Clone Sequence Records
BO08422.3prime Sequence
930 bp (797 high quality bases) assembled on 2006-01-06
> BO08422.3prime
ATGGTCTAGAAAGCTTGCCGTCTGCCTGCCATCCGTCCGTTCATCGCCGC
CAGCCTTTGGTGTCAGCTTGGCCAGCTTGTCCTTCACCTGAACATCGTCA
CCGCTATCGCCGTCGTCTGGCACCTCAATGGCGGCATCCTGATTCGCGAC
GGGAATGGTGCCGCTCCTGCCTGTCGCAATGCCGTTGCGTTCCGGACTGG
TGGGCTGCTCCTGCGTAGCTGGCGGCGCTGCAAACTGAGCCTCTGGTGGT
GGCGGAGACAACGGTCTGGCTGTCGCTGGCGCGTTCTCTTTGGTTGGATT
AACTGGAAACGTAAGTGCCCGCTTTACGGCCAGCGTTTCAATGGCCACAA
CCGTGCGCTCCAGCAGGTTCATCAGCCGGTCCTCGCGCGCATCCATCCGC
TTGAGGAGCTCCTCGTCCCGCTTCTCGCGCCGCTTCAGATACTCGATCAG
CTCGTAATTGGTGCTGTCGCCGTCGGTCGAGGTGGACATCTTGCGCTTCT
TCTTCAGCGTTGTCGATGAGGAGCAGTCGGACAGGATGTCCGTGTCGACG
ATCACATCGGGGTGCAGTATATTCGCATCCATGCCCGGCGAATAGTAGTT
CTGCGCTCCATTGTAGTTCGTCTGCATCAGCTGGATGTCGTCCGGATTGA
ACTCGCCCTCCGAAAGTGGCTCCGACTTCATTGATATGTGGTTCTCGTTG
TGATTGTTGTTCTGGTGGTGCATGTTGAGTGCTCCATTGCAGTCCTTTTC
GAAGTCGGGTGCTTCGCCAGAGTCGTCCATTGGCGCGTGGCCCAAGCCGA
GGCCGTGGCCATGACCCANGACGTGAAGGTGGTTTTTAAATGCTGGCCGC
TGGGGCTCATCCTCGTCGTCGTCTTCGGGCGTCATTTGAACGCCGCCAAC
GCTGGCCATCTGGAGCTCATGTCGCTTATG
BO08422.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14233-PA | 1662 | meso18E-RA | 748..1659 | 930..19 | 4541 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-RD | 2619 | CG14233-RD | 1250..2161 | 930..19 | 4549 | 99.9 | Minus |
| meso18E-RC | 2588 | CG14233-RC | 1219..2130 | 930..19 | 4549 | 99.9 | Minus |
| meso18E-RB | 3096 | CG14233-RB | 1727..2638 | 930..19 | 4549 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:54:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19706876..19707465 | 19..608 | 2950 | 100 | Plus |
| X | 23542271 | X | 19708150..19708405 | 675..930 | 1269 | 99.6 | Plus |
| X | 23542271 | X | 19707536..19707604 | 608..676 | 345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 16:54:20 has no hits.
BO08422.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:39 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14233-PA | 748..1662 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:09 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14233-PA | 748..1662 | 18..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:51 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 1727..2638 | 19..930 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:55 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 1727..2638 | 19..930 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:55 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19706876..19707464 | 19..607 | 100 | <- | Plus |
| X | 19707536..19707604 | 608..676 | 100 | <- | Plus |
| X | 19708152..19708405 | 677..930 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:51 Download gff for
BO08422.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19601569..19601637 | 608..676 | 100 | <- | Plus |
| arm_X | 19600909..19601497 | 19..607 | 100 | <- | Plus |
| arm_X | 19602185..19602438 | 677..930 | 99 | | Plus |
BO08422.5prime Sequence
898 bp (818 high quality bases) assembled on 2006-01-06
> BO08422.5prime
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGC
BO08422.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14233-PA | 1662 | meso18E-RA | 1..882 | 17..898 | 4410 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 03:27:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-RD | 2619 | CG14233-RD | 503..1384 | 17..898 | 4410 | 100 | Plus |
| meso18E-RC | 2588 | CG14233-RC | 472..1353 | 17..898 | 4410 | 100 | Plus |
| meso18E-RB | 3096 | CG14233-RB | 980..1861 | 17..898 | 4410 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 03:27:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19708271..19709150 | 898..19 | 4400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 03:27:55 has no hits.
BO08422.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:40 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14233-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:11 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14233-PA | 1..882 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:44:09 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..1861 | 17..898 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 05:16:27 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..1861 | 17..898 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 05:16:27 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19708271..19709160 | 6..898 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:44:09 Download gff for
BO08422.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19602304..19603193 | 6..898 | 99 | | Minus |
BO08422.complete Sequence
1693 bp (1693 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631184
> BO08422.complete
GAAGTTATCAGTCGACATGGATACGAAGAATCCCCCGCCGGTGACGAGCA
GCTATCACCACCAGCGGGCGCCGCGGACGCCGGAATCGTACTTCAACGTG
CCGGAGTCGGTGGCCCTGCTGAACATCGTCAAGTCGGAGCGCATCCAGAG
CGCGTTCCAGTCGAACCGAAAGAACCATGCCAGCGTGTGGGAGATGGTCG
CCGAGGTGCTCAACCGCTTCAGTGCGCGGAAGCGAACGGCCAAGCAGTGC
TGCAATCGGTACGAGAACCTCAAGAAGATCTACACGCAGCTGAAAAAGAA
TCCCGAGCGCCATGTGCGCCGCAACTGGCCGTACATGTTCCTCTTCAAGG
AGATCGAGGAGCAGCGCGGCGAGTGCTGGGGATCGAATGGCAAGCGTCTG
GCGCTCATAACCAAAAACCACAACGAGCTATCCTACTACCAGCGCCGACG
GCAGGCGGCCGAGCTGGGAGTGCTGCTCAACAAGGACAACCTCACCCCGC
ACCAGCACAGCCTACTGCAGAGCCTCAGCCAGAGCCAGAGCCAGAGCCAC
TCGCACGCCCACTCCACGGACTCCTCGCAGAGCGGGAGCAAGCTGGACCG
CTTCCTGCCCAATCACTTTGTGGAGGCGCAGCTCAGCGAGGTGGCCGGCC
CGGTCGGTGGCTCCGCATCCGGTGTATCCGGCATGTCCGCCGGCGGCTTC
GACGAGAATCCCCTCCAGATGCAGATGGTTCAGGCAGCTGCTGCCGCTGC
CGCCGTGGCCGCCCATAAGCGACATGAGCTCCAGATGGCCAGCGTTGGCG
GCGTTCAAATGACGCCCGAAGACGACGACGAGGATGAGCCCCAGCGGCCA
GCATTTAAAAACCACCTTCACGTCCTGGGTCATGGCCACGGCCTCGGCTT
GGGCCACGCGCCAATGGACGACTCTGGCGAAGCACCCGACTTCGAAAAGG
ACTGCAATGGAGCACTCAACATGCACCACCAGAACAACAATCACAACGAG
AACCACATATCAATGAAGTCGGAGCCACTTTCGGAGGGCGAGTTCAATCC
GGACGACATCCAGCTGATGCAGACGAACTACAATGGAGCGCAGAACTACT
ATTCGCCGGGCATGGATGCGAATATACTGCACCCCGATGTGATCGTCGAC
ACGGACATCCTGTCCGACTGCTCCTCATCGACAACGCTGAAGAAGAAGCG
CAAGATGTCCACCTCGACCGACGGCGACAGCACCAATTACGAGCTGATCG
AGTATCTGAAGCGGCGCGAGAAGCGGGACGAGGAGCTCCTCAAGCGGATG
GATGCGCGCGAGGACCGGCTGATGAACCTGCTGGAGCGCACGGTTGTGGC
CATTGAAACGCTGGCCGTAAAGCGGGCACTTACGTTTCCAGTTAATCCAA
CCAAAGAGAACGCGCCAGCGACAGCCAGACCGTTGTCTCCGCCACCACCA
GAGGCTCAGTTTGCAGCGCCGCCAGCTACGCAGGAGCAGCCCACCAGTCC
GGAACGCAACGGCATTGCGACAGGCAGGAGCGGCACCATTCCCGTCGCGA
ATCAGGATGCCGCCATTGAGGTGCCAGACGACGGCGATAGCGGTGACGAT
GTTCAGGTGAAGGACAAGCTGGCCAAGCTGACACCAAAGGCTGGCGGCGA
TGAACGGACGGATGGCAGGCAGACGGCAAGCTTTCTAGACCAT
BO08422.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-RD | 1662 | CG14233-PD | 1..1659 | 17..1675 | 8295 | 100 | Plus |
| meso18E-RC | 1662 | CG14233-PC | 1..1659 | 17..1675 | 8295 | 100 | Plus |
| meso18E-RB | 1662 | CG14233-PB | 1..1659 | 17..1675 | 8295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-RD | 2619 | CG14233-RD | 503..2161 | 17..1675 | 8295 | 100 | Plus |
| meso18E-RC | 2588 | CG14233-RC | 472..2130 | 17..1675 | 8295 | 100 | Plus |
| meso18E-RB | 3096 | CG14233-RB | 980..2638 | 17..1675 | 8295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19708150..19709150 | 1019..19 | 5005 | 100 | Minus |
| X | 23542271 | X | 19706876..19707465 | 1675..1086 | 2950 | 100 | Minus |
| X | 23542271 | X | 19707536..19707604 | 1086..1018 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:23:00 has no hits.
BO08422.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:37 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RA | 1..1662 | 17..1676 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:56 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RA | 401..2059 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:04 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..2638 | 17..1677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:37 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RA | 401..2059 | 17..1675 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:16 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| meso18E-RB | 980..2638 | 17..1677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:16 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19706874..19707464 | 1087..1677 | 99 | <- | Minus |
| X | 19707536..19707604 | 1018..1086 | 100 | <- | Minus |
| X | 19708152..19709151 | 17..1017 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:04 Download gff for
BO08422.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19600907..19601497 | 1087..1677 | 99 | <- | Minus |
| arm_X | 19601569..19601637 | 1018..1086 | 100 | <- | Minus |
| arm_X | 19602185..19603184 | 17..1017 | 99 | | Minus |
BO08422.pep Sequence
Translation from 16 to 1693
> BO08422.pep
MDTKNPPPVTSSYHHQRAPRTPESYFNVPESVALLNIVKSERIQSAFQSN
RKNHASVWEMVAEVLNRFSARKRTAKQCCNRYENLKKIYTQLKKNPERHV
RRNWPYMFLFKEIEEQRGECWGSNGKRLALITKNHNELSYYQRRRQAAEL
GVLLNKDNLTPHQHSLLQSLSQSQSQSHSHAHSTDSSQSGSKLDRFLPNH
FVEAQLSEVAGPVGGSASGVSGMSAGGFDENPLQMQMVQAAAAAAAVAAH
KRHELQMASVGGVQMTPEDDDEDEPQRPAFKNHLHVLGHGHGLGLGHAPM
DDSGEAPDFEKDCNGALNMHHQNNNHNENHISMKSEPLSEGEFNPDDIQL
MQTNYNGAQNYYSPGMDANILHPDVIVDTDILSDCSSSTTLKKKRKMSTS
TDGDSTNYELIEYLKRREKRDEELLKRMDAREDRLMNLLERTVVAIETLA
VKRALTFPVNPTKENAPATARPLSPPPPEAQFAAPPATQEQPTSPERNGI
ATGRSGTIPVANQDAAIEVPDDGDSGDDVQVKDKLAKLTPKAGGDERTDG
RQTASFLDH
BO08422.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| meso18E-PD | 553 | CG14233-PD | 1..553 | 1..553 | 2905 | 100 | Plus |
| meso18E-PC | 553 | CG14233-PC | 1..553 | 1..553 | 2905 | 100 | Plus |
| meso18E-PB | 553 | CG14233-PB | 1..553 | 1..553 | 2905 | 100 | Plus |
| meso18E-PA | 553 | CG14233-PA | 1..553 | 1..553 | 2905 | 100 | Plus |
