Clone Sequence Records
BO08427.3prime Sequence
923 bp (821 high quality bases) assembled on 2006-01-06
> BO08427.3prime
ATGGTCTAGAAAGCTTGCAATGACGGCTCTCTCACTGGGCTTTTTGCCGC
TGCCAATGGCGCCGCTACAGCCGGCGTCGCTGTCCCTGCCGCTCTCTTCA
ACTATGGCAAAAGAGTCCGAATCCGAGGTGCCCGCAGGCCAATCGATGTC
CGGCATGGTGGGCCAGTCGATGTCCTCCGTGGTGTCCCAATCGACCGCGC
GGGTTTGACTGATCTCGAAGAGCGCAGGCGAGCAGAGGCTGAGCACCTCC
TCCTTCAACTTGGTTAACAGGGACTCGAAACTATCACTGGTCTTGCAGAG
GAAACAAACCGCCAGCGAGGGGTCCATGGCGGAGAAGTTCAGGCGAGCAG
CATGCTTTTGATGGTAGGTCTCGTCGTAGTCCTGTTCTGCCGCAGCAGTT
TTCTGTGCCACGGCGCCCGTTCTCTGCGTGGTATGAGGATCTAGGTAGAG
AACCTCATCGTCCACATAGCCCAGGAAGTACAGAGCCTGGTTTGGTCGAC
CTCCGATCATGCCACAACTGCTGTCTAGTTCAAGGCAGCGCTTTAAGGCA
GGCACGTAAAGCGGGTTAATGTCTGTGATGCCCAGGCGCAGGGGGATTAT
GAGCAGCAGTGGCTTCCACGAGCCTCCTTCTCGGCACGACGCATATACGT
CATCCAATACCACTGTGCTATCCATGGCCACGTGAATCGCCAGGGAGCTC
CAGTCATCGAAGCGCACTAGTTTTTTGAGAATCTGGGCTACTGTATTCGG
TCCCAGCCACTCGCCGACCGCTTTGTTCTGGGACTCTCCCATCTGGGCAA
TCTGGTGTATGGAGTAGAAGCTATTCCTTACGTCTTCAAAACGGTTCACG
ATCTTGAGGTAGGTGGCATCACGGCAGTCCGGCGTCCAGAACAGTCGCGT
CCCAATGTAAGTCGATCAGGGCC
BO08427.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4428-PA | 1236 | Atg4-RA | 360..1233 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:46:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg4a-RA | 2076 | CG4428-RA | 660..1566 | 923..19 | 4485 | 99.8 | Minus |
Atg4a-RB | 4075 | CG4428-RB | 660..1563 | 923..19 | 4430 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:46:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1082116..1082665 | 648..99 | 2735 | 99.8 | Minus |
2L | 23513712 | 2L | 1081720..1081920 | 923..725 | 905 | 99 | Minus |
2L | 23513712 | 2L | 1081973..1082056 | 728..645 | 405 | 98.8 | Minus |
2L | 23513712 | 2L | 1082788..1082868 | 99..19 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 15:46:11 has no hits.
BO08427.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:46 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-PA | 327..1236 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:20 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4428-PA | 327..1236 | 16..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:29 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-RA | 660..1566 | 19..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:40 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4a-RA | 660..1566 | 19..923 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:40 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1081720..1081920 | 725..923 | 99 | -> | Minus |
2L | 1081977..1082056 | 645..724 | 100 | -> | Minus |
2L | 1082120..1082665 | 99..644 | 100 | -> | Minus |
2L | 1082789..1082868 | 19..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:29 Download gff for
BO08427.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1081720..1081920 | 725..923 | 99 | -> | Minus |
arm_2L | 1081977..1082056 | 645..724 | 100 | -> | Minus |
arm_2L | 1082120..1082665 | 99..644 | 100 | -> | Minus |
arm_2L | 1082789..1082868 | 19..98 | 100 | | Minus |
BO08427.5prime Sequence
935 bp (841 high quality bases) assembled on 2006-01-06
> BO08427.5prime
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCT
BO08427.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4428-PA | 1236 | Atg4-RA | 1..919 | 17..935 | 4595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg4a-RB | 4075 | CG4428-RB | 334..1252 | 17..935 | 4595 | 100 | Plus |
Atg4a-RA | 2076 | CG4428-RA | 334..1252 | 17..935 | 4595 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1081577..1081920 | 200..543 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 1082116..1082431 | 620..935 | 1565 | 99.7 | Plus |
2L | 23513712 | 2L | 1081244..1081427 | 17..200 | 920 | 100 | Plus |
2L | 23513712 | 2L | 1081973..1082056 | 540..623 | 405 | 98.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 23:40:11 has no hits.
BO08427.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:47 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:21 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4428-PA | 1..919 | 17..935 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:10 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-RA | 328..1252 | 9..935 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:47 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4a-RA | 328..1252 | 9..935 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:47 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
2L | 1082120..1082431 | 624..935 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:10 Download gff for
BO08427.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
arm_2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
arm_2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
arm_2L | 1082120..1082431 | 624..935 | 100 | | Plus |
BO08427.complete Sequence
1267 bp (1267 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631187
> BO08427.complete
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCT
CGCTGGCGGTTTGTTTCCTCTGCAAGACCAGTGATAGTTTCGAGTCCCTG
TTAACCAAGTTGAAGGAGGAGGTGCTCAGCCTCTGCTCGCCTGCGCTCTT
CGAGATCAGTCAAACCCGCGCGGTCGATTGGGACACCACGGAGGACATCG
ACTGGCCCACCATGCCGGACATCGATTGGCCTGCGGGCACCTCGGATTCG
GACTCTTTTGCCATAGTTGAAGAGAGCGGCAGGGACAGCGACGCCGGCTG
TAGCGGCGCCATTGGCAGCGGCAAAAAGCCCAGTGAGAGAGCCGTCATTG
CAAGCTTTCTAGACCAT
BO08427.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg4a-RA | 1236 | CG4428-PA | 1..1233 | 17..1249 | 6165 | 100 | Plus |
Atg4a-RB | 1233 | CG4428-PB | 1..1230 | 17..1249 | 6085 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg4a-RA | 2076 | CG4428-RA | 334..1566 | 17..1249 | 6165 | 100 | Plus |
Atg4a-RB | 4075 | CG4428-RB | 334..1563 | 17..1249 | 6085 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1082116..1082665 | 620..1169 | 2735 | 99.8 | Plus |
2L | 23513712 | 2L | 1081577..1081920 | 200..543 | 1720 | 100 | Plus |
2L | 23513712 | 2L | 1081244..1081427 | 17..200 | 920 | 100 | Plus |
2L | 23513712 | 2L | 1081973..1082056 | 540..623 | 405 | 98.8 | Plus |
2L | 23513712 | 2L | 1082788..1082868 | 1169..1249 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:58 has no hits.
BO08427.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:22 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-RA | 1..1236 | 17..1252 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:19 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-RA | 326..1564 | 9..1249 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4-RA | 334..1566 | 17..1251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:39 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg4a-RA | 334..1566 | 17..1251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:39 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
2L | 1082120..1082665 | 624..1169 | 100 | -> | Plus |
2L | 1082789..1082868 | 1170..1251 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:48 Download gff for
BO08427.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1081244..1081427 | 17..200 | 100 | -> | Plus |
arm_2L | 1081578..1081920 | 201..543 | 100 | -> | Plus |
arm_2L | 1081977..1082056 | 544..623 | 100 | -> | Plus |
arm_2L | 1082120..1082665 | 624..1169 | 100 | -> | Plus |
arm_2L | 1082789..1082868 | 1170..1251 | 97 | | Plus |
BO08427.pep Sequence
Translation from 16 to 1267
> BO08427.pep
MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV
WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML
RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ
IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD
DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG
GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH
AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT
RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG
SGKKPSERAVIASFLDH
BO08427.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg4a-PA | 411 | CG4428-PA | 1..411 | 1..411 | 2172 | 100 | Plus |
Atg4a-PB | 410 | CG4428-PB | 1..410 | 1..411 | 2155 | 99.8 | Plus |
Atg4b-PA | 668 | CG6194-PA | 263..567 | 63..333 | 452 | 32.9 | Plus |