Clone BO08426 Report

Search the DGRC for BO08426

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:26
Vector:pDNR-Dual
Associated Gene/Transcriptspz5-RA
Protein status:BO08426.pep: validated full length
Sequenced Size:1195

Clone Sequence Records

BO08426.3prime Sequence

874 bp (803 high quality bases) assembled on 2006-01-06

> BO08426.3prime
ATGGTCTAGAAAGCTTGCATTGGCGGCTATCGTGCAGACACAGCAACTGG
GAAACCAGAACGTGTCCGTGTACAGATTCTGCCCGTTGCCCTGGAGCGCA
ATTAAGCGTTTTTGCACAAACTTCTGCTCGCATCTCGAGTTGTAGCCGTT
GGGCAATTCGCACAGGTTCGAGCAGGTGTTCGAGGCGCAAAGCTCCGCCT
TGACCATTTGGCGAGCGGTGTTCTGCTCGTTGACCACAAACATCCAGTTT
CCGCGGCTATTCAGTGCCGCCTGCGGGGTGATGAACTGCGATGTCGTCTG
GCAGAGGGTGGAGCGCCCCGGACTTTGGCGCTTTGTCCTCGAACGCTTCT
TCAGCGGATTGGGGGCTTCCACGCCCACGATATCCAAGAGATCCATGTTG
AGCGAGACATCGCGCTTGCTTTGTGGGTGATCCTCTGCCGGGTTGTCCTG
TTCCTCGGCCTCCTCTGTCTGCTCGTTCACCGGCTCCACCACCTCCGCTT
GAACCTCGTCGGGTTGCCTCTGCTTCCGACTGAGATCCCTGACCAAGCGC
TTCAGCCAGAGCGTGGCATTGTAGGGAGTCGACTTGTCACTCTGATTGAT
GTACAAGTGACCGCCAGAAGATGAGGTGCCTCCGCCCTGGGAGTTATACC
GGTGACCCGAGCGATGACCTCCACCGGAGGAGGTGTACAGAAGATACGTG
GGTGCTTCCGTAGAGGGATTGCTGACAAAGAGCGGGTTTCCACCCCCAGA
CGGTCTCTGGGGATTACCTCCGAAGGGTGTCTGATAACTATATCCATTAA
AGTCCTGGGCAGCGGGATCCCGGGGCGGGAAGATGGACTTGGGATCGTAG
AAGACGGGAGTATCGTGCCACGCC

BO08426.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG9972-PA 1164 CG9972-RA 306..1161 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:50
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 688..1543 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885896..2886408 185..697 2565 100 Plus
3L 28110227 3L 2886686..2886865 695..874 900 100 Plus
3L 28110227 3L 2884094..2884259 19..184 830 100 Plus
Blast to na_te.dros performed on 2015-02-12 18:48:48 has no hits.

BO08426.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:45 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 306..1164 15..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:18 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 306..1164 15..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:51 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 688..1546 15..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:24 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 688..1546 15..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:24 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2886689..2886865 698..874 100   Plus
3L 2884090..2884259 15..184 98 <- Plus
3L 2885896..2886408 185..697 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:51 Download gff for BO08426.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2884090..2884259 15..184 98 <- Plus
arm_3L 2885896..2886408 185..697 100 <- Plus
arm_3L 2886689..2886865 698..874 100   Plus

BO08426.5prime Sequence

936 bp (826 high quality bases) assembled on 2006-01-06

> BO08426.5prime
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAA

BO08426.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9972-PA 1164 CG9972-RA 1..920 17..936 4600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 383..1302 17..936 4600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:18
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885971..2886408 936..499 2190 100 Minus
3L 28110227 3L 2886686..2886952 501..235 1335 100 Minus
3L 28110227 3L 2888888..2889045 236..79 790 100 Minus
3L 28110227 3L 2889101..2889163 79..17 315 100 Minus
Blast to na_te.dros performed on 2015-02-11 11:16:21 has no hits.

BO08426.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:46 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 1..918 17..934 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:19 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9972-PA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:52 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 372..1302 7..936 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:24 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 372..1302 7..936 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:24 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2885971..2886408 499..936 100 <- Minus
3L 2886689..2886952 235..498 100 <- Minus
3L 2888890..2889044 80..234 100 <- Minus
3L 2889101..2889174 7..79 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:52 Download gff for BO08426.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2885971..2886408 499..936 100 <- Minus
arm_3L 2886689..2886952 235..498 100 <- Minus
arm_3L 2888890..2889044 80..234 100 <- Minus
arm_3L 2889101..2889174 7..79 94   Minus

BO08426.complete Sequence

1195 bp (1195 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631186

> BO08426.complete
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACT
GGATGTTTGTGGTCAACGAGCAGAACACCGCTCGCCAAATGGTCAAGGCG
GAGCTTTGCGCCTCGAACACCTGCTCGAACCTGTGCGAATTGCCCAACGG
CTACAACTCGAGATGCGAGCAGAAGTTTGTGCAAAAACGCTTAATTGCGC
TCCAGGGCAACGGGCAGAATCTGTACACGGACACGTTCTGGTTTCCCAGT
TGCTGTGTCTGCACGATAGCCGCCAATGCAAGCTTTCTAGACCAT

BO08426.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1164 CG9972-PA 1..1161 17..1177 5805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:18
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-RA 1996 CG9972-RA 383..1543 17..1177 5805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:16
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2885896..2886408 1011..499 2565 100 Minus
3L 28110227 3L 2886686..2886952 501..235 1335 100 Minus
3L 28110227 3L 2884094..2884259 1177..1012 830 100 Minus
3L 28110227 3L 2888888..2889045 236..79 790 100 Minus
3L 28110227 3L 2889101..2889163 79..17 315 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:59:17 has no hits.

BO08426.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:21 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 1..1164 17..1181 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:17 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 370..1544 7..1181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:46 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 383..1543 17..1179 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:21 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
CG9972-RA 370..1544 7..1181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:09 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
spz5-RA 383..1543 17..1179 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:09 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2888890..2889044 80..234 100 <- Minus
3L 2889101..2889163 17..79 100   Minus
3L 2886689..2886952 235..498 100 <- Minus
3L 2884092..2884259 1012..1179 98 <- Minus
3L 2885896..2886408 499..1011 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:46 Download gff for BO08426.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2884092..2884259 1012..1179 98 <- Minus
arm_3L 2885896..2886408 499..1011 100 <- Minus
arm_3L 2886689..2886952 235..498 100 <- Minus
arm_3L 2888890..2889044 80..234 100 <- Minus
arm_3L 2889101..2889163 17..79 100   Minus

BO08426.pep Sequence

Translation from 16 to 1195

> BO08426.pep
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAANASFLDH

BO08426.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
spz5-PA 387 CG9972-PA 1..387 1..387 2110 100 Plus