGAAATCGAGTCGG
CCTACCATAAAGGCGAGGGATTCCGGTCCTACTACATCCAAAAGATCGAG
GAACTGCAGCTGGTGGTGGCCGAGAAGCACCAGAATTTGAGACGACTGCA
GGCCCAGCGCAATGAGCTCAATGCTAAAGTTCGGATGCTGCGGGAGGAGC
TGCAGCTGCTCCAGGAACAGGGTAGCTATGTGGGCGAGGTTGTGAAGCCC
ATGGACAAGAAGAAAGTGCTGGTCAAGGTGCATCCCGAGGGCAAGTTCGT
CGTCGATCTGGACAAAAACATAGATATCAACGACGTAACCCCCAATTGCC
GCGTGGCCCTGCGCAATGAGAGCTATACGCTGCACAAGATTCTGCCCAAT
AAGGTGGATCCGCTGGTCTCGCTTATGATGGTTGAAAAAGTTCCTGACTC
CACATACGAAATGGTTGGCGGCCTGGACAAACAGATTAAAGAGATCAAGG
AGGTGATTGAGTTGCCCGTAAAGCATCCAGAGCTGTTTGATGCCTTGGGT
ATTGCCCAGCCGAAGGGAGTGCTCCTTTATGGACCTCCAGGTACAGGAAA
GACTTTGCTGGCCAGGGCCGTTGCCCATCACACCGAGTGCACCTTCATTC
GCGTCTCTGGCTCAGAGCTGGTCCAGAAATTCATCGGCGAGGGTTCGCGC
ATGGTTCGAGAACTCTTTGTAATGGCCCGGGAACATGCACCATCAATTAT
TTTCATGGACGAAATCGATTCCATTGGCTCGTCGCGTATTGAGTCAGGTT
CCGGCGGCGATTCCGAGGTGCAGCGTACTATGCTGGAGCTACTTAACCAG
CTGGACGGCTTTGAGGCCACCAAGAACATCAAGGTGATCATGGCCACCAA
TCGCATTGACATCCTGGATCCCGCTCTGCTGCGTCCCGGCCGTATTGATC
GCAAGATCGAGTTCCCGCCACCAAACGAGGAGGCGCGTCTGGACATCTTG
AAGATCCACTCCCGTAAGATGAACCTCACGCGTGGCATTAATCTGCGCAA
GATCGCCGAGCTAATGCCAGGCGCATCAGGTGCGGAAGTCAAGGGCGTCT
GCACGGAGGCCGGCATGTATGCGCTGCGCGAACGACGCGTCCATGTCACC
CAGGAGGACTTCGAGATGGCTGTGGCCAAGGTGATGCAGAAGGACTCGGA
GAAGAACATGTCTATCAAGAAGCTGTGGAAGGCAAGCTTTCTAGACCAT

BO08421.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1218 CG1489-PA 1..1215 17..1231 6075 100 Plus
Rpt6R-RA 1200 CG2241-PA 116..1196 147..1230 2145 80.1 Plus
Rpt2-RB 1320 CG5289-PB 655..1060 563..968 305 71.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:34:53
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-RA 1404 CG1489-RA 127..1341 17..1231 6075 100 Plus
Rpt6R-RA 1445 CG2241-RA 290..1370 147..1230 2145 80.1 Plus
CG1801-RC 5303 CG1801-RC 1..182 1153..972 910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:34:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21316547..21317600 178..1231 5270 100 Plus
3R 32079331 3R 30582273..30583322 1230..178 2125 80.3 Minus
X 23542271 X 21316258..21316403 34..179 730 100 Plus
3R 32079331 3R 9755157..9755461 963..659 295 73.1 Minus
3R 32079331 3R 23754014..23754187 815..988 285 77.6 Plus
X 23542271 X 11126108..11126432 644..968 245 71.7 Plus
3L 28110227 3L 11943026..11943150 885..1009 190 76.8 Plus
Blast to na_te.dros performed on 2014-11-27 10:34:51 has no hits.

BO08421.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:20 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 1..1218 17..1232 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:16 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 119..1341 17..1240 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:13:23 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1341 17..1233 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:20 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
Pros45-RA 119..1341 17..1240 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:25:35 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
Rpt6-RA 127..1341 17..1233 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:25:35 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
X 21316178..21316195 17..34 100 -> Plus
X 21316259..21316403 35..179 100 -> Plus
X 21316549..21317600 180..1233 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:13:23 Download gff for BO08421.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 21187205..21187222 17..34 100 -> Plus
arm_X 21187286..21187430 35..179 100 -> Plus
arm_X 21187576..21188627 180..1233 99   Plus

BO08421.pep Sequence

Translation from 16 to 1249

> BO08421.pep
MTVTNRMEIESAYHKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNE
LNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDK
NIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMV
GGLDKQIKEIKEVIELPVKHPELFDALGIAQPKGVLLYGPPGTGKTLLAR
AVAHHTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI
DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL
DPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELM
PGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSI
KKLWKASFLDH

BO08421.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:01
Subject Length Description Subject Range Query Range Score Percent Strand
Rpt6-PA 405 CG1489-PA 1..405 1..405 2050 100 Plus
Rpt6R-PA 399 CG2241-PA 12..399 17..405 1787 90.5 Plus
Rpt2-PB 439 CG5289-PB 64..431 24..395 900 47 Plus
Rpt2-PA 439 CG5289-PA 64..431 24..395 900 47 Plus
Rpt1-PA 433 CG1341-PA 38..418 10..391 899 49.5 Plus