Clone Sequence Records
BO08426.3prime Sequence
874 bp (803 high quality bases) assembled on 2006-01-06
> BO08426.3prime
ATGGTCTAGAAAGCTTGCATTGGCGGCTATCGTGCAGACACAGCAACTGG
GAAACCAGAACGTGTCCGTGTACAGATTCTGCCCGTTGCCCTGGAGCGCA
ATTAAGCGTTTTTGCACAAACTTCTGCTCGCATCTCGAGTTGTAGCCGTT
GGGCAATTCGCACAGGTTCGAGCAGGTGTTCGAGGCGCAAAGCTCCGCCT
TGACCATTTGGCGAGCGGTGTTCTGCTCGTTGACCACAAACATCCAGTTT
CCGCGGCTATTCAGTGCCGCCTGCGGGGTGATGAACTGCGATGTCGTCTG
GCAGAGGGTGGAGCGCCCCGGACTTTGGCGCTTTGTCCTCGAACGCTTCT
TCAGCGGATTGGGGGCTTCCACGCCCACGATATCCAAGAGATCCATGTTG
AGCGAGACATCGCGCTTGCTTTGTGGGTGATCCTCTGCCGGGTTGTCCTG
TTCCTCGGCCTCCTCTGTCTGCTCGTTCACCGGCTCCACCACCTCCGCTT
GAACCTCGTCGGGTTGCCTCTGCTTCCGACTGAGATCCCTGACCAAGCGC
TTCAGCCAGAGCGTGGCATTGTAGGGAGTCGACTTGTCACTCTGATTGAT
GTACAAGTGACCGCCAGAAGATGAGGTGCCTCCGCCCTGGGAGTTATACC
GGTGACCCGAGCGATGACCTCCACCGGAGGAGGTGTACAGAAGATACGTG
GGTGCTTCCGTAGAGGGATTGCTGACAAAGAGCGGGTTTCCACCCCCAGA
CGGTCTCTGGGGATTACCTCCGAAGGGTGTCTGATAACTATATCCATTAA
AGTCCTGGGCAGCGGGATCCCGGGGCGGGAAGATGGACTTGGGATCGTAG
AAGACGGGAGTATCGTGCCACGCC
BO08426.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9972-PA | 1164 | CG9972-RA | 306..1161 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:48:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 688..1543 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 18:48:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885896..2886408 | 185..697 | 2565 | 100 | Plus |
3L | 28110227 | 3L | 2886686..2886865 | 695..874 | 900 | 100 | Plus |
3L | 28110227 | 3L | 2884094..2884259 | 19..184 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 18:48:48 has no hits.
BO08426.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:45 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 306..1164 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:18 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 306..1164 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:14:51 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 688..1546 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:33:24 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 688..1546 | 15..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:33:24 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2886689..2886865 | 698..874 | 100 | | Plus |
3L | 2884090..2884259 | 15..184 | 98 | <- | Plus |
3L | 2885896..2886408 | 185..697 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:14:51 Download gff for
BO08426.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2884090..2884259 | 15..184 | 98 | <- | Plus |
arm_3L | 2885896..2886408 | 185..697 | 100 | <- | Plus |
arm_3L | 2886689..2886865 | 698..874 | 100 | | Plus |
BO08426.5prime Sequence
936 bp (826 high quality bases) assembled on 2006-01-06
> BO08426.5prime
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAA
BO08426.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9972-PA | 1164 | CG9972-RA | 1..920 | 17..936 | 4600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 383..1302 | 17..936 | 4600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:16:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885971..2886408 | 936..499 | 2190 | 100 | Minus |
3L | 28110227 | 3L | 2886686..2886952 | 501..235 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 2888888..2889045 | 236..79 | 790 | 100 | Minus |
3L | 28110227 | 3L | 2889101..2889163 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 11:16:21 has no hits.
BO08426.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:46 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:19 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-PA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:14:52 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 372..1302 | 7..936 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:50:24 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 372..1302 | 7..936 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:50:24 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2885971..2886408 | 499..936 | 100 | <- | Minus |
3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
3L | 2889101..2889174 | 7..79 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:14:52 Download gff for
BO08426.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2885971..2886408 | 499..936 | 100 | <- | Minus |
arm_3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
arm_3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
arm_3L | 2889101..2889174 | 7..79 | 94 | | Minus |
BO08426.complete Sequence
1195 bp (1195 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631186
> BO08426.complete
GAAGTTATCAGTCGACATGACAAAAAGTATTAAACGTCCGCCCCCCTTTA
GTTGTAAACAAGTTCTTCTTACCTATGTGATATTAGCTTATACAGTAGCC
GCCCACAGCTCGCCCCCGCCATGTGGCCTTTATGGAGCCCCGCCTTGCCA
GTTCCTCCCGGCGCCACCTGGACAAACGCCCACCTGTGCCCGTCCAGGAA
AGACGTACTGCGAGCACGCCGATAACTACCCCACGTATCTCATAAAGAGC
CTCGTTCGAAAGTGGGGCTATGAGGCCGCCACTCTGTTGGTGGACGAAAC
CTGGGAAGATTTTGCGGCTGTGGCGTGGCACGATACTCCCGTCTTCTACG
ATCCCAAGTCCATCTTCCCGCCCCGGGATCCCGCTGCCCAGGACTTTAAT
GGATATAGTTATCAGACACCCTTCGGAGGTAATCCCCAGAGACCGTCTGG
GGGTGGAAACCCGCTCTTTGTCAGCAATCCCTCTACGGAAGCACCCACGT
ATCTTCTGTACACCTCCTCCGGTGGAGGTCATCGCTCGGGTCACCGGTAT
AACTCCCAGGGCGGAGGCACCTCATCTTCTGGCGGTCACTTGTACATCAA
TCAGAGTGACAAGTCGACTCCCTACAATGCCACGCTCTGGCTGAAGCGCT
TGGTCAGGGATCTCAGTCGGAAGCAGAGGCAACCCGACGAGGTTCAAGCG
GAGGTGGTGGAGCCGGTGAACGAGCAGACAGAGGAGGCCGAGGAACAGGA
CAACCCGGCAGAGGATCACCCACAAAGCAAGCGCGATGTCTCGCTCAACA
TGGATCTCTTGGATATCGTGGGCGTGGAAGCCCCCAATCCGCTGAAGAAG
CGTTCGAGGACAAAGCGCCAAAGTCCGGGGCGCTCCACCCTCTGCCAGAC
GACATCGCAGTTCATCACCCCGCAGGCGGCACTGAATAGCCGCGGAAACT
GGATGTTTGTGGTCAACGAGCAGAACACCGCTCGCCAAATGGTCAAGGCG
GAGCTTTGCGCCTCGAACACCTGCTCGAACCTGTGCGAATTGCCCAACGG
CTACAACTCGAGATGCGAGCAGAAGTTTGTGCAAAAACGCTTAATTGCGC
TCCAGGGCAACGGGCAGAATCTGTACACGGACACGTTCTGGTTTCCCAGT
TGCTGTGTCTGCACGATAGCCGCCAATGCAAGCTTTCTAGACCAT
BO08426.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1164 | CG9972-PA | 1..1161 | 17..1177 | 5805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:59:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-RA | 1996 | CG9972-RA | 383..1543 | 17..1177 | 5805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:59:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2885896..2886408 | 1011..499 | 2565 | 100 | Minus |
3L | 28110227 | 3L | 2886686..2886952 | 501..235 | 1335 | 100 | Minus |
3L | 28110227 | 3L | 2884094..2884259 | 1177..1012 | 830 | 100 | Minus |
3L | 28110227 | 3L | 2888888..2889045 | 236..79 | 790 | 100 | Minus |
3L | 28110227 | 3L | 2889101..2889163 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:59:17 has no hits.
BO08426.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:21 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 1..1164 | 17..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:17 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 370..1544 | 7..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:46 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 383..1543 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:21 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9972-RA | 370..1544 | 7..1181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:12:09 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spz5-RA | 383..1543 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:12:09 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
3L | 2889101..2889163 | 17..79 | 100 | | Minus |
3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
3L | 2884092..2884259 | 1012..1179 | 98 | <- | Minus |
3L | 2885896..2886408 | 499..1011 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:46 Download gff for
BO08426.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2884092..2884259 | 1012..1179 | 98 | <- | Minus |
arm_3L | 2885896..2886408 | 499..1011 | 100 | <- | Minus |
arm_3L | 2886689..2886952 | 235..498 | 100 | <- | Minus |
arm_3L | 2888890..2889044 | 80..234 | 100 | <- | Minus |
arm_3L | 2889101..2889163 | 17..79 | 100 | | Minus |
BO08426.pep Sequence
Translation from 16 to 1195
> BO08426.pep
MTKSIKRPPPFSCKQVLLTYVILAYTVAAHSSPPPCGLYGAPPCQFLPAP
PGQTPTCARPGKTYCEHADNYPTYLIKSLVRKWGYEAATLLVDETWEDFA
AVAWHDTPVFYDPKSIFPPRDPAAQDFNGYSYQTPFGGNPQRPSGGGNPL
FVSNPSTEAPTYLLYTSSGGGHRSGHRYNSQGGGTSSSGGHLYINQSDKS
TPYNATLWLKRLVRDLSRKQRQPDEVQAEVVEPVNEQTEEAEEQDNPAED
HPQSKRDVSLNMDLLDIVGVEAPNPLKKRSRTKRQSPGRSTLCQTTSQFI
TPQAALNSRGNWMFVVNEQNTARQMVKAELCASNTCSNLCELPNGYNSRC
EQKFVQKRLIALQGNGQNLYTDTFWFPSCCVCTIAANASFLDH
BO08426.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spz5-PA | 387 | CG9972-PA | 1..387 | 1..387 | 2110 | 100 | Plus |