Clone BO08427 Report

Search the DGRC for BO08427

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptAtg4-RA
Protein status:BO08427.pep: validated full length
Sequenced Size:1267

Clone Sequence Records

BO08427.3prime Sequence

923 bp (821 high quality bases) assembled on 2006-01-06

> BO08427.3prime
ATGGTCTAGAAAGCTTGCAATGACGGCTCTCTCACTGGGCTTTTTGCCGC
TGCCAATGGCGCCGCTACAGCCGGCGTCGCTGTCCCTGCCGCTCTCTTCA
ACTATGGCAAAAGAGTCCGAATCCGAGGTGCCCGCAGGCCAATCGATGTC
CGGCATGGTGGGCCAGTCGATGTCCTCCGTGGTGTCCCAATCGACCGCGC
GGGTTTGACTGATCTCGAAGAGCGCAGGCGAGCAGAGGCTGAGCACCTCC
TCCTTCAACTTGGTTAACAGGGACTCGAAACTATCACTGGTCTTGCAGAG
GAAACAAACCGCCAGCGAGGGGTCCATGGCGGAGAAGTTCAGGCGAGCAG
CATGCTTTTGATGGTAGGTCTCGTCGTAGTCCTGTTCTGCCGCAGCAGTT
TTCTGTGCCACGGCGCCCGTTCTCTGCGTGGTATGAGGATCTAGGTAGAG
AACCTCATCGTCCACATAGCCCAGGAAGTACAGAGCCTGGTTTGGTCGAC
CTCCGATCATGCCACAACTGCTGTCTAGTTCAAGGCAGCGCTTTAAGGCA
GGCACGTAAAGCGGGTTAATGTCTGTGATGCCCAGGCGCAGGGGGATTAT
GAGCAGCAGTGGCTTCCACGAGCCTCCTTCTCGGCACGACGCATATACGT
CATCCAATACCACTGTGCTATCCATGGCCACGTGAATCGCCAGGGAGCTC
CAGTCATCGAAGCGCACTAGTTTTTTGAGAATCTGGGCTACTGTATTCGG
TCCCAGCCACTCGCCGACCGCTTTGTTCTGGGACTCTCCCATCTGGGCAA
TCTGGTGTATGGAGTAGAAGCTATTCCTTACGTCTTCAAAACGGTTCACG
ATCTTGAGGTAGGTGGCATCACGGCAGTCCGGCGTCCAGAACAGTCGCGT
CCCAATGTAAGTCGATCAGGGCC

BO08427.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG4428-PA 1236 Atg4-RA 360..1233 892..19 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 15:46:15
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-RA 2076 CG4428-RA 660..1566 923..19 4485 99.8 Minus
Atg4a-RB 4075 CG4428-RB 660..1563 923..19 4430 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 15:46:08
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1082116..1082665 648..99 2735 99.8 Minus
2L 23513712 2L 1081720..1081920 923..725 905 99 Minus
2L 23513712 2L 1081973..1082056 728..645 405 98.8 Minus
2L 23513712 2L 1082788..1082868 99..19 405 100 Minus
Blast to na_te.dros performed on 2015-01-31 15:46:11 has no hits.

BO08427.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:46 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg4-PA 327..1236 16..923 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:20 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4428-PA 327..1236 16..923 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:17:29 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 660..1566 19..923 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:37:40 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg4a-RA 660..1566 19..923 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:37:40 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1081720..1081920 725..923 99 -> Minus
2L 1081977..1082056 645..724 100 -> Minus
2L 1082120..1082665 99..644 100 -> Minus
2L 1082789..1082868 19..98 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:17:29 Download gff for BO08427.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1081720..1081920 725..923 99 -> Minus
arm_2L 1081977..1082056 645..724 100 -> Minus
arm_2L 1082120..1082665 99..644 100 -> Minus
arm_2L 1082789..1082868 19..98 100   Minus

BO08427.5prime Sequence

935 bp (841 high quality bases) assembled on 2006-01-06

> BO08427.5prime
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCT

BO08427.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG4428-PA 1236 Atg4-RA 1..919 17..935 4595 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:40:16
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-RB 4075 CG4428-RB 334..1252 17..935 4595 100 Plus
Atg4a-RA 2076 CG4428-RA 334..1252 17..935 4595 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:40:07
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1081577..1081920 200..543 1720 100 Plus
2L 23513712 2L 1082116..1082431 620..935 1565 99.7 Plus
2L 23513712 2L 1081244..1081427 17..200 920 100 Plus
2L 23513712 2L 1081973..1082056 540..623 405 98.8 Plus
Blast to na_te.dros performed on 2015-02-11 23:40:11 has no hits.

BO08427.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:47 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg4-PA 1..919 17..935 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:21 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4428-PA 1..919 17..935 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:55:10 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 328..1252 9..935 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:52:47 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg4a-RA 328..1252 9..935 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:52:47 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1081244..1081427 17..200 100 -> Plus
2L 1081578..1081920 201..543 100 -> Plus
2L 1081977..1082056 544..623 100 -> Plus
2L 1082120..1082431 624..935 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:55:10 Download gff for BO08427.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1081244..1081427 17..200 100 -> Plus
arm_2L 1081578..1081920 201..543 100 -> Plus
arm_2L 1081977..1082056 544..623 100 -> Plus
arm_2L 1082120..1082431 624..935 100   Plus

BO08427.complete Sequence

1267 bp (1267 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631187

> BO08427.complete
GAAGTTATCAGTCGACATGCTGGTTGGACTCAGCGACCAGCTAGCGCGGA
TCATGGAGAGCGTCTTCGAGGCGTACTTGGGCCCAGACAGCGTCCTCGCT
AGTGCAGTTGGCCAGGCGGTGGGCAGCGGAGAGCCGGAGGACATTCCCCG
AAGAAACACCGACGTCTGGGTCCTGGGAAAGAAGTACAACGCCATACAGG
AGCTAGAGCTCATCCGACGGGACATTCAGTCGCGCCTGTGGTGCACATAT
CGCCATGGATTTTCGCCGTTGGGAGAAGTCCAGCTCACCACGGACAAGGG
CTGGGGCTGCATGCTGCGCTGTGGTCAGATGGTTCTCGCCCAGGCCCTGA
TCGACTTACATTTGGGACGCGACTGGTTCTGGACGCCGGACTGCCGTGAT
GCCACCTACCTCAAGATCGTGAACCGTTTTGAAGACGTAAGGAATAGCTT
CTACTCCATACACCAGATTGCCCAGATGGGAGAGTCCCAGAACAAAGCGG
TCGGCGAGTGGCTGGGACCGAATACAGTAGCCCAGATTCTCAAAAAACTA
GTGCGCTTCGATGACTGGAGCTCCCTGGCGATTCACGTGGCCATGGATAG
CACAGTGGTATTGGATGACGTATATGCGTCGTGCCGAGAAGGAGGCTCGT
GGAAGCCACTGCTGCTCATAATCCCCCTGCGCCTGGGCATCACAGACATT
AACCCGCTTTACGTGCCTGCCTTAAAGCGCTGCCTTGAACTAGACAGCAG
TTGTGGCATGATCGGAGGTCGACCAAACCAGGCTCTGTACTTCCTGGGCT
ATGTGGACGATGAGGTTCTCTACCTAGATCCTCATACCACGCAGAGAACG
GGCGCCGTGGCACAGAAAACTGCTGCGGCAGAACAGGACTACGACGAGAC
CTACCATCAAAAGCATGCTGCTCGCCTGAACTTCTCCGCCATGGACCCCT
CGCTGGCGGTTTGTTTCCTCTGCAAGACCAGTGATAGTTTCGAGTCCCTG
TTAACCAAGTTGAAGGAGGAGGTGCTCAGCCTCTGCTCGCCTGCGCTCTT
CGAGATCAGTCAAACCCGCGCGGTCGATTGGGACACCACGGAGGACATCG
ACTGGCCCACCATGCCGGACATCGATTGGCCTGCGGGCACCTCGGATTCG
GACTCTTTTGCCATAGTTGAAGAGAGCGGCAGGGACAGCGACGCCGGCTG
TAGCGGCGCCATTGGCAGCGGCAAAAAGCCCAGTGAGAGAGCCGTCATTG
CAAGCTTTCTAGACCAT

BO08427.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:59
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-RA 1236 CG4428-PA 1..1233 17..1249 6165 100 Plus
Atg4a-RB 1233 CG4428-PB 1..1230 17..1249 6085 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-RA 2076 CG4428-RA 334..1566 17..1249 6165 100 Plus
Atg4a-RB 4075 CG4428-RB 334..1563 17..1249 6085 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1082116..1082665 620..1169 2735 99.8 Plus
2L 23513712 2L 1081577..1081920 200..543 1720 100 Plus
2L 23513712 2L 1081244..1081427 17..200 920 100 Plus
2L 23513712 2L 1081973..1082056 540..623 405 98.8 Plus
2L 23513712 2L 1082788..1082868 1169..1249 405 100 Plus
Blast to na_te.dros performed on 2014-11-27 14:16:58 has no hits.

BO08427.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:22 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 1..1236 17..1252 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:19 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 326..1564 9..1249 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:48 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4-RA 334..1566 17..1251 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:39 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
Atg4a-RA 334..1566 17..1251 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:39 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1081244..1081427 17..200 100 -> Plus
2L 1081578..1081920 201..543 100 -> Plus
2L 1081977..1082056 544..623 100 -> Plus
2L 1082120..1082665 624..1169 100 -> Plus
2L 1082789..1082868 1170..1251 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:48 Download gff for BO08427.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1081244..1081427 17..200 100 -> Plus
arm_2L 1081578..1081920 201..543 100 -> Plus
arm_2L 1081977..1082056 544..623 100 -> Plus
arm_2L 1082120..1082665 624..1169 100 -> Plus
arm_2L 1082789..1082868 1170..1251 97   Plus

BO08427.pep Sequence

Translation from 16 to 1267

> BO08427.pep
MLVGLSDQLARIMESVFEAYLGPDSVLASAVGQAVGSGEPEDIPRRNTDV
WVLGKKYNAIQELELIRRDIQSRLWCTYRHGFSPLGEVQLTTDKGWGCML
RCGQMVLAQALIDLHLGRDWFWTPDCRDATYLKIVNRFEDVRNSFYSIHQ
IAQMGESQNKAVGEWLGPNTVAQILKKLVRFDDWSSLAIHVAMDSTVVLD
DVYASCREGGSWKPLLLIIPLRLGITDINPLYVPALKRCLELDSSCGMIG
GRPNQALYFLGYVDDEVLYLDPHTTQRTGAVAQKTAAAEQDYDETYHQKH
AARLNFSAMDPSLAVCFLCKTSDSFESLLTKLKEEVLSLCSPALFEISQT
RAVDWDTTEDIDWPTMPDIDWPAGTSDSDSFAIVEESGRDSDAGCSGAIG
SGKKPSERAVIASFLDH

BO08427.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:58
Subject Length Description Subject Range Query Range Score Percent Strand
Atg4a-PA 411 CG4428-PA 1..411 1..411 2172 100 Plus
Atg4a-PB 410 CG4428-PB 1..410 1..411 2155 99.8 Plus
Atg4b-PA 668 CG6194-PA 263..567 63..333 452 32.9 Plus