Clone BO08428 Report

Search the DGRC for BO08428

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:28
Vector:pDNR-Dual
Associated Gene/TranscriptCG18769-RA
Protein status:BO08428.pep: validated full length
Sequenced Size:1132

Clone Sequence Records

BO08428.3prime Sequence

932 bp (811 high quality bases) assembled on 2006-01-06

> BO08428.3prime
ATGGTCTAGAAAGCTTGCAGTGTATTTCCGCTCCGCCTTTTCCTCAGTTA
AGGTTGGTGGCGTGTTTTCCTGGGTCCGAACCAAATGCGATGGCAATTGC
ATGTTGAGCGGGTCGTTGATCCTTCTGAGATTGTACTCCAACTCCGCCGA
CTTTCGCTTCAGTTCGTTGTAGTGTTCTACATCGAACTGAACCTTTTTGG
CGTTCCTATAAAGGGAAAGTGAGAATTCGCGATTCTTCACATCCTCCATC
ATATATTCCCTCTTAGTGACACAATAGTAGGCATACATTGCCATTGTCGT
CCCGTAAGTAACAAAATATGTAACGGGTTCCATAATATCCCAAGAGTATT
CCCACCAAGTCAGTCGTGCCAAAATGCCAAATTGCACCGACATTAGGCCC
AAACCCATCCAAGTCATAAAGTTAGTGCGACGAGCGGCCTTTTTGCTGAG
TTCCAGTTTTTTCTCTTCCAGTGGTTCTAGTTCATAGCGTAGGGTCTCCA
GTTCTTTGGCCAATTGATTGCTCTTCTCCAGCTGATATTCTCCGACGTTG
AATGCCTCGTAGAGCTGAGCAATAACCTTACGAACATCGCCCACTTTGTC
CATGGACTCCAATGTGACTTTGTCACGTTTGGGAGGATTCACATCCAATG
TGCGATTGTTGATTTGTATGCTAAACGAGTCATCCAGCAAGCTTTCGATG
GTGCAGGACGACGCGATTCGCACACCATGCTTGTTGATCACCGCAGCTCG
ATCGATGCCCCGATCCTCAGCCCTGAGCATGGCTAACAGATCACCAACGT
TGTGGGAGATGGGTTTCAGGGCAAACTGGCAGAGTTCATTGCGACTGGGA
AGTCGTACAGTCATGTGTGGCATGCCATTCACGTATTCCACATAGATGTC
TTCTCCCGTCGTCGGTTTTTTATGCTTGTCCG

BO08428.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PA 1101 CG18769-RA 185..1098 932..19 4570 100 Minus
CG18769-PC 1101 CG18769-RC 185..1098 932..19 4570 100 Minus
CG18769-PB 1101 CG18769-RB 185..1098 932..19 4570 100 Minus
CG18769-PD 1101 CG18769-RD 185..1098 932..19 4570 100 Minus
CG18769-PF 858 CG18769-RF 1..855 873..19 4275 100 Minus
CG18769-PE 858 CG18769-RE 1..855 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RE 1543 CG18769-RE 199..1112 932..19 4570 100 Minus
CG18769-RD 1811 CG18769-RD 467..1380 932..19 4570 100 Minus
CG18769-RB 2623 CG18769-RB 1279..2192 932..19 4570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6591478..6591718 259..19 1205 100 Minus
3L 28110227 3L 6590602..6590835 904..671 1170 100 Minus
3L 28110227 3L 6591212..6591418 464..258 1035 100 Minus
3L 28110227 3L 6590891..6590999 673..565 545 100 Minus
3L 28110227 3L 6591055..6591160 568..463 530 100 Minus
Blast to na_te.dros performed on 2015-02-10 23:42:02 has no hits.

BO08428.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:49 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PB 185..1101 15..932 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:23 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PD 185..1101 15..932 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:29 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1279..2196 14..932 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:28 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1279..2196 14..932 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:28 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 6562389..6562418 903..932 100 -> Minus
3L 6590604..6590835 671..902 100 -> Minus
3L 6590894..6590999 565..670 100 -> Minus
3L 6591059..6591160 463..564 100 -> Minus
3L 6591214..6591417 259..462 100 -> Minus
3L 6591479..6591722 14..258 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:29 Download gff for BO08428.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6555489..6555518 903..932 100 -> Minus
arm_3L 6583704..6583935 671..902 100 -> Minus
arm_3L 6583994..6584099 565..670 100 -> Minus
arm_3L 6584159..6584260 463..564 100 -> Minus
arm_3L 6584314..6584517 259..462 100 -> Minus
arm_3L 6584579..6584822 14..258 99   Minus

BO08428.5prime Sequence

897 bp (832 high quality bases) assembled on 2006-01-06

> BO08428.5prime
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGGACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGATATATGATGGAGGATGTGAAG

BO08428.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PA 1101 CG18769-RA 1..860 17..876 4275 99.8 Plus
CG18769-PC 1101 CG18769-RC 1..860 17..876 4275 99.8 Plus
CG18769-PB 1101 CG18769-RB 1..860 17..876 4275 99.8 Plus
CG18769-PD 1101 CG18769-RD 1..860 17..876 4275 99.8 Plus
CG18769-PF 858 CG18769-RF 1..617 260..876 3060 99.8 Plus
CG18769-PE 858 CG18769-RE 1..617 260..876 3060 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1811 CG18769-RD 282..1164 16..897 4375 99.8 Plus
CG18769-RB 2623 CG18769-RB 1094..1976 16..897 4375 99.8 Plus
CG18769-RC 1778 CG18769-RC 249..1131 16..897 4375 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6590602..6590835 229..462 1170 100 Plus
3L 28110227 3L 6591212..6591418 669..875 1020 99.5 Plus
3L 28110227 3L 6551832..6551949 16..133 590 100 Plus
3L 28110227 3L 6590891..6590999 460..568 545 100 Plus
3L 28110227 3L 6591055..6591160 565..670 530 100 Plus
3L 28110227 3L 6562321..6562418 133..230 490 100 Plus
Blast to na_te.dros performed on 2015-02-13 00:09:53 has no hits.

BO08428.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:50 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PB 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:25 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-PD 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:56 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 241..1131 10..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:08 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 241..1131 10..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:08 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6590604..6590835 231..462 100 -> Plus
3L 6590894..6590999 463..568 100 -> Plus
3L 6591059..6591160 569..670 100 -> Plus
3L 6591214..6591417 671..874 99 -> Plus
3L 6591479..6591502 875..897 95   Plus
3L 6551824..6551949 10..133 97 -> Plus
3L 6562322..6562418 134..230 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:56 Download gff for BO08428.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6544924..6545049 10..133 97 -> Plus
arm_3L 6555422..6555518 134..230 100 -> Plus
arm_3L 6583704..6583935 231..462 100 -> Plus
arm_3L 6583994..6584099 463..568 100 -> Plus
arm_3L 6584159..6584260 569..670 100 -> Plus
arm_3L 6584314..6584517 671..874 99 -> Plus
arm_3L 6584579..6584602 875..897 95   Plus

BO08428.complete Sequence

1132 bp (1132 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631188

> BO08428.complete
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGAGGATGTGAAGAA
TCGCGAATTCTCACTTTCCCTTTATAGGAACGCCAAAAAGGTTCAGTTCG
ATGTAGAACACTACAACGAACTGAAGCGAAAGTCGGCGGAGTTGGAGTAC
AATCTCAGAAGGATCAACGACCCGCTCAACATGCAATTGCCATCGCATTT
GGTTCGGACCCAGGAAAACACGCCACCAACCTTAACTGAGGAAAAGGCGG
AGCGGAAATACACTGCAAGCTTTCTAGACCAT

BO08428.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1101 CG18769-PD 1..1098 17..1114 5490 100 Plus
CG18769-RB 1101 CG18769-PB 1..1098 17..1114 5490 100 Plus
CG18769-RC 1101 CG18769-PC 1..1098 17..1114 5490 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-RD 1811 CG18769-RD 282..1380 16..1114 5495 100 Plus
CG18769-RB 2623 CG18769-RB 1094..2192 16..1114 5495 100 Plus
CG18769-RC 1778 CG18769-RC 249..1347 16..1114 5495 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:08
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6591478..6591718 874..1114 1205 100 Plus
3L 28110227 3L 6590602..6590835 229..462 1170 100 Plus
3L 28110227 3L 6591212..6591418 669..875 1035 100 Plus
3L 28110227 3L 6551832..6551949 16..133 590 100 Plus
3L 28110227 3L 6590891..6590999 460..568 545 100 Plus
3L 28110227 3L 6591055..6591160 565..670 530 100 Plus
3L 28110227 3L 6562321..6562418 133..230 490 100 Plus
Blast to na_te.dros performed on 2014-11-28 08:34:09 has no hits.

BO08428.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:23 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1..1101 17..1118 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:50 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1095..2192 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:51 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 250..1347 17..1116 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:23 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RB 1086..2196 10..1119 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:41 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
CG18769-RC 250..1347 17..1116 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:41 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6590604..6590835 231..462 100 -> Plus
3L 6590894..6590999 463..568 100 -> Plus
3L 6591059..6591160 569..670 100 -> Plus
3L 6591214..6591417 671..874 100 -> Plus
3L 6591479..6591718 875..1116 99   Plus
3L 6562322..6562418 134..230 100 -> Plus
3L 6551833..6551949 17..133 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:51 Download gff for BO08428.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6544933..6545049 17..133 100 -> Plus
arm_3L 6555422..6555518 134..230 100 -> Plus
arm_3L 6583704..6583935 231..462 100 -> Plus
arm_3L 6583994..6584099 463..568 100 -> Plus
arm_3L 6584159..6584260 569..670 100 -> Plus
arm_3L 6584314..6584517 671..874 100 -> Plus
arm_3L 6584579..6584818 875..1116 99   Plus

BO08428.pep Sequence

Translation from 16 to 1132

> BO08428.pep
MSRNRAAMVSAFRLFLRPATTTTHRSLALRLAPGTTFALHLRPCHELQQH
RSFASTAEDGETDKHKKPTTGEDIYVEYVNGMPHMTVRLPSRNELCQFAL
KPISHNVGDLLAMLRAEDRGIDRAAVINKHGVRIASSCTIESLLDDSFSI
QINNRTLDVNPPKRDKVTLESMDKVGDVRKVIAQLYEAFNVGEYQLEKSN
QLAKELETLRYELEPLEEKKLELSKKAARRTNFMTWMGLGLMSVQFGILA
RLTWWEYSWDIMEPVTYFVTYGTTMAMYAYYCVTKREYMMEDVKNREFSL
SLYRNAKKVQFDVEHYNELKRKSAELEYNLRRINDPLNMQLPSHLVRTQE
NTPPTLTEEKAERKYTASFLDH

BO08428.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG18769-PD 366 CG18769-PD 1..366 1..366 1901 100 Plus
CG18769-PB 366 CG18769-PB 1..366 1..366 1901 100 Plus
CG18769-PC 366 CG18769-PC 1..366 1..366 1901 100 Plus
CG18769-PA 366 CG18769-PA 1..366 1..366 1901 100 Plus
CG18769-PI 365 CG18769-PI 1..365 1..366 1884 99.7 Plus