Clone Sequence Records
BO08425.3prime Sequence
870 bp (804 high quality bases) assembled on 2006-01-06
> BO08425.3prime
ATGGTCTAGAAAGCTTGCTTGCTCAATAAAATCGTTGTAATAGTTCAAGA
AAACCTCGCGATGCTCGCTAGCCAGATAATCCACCTTACCTTTCATCTCT
AGCAGTTCCTTTCTATCGGTGCGGCATTTCTTCTGGGCTATGATATCCCA
CAAATAGGTCATGCGAGCAATGTATTCCGTTGAGTTATCGCCACACTGCG
CAGCAATGCCTTCCAGCTGTTTGCGGATAATCCTCGCCAGATCTTCATAC
TCAAACTCATCCAATGAAGTGCCTCCATCTATCTCATAAAAACAGGCTGT
TACCAGTTCCTCGGCCATAATTCTTTTTAAGCTGTGGTGATCCACAAGCC
ACTTGTCTAGATCATCGAATGCCTTGAACAGCGCCTGCCTTTTTGACGAA
TCGGCACTGCTGCCGATGAGTCCAAGGAACTCATTGTACCAGGCGAAATG
TTGAAGCTCGTGGCACACCGTGCAAGTAATCGGTTTCTCTGCATTGCATC
TCAGCCACCAGCGAAGATTATTCTGCTGAACTTTGGCGTCTGGCAGAAAT
TCTTGTCGGCAGTTGGGCTTTTCGCAGCGATAACGATGAAAAGAAAGATA
GTTCTGGTCGGGATCAGTTCGTGTGCACTTAGCGCATGTGCACTCAAATT
TGTAGATGGCCTTGAGCGGATGAGATCGTTGTAGCTTTAAACTGTTTCTG
TAATCCATTGTATAGCAATTGAAGATCTCTTCGCCTTCTAGAATGTCCTT
TGCAGCGTAGTTCACCACGGAACATCCATCGAACTTGGTGCGAATTGAGG
GTTCGCAAGCGTGGTTGCACAAGCTCAAGTAGGGCAGATTGATAGCCGTG
ATAGGATCCGAGTGGGATAG
BO08425.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PB | 2256 | CG1868-RB | 1402..2253 | 870..19 | 4235 | 99.8 | Minus |
| CG1868-PA | 2157 | CG1868-RA | 1303..2154 | 870..19 | 4235 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:45:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 1451..2302 | 870..19 | 4245 | 99.9 | Minus |
| CG1868-RB | 2399 | CG1868-RB | 1492..2343 | 870..19 | 4245 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9582128..9582450 | 275..597 | 1615 | 100 | Plus |
| 2R | 25286936 | 2R | 9582505..9582777 | 598..870 | 1350 | 99.6 | Plus |
| 2R | 25286936 | 2R | 9581817..9582074 | 19..276 | 1290 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:45:21 has no hits.
BO08425.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:43 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PA | 1303..2157 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:14 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PA | 1303..2157 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:09 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 1492..2346 | 15..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:57:55 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 1492..2346 | 15..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:57:55 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9581814..9582073 | 15..275 | 99 | <- | Plus |
| 2R | 9582129..9582450 | 276..597 | 100 | <- | Plus |
| 2R | 9582505..9582777 | 598..870 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:09 Download gff for
BO08425.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5469319..5469578 | 15..275 | 99 | <- | Plus |
| arm_2R | 5469634..5469955 | 276..597 | 100 | <- | Plus |
| arm_2R | 5470010..5470282 | 598..870 | 99 | | Plus |
BO08425.5prime Sequence
907 bp (788 high quality bases) assembled on 2006-01-06
> BO08425.5prime
GAAGTTATCAGTCGACATGCCAGCGGACATTCTGCAGATATTCCAGAAGC
TGGCGCTCGACTTGCTGCAGGATTTGGAGCAACCGGTTGACAGGAAAGGA
TGCGCAGAACGTTCGAAAAATCTGCGCGAGGAGGGAAACCTTATGTTCAA
AGAGTCCGCATCGGGATCCTCCAAGGACTCGGTTCTGAAAGCATGCAGGC
TTTACTCGGAAGCCGTTTTCGAGGCTGAGAATGCTGTGGAAGAGCTGTCG
CTGGCGTTTGCCAACCGAGGAATAGCTTTGCAGGAGTACGGGTACTACAG
AGAAGCCTATGACGACTGCTCCAATGCGCTGGAGTGCGGATACCCGGAAA
GGCTGCGGCACAAGGTGATCATGCGGCAGGCCTTCTGCGCCTGGAAGCTG
AAGAAGATTGCTTCGCTAGAGGAGCATTTGGATTATCTCGGGCAGCTGCA
GCTTAAAGAGAGCTTTGAGCAGCAGCTGGAAGACCTGAAGCAGAAACTGG
AGCTGCTAAAGAACCAACCCAGAGAGCAGGAAACACAAGGGAAAGTGGTG
GATAAATCTCTAGGGGAAATCCTTACAGATCCTGGTCCCCGTGGTCGATA
TATGGTGGCTAAGGAAGCGATTAGCAAAGGCAACGTAATCTTTTCAGAGC
GCGCCTCCTGCTTTGTTCCATTGGAGCAACTGCTTATTTGCCAGCAGTGC
GCCGCCACCTTAATGAGCGCACCCATACCCTGCCCCAATTGCCATCAGCG
GGTAGTCTACTGCTCTAGGAAGTGTCGGGAGGCGCACTCGGCCATCCACA
AATTCGAGTGTGCCGCCTACAGAAAGGATATCCTCCGACTTTTGGGCATT
TCGCATTTGGCCTTGCGATTGCTTTTGACTTACATTCCCTACATAAGGCC
TCATTTG
BO08425.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PB | 2256 | CG1868-RB | 99..990 | 16..907 | 4460 | 100 | Plus |
| CG1868-PA | 2157 | CG1868-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 148..1039 | 16..907 | 4460 | 100 | Plus |
| CG1868-RB | 2399 | CG1868-RB | 189..1080 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:09:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9583581..9584135 | 570..16 | 2775 | 100 | Minus |
| 2R | 25286936 | 2R | 9583189..9583525 | 907..571 | 1685 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:09:06 has no hits.
BO08425.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:44 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PB | 91..990 | 5..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:16 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-PB | 91..990 | 5..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:03:59 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1080 | 5..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:45:10 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 181..1080 | 5..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:45:10 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9583189..9583525 | 571..907 | 100 | <- | Minus |
| 2R | 9583581..9584143 | 5..570 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:03:59 Download gff for
BO08425.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5470694..5471030 | 571..907 | 100 | <- | Minus |
| arm_2R | 5471086..5471648 | 5..570 | 99 | | Minus |
BO08425.complete Sequence
2188 bp (2188 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631185
> BO08425.complete
GAAGTTATCAGTCGACATGCCAGCGGACATTCTGCAGATATTCCAGAAGC
TGGCGCTCGACTTGCTGCAGGATTTGGAGCAACCGGTTGACAGGAAAGGA
TGCGCAGAACGTTCGAAAAATCTGCGCGAGGAGGGAAACCTTATGTTCAA
AGAGTCCGCATCGGGATCCTCCAAGGACTCGGTTCTGAAAGCATGCAGGC
TTTACTCGGAAGCCGTTTTCGAGGCTGAGAATGCTGTGGAAGAGCTGTCG
CTGGCGTTTGCCAACCGAGGAATAGCTTTGCAGGAGTACGGGTACTACAG
AGAAGCCTATGACGACTGCTCCAATGCGCTGGAGTGCGGATACCCGGAAA
GGCTGCGGCACAAGGTGATCATGCGGCAGGCCTTCTGCGCCTGGAAGCTG
AAGAAGATTGCTTCGCTAGAGGAGCATTTGGATTATCTCGGGCAGCTGCA
GCTTAAAGAGAGCTTTGAGCAGCAGCTGGAAGACCTGAAGCAGAAACTGG
AGCTGCTAAAGAACCAACCCAGAGAGCAGGAAACACAAGGGAAAGTGGTG
GATAAATCTCTAGGGGAAATCCTTACAGATCCTGGTCCCCGTGGTCGATA
TATGGTGGCTAAGGAAGCGATTAGCAAAGGCAACGTAATCTTTTCAGAGC
GCGCCTCCTGCTTTGTTCCATTGGAGCAACTGCTTATTTGCCAGCAGTGC
GCCGCCACCTTAATGAGCGCACCCATACCCTGCCCCAATTGCCATCAGCG
GGTAGTCTACTGCTCTAGGAAGTGTCGGGAGGCGCACTCGGCCATCCACA
AATTCGAGTGTGCCGCCTACAGAAAGGATATCCTCCGACTTTTGGGCATT
TCGCATTTGGCCTTGCGATTGCTTTTGACTTACATTCCCTACATAAGGCC
TCATTTGCAAGAGATGACCAGTGCAAAGGGTATGTGGGAAGAAATAATGA
ATCTGTCCCGAAAACCGGAAGAGAGTGAAAACGCTCCAGAGTATTTGCGA
AGCCTGCGCATGGTCAGTCAACTGGATCAGGCTATCGATGAGGAGTTAAA
TTACCACATCCTCTGTGCCAATCTCCTTCAACTTTACCTGAAAGAGCACA
CCGATTTCTACGATCAGTTCCACTCATTGCCAGCCAGCATTGAAGATTGG
CAACTGATTATATCAGCACTGATTCTGCGCTTCGCCGGCCAGTTGCTGGC
GAATGGGCATGTAGGCGATGCGTTGCTCGGAGTTGGCATGGAGCCAAAAG
AGTTTGTCATGCTGCAGCCGGAGTTGTGGCAAAAGCCTCGACACCTGAAA
CGCGGCCAGCTGCACAATCTATCCCACTCGGATCCTATCACGGCTATCAA
TCTGCCCTACTTGAGCTTGTGCAACCACGCCTGCGAACCCTCAATTCGCA
CCAAGTTCGATGGATGTTCCGTGGTGAACTACGCTGCAAAGGACATTCTA
GAAGGCGAAGAGATCTTCAATTGCTATACAATGGATTACAGAAACAGTTT
AAAGCTACAACGATCTCATCCGCTCAAGGCCATCTACAAATTTGAGTGCA
CATGCGCTAAGTGCACACGAACTGATCCCGACCAGAACTATCTTTCTTTT
CATCGTTATCGCTGCGAAAAGCCCAACTGCCGACAAGAATTTCTGCCAGA
CGCCAAAGTTCAGCAGAATAATCTTCGCTGGTGGCTGAGATGCAATGCAG
AGAAACCGATTACTTGCACGGTGTGCCACGAGCTTCAACATTTCGCCTGG
TACAATGAGTTCCTTGGACTCATCGGCAGCAGTGCCGATTCGTCAAAAAG
GCAGGCGCTGTTCAAGGCATTCGATGATCTAGACAAGTGGCTTGTGGATC
ACCACAGCTTAAAAAGAATTATGGCCGAGGAACTGGTAACAGCCTGTTTT
TATGAGATAGATGGAGGCACTTCATTGGATGAGTTTGAGTATGAAGATCT
GGCGAGGATTATCCGCAAACAGCTGGAAGGCATTGCTGCGCAGTGTGGCG
ATAACTCAACGGAATACATTGCTCGCATGACCTATTTGTGGGATATCATA
GCCCAGAAGAAATGCCGCACCGATAGAAAGGAACTGCTAGAGATGAAAGG
TAAGGTGGATTATCTGGCTAGCGAGCATCGCGAGGTTTTCTTGAACTATT
ACAACGATTTTATTGAGCAAGCAAGCTTTCTAGACCAT
BO08425.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:43:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2256 | CG1868-PC | 99..2253 | 16..2170 | 10775 | 100 | Plus |
| CG1868-RB | 2256 | CG1868-PB | 99..2253 | 16..2170 | 10775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:43:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-RC | 2358 | CG1868-RC | 148..2302 | 16..2170 | 10775 | 100 | Plus |
| CG1868-RB | 2399 | CG1868-RB | 189..2343 | 16..2170 | 10775 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:43:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9582505..9583525 | 1591..571 | 5105 | 100 | Minus |
| 2R | 25286936 | 2R | 9583581..9584135 | 570..16 | 2775 | 100 | Minus |
| 2R | 25286936 | 2R | 9582128..9582450 | 1914..1592 | 1615 | 100 | Minus |
| 2R | 25286936 | 2R | 9581817..9582074 | 2170..1913 | 1290 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:43:37 has no hits.
BO08425.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:20 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 91..2256 | 5..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:38 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RA | 87..2252 | 5..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:50:22 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 190..2343 | 17..2172 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:21 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RA | 87..2252 | 5..2174 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:17:26 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1868-RB | 190..2343 | 17..2172 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:17:26 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9581815..9582073 | 1914..2172 | 99 | <- | Minus |
| 2R | 9582129..9582450 | 1592..1913 | 100 | <- | Minus |
| 2R | 9582505..9583525 | 571..1591 | 100 | <- | Minus |
| 2R | 9583581..9584134 | 17..570 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:50:22 Download gff for
BO08425.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5469320..5469578 | 1914..2172 | 99 | <- | Minus |
| arm_2R | 5469634..5469955 | 1592..1913 | 100 | <- | Minus |
| arm_2R | 5470010..5471030 | 571..1591 | 100 | <- | Minus |
| arm_2R | 5471086..5471639 | 17..570 | 100 | | Minus |
BO08425.pep Sequence
Translation from 16 to 2188
> BO08425.pep
MPADILQIFQKLALDLLQDLEQPVDRKGCAERSKNLREEGNLMFKESASG
SSKDSVLKACRLYSEAVFEAENAVEELSLAFANRGIALQEYGYYREAYDD
CSNALECGYPERLRHKVIMRQAFCAWKLKKIASLEEHLDYLGQLQLKESF
EQQLEDLKQKLELLKNQPREQETQGKVVDKSLGEILTDPGPRGRYMVAKE
AISKGNVIFSERASCFVPLEQLLICQQCAATLMSAPIPCPNCHQRVVYCS
RKCREAHSAIHKFECAAYRKDILRLLGISHLALRLLLTYIPYIRPHLQEM
TSAKGMWEEIMNLSRKPEESENAPEYLRSLRMVSQLDQAIDEELNYHILC
ANLLQLYLKEHTDFYDQFHSLPASIEDWQLIISALILRFAGQLLANGHVG
DALLGVGMEPKEFVMLQPELWQKPRHLKRGQLHNLSHSDPITAINLPYLS
LCNHACEPSIRTKFDGCSVVNYAAKDILEGEEIFNCYTMDYRNSLKLQRS
HPLKAIYKFECTCAKCTRTDPDQNYLSFHRYRCEKPNCRQEFLPDAKVQQ
NNLRWWLRCNAEKPITCTVCHELQHFAWYNEFLGLIGSSADSSKRQALFK
AFDDLDKWLVDHHSLKRIMAEELVTACFYEIDGGTSLDEFEYEDLARIIR
KQLEGIAAQCGDNSTEYIARMTYLWDIIAQKKCRTDRKELLEMKGKVDYL
ASEHREVFLNYYNDFIEQASFLDH
BO08425.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:16:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1868-PC | 751 | CG1868-PC | 34..751 | 1..718 | 3808 | 100 | Plus |
| CG1868-PB | 751 | CG1868-PB | 34..751 | 1..718 | 3808 | 100 | Plus |
| dao-PB | 882 | CG15267-PB | 142..865 | 9..716 | 868 | 31.3 | Plus |
| dao-PA | 882 | CG15267-PA | 142..865 | 9..716 | 868 | 31.3 | Plus |
| dao-PC | 808 | CG15267-PC | 142..775 | 9..627 | 699 | 31 | Plus |
