Clone Sequence Records
BO08428.3prime Sequence
932 bp (811 high quality bases) assembled on 2006-01-06
> BO08428.3prime
ATGGTCTAGAAAGCTTGCAGTGTATTTCCGCTCCGCCTTTTCCTCAGTTA
AGGTTGGTGGCGTGTTTTCCTGGGTCCGAACCAAATGCGATGGCAATTGC
ATGTTGAGCGGGTCGTTGATCCTTCTGAGATTGTACTCCAACTCCGCCGA
CTTTCGCTTCAGTTCGTTGTAGTGTTCTACATCGAACTGAACCTTTTTGG
CGTTCCTATAAAGGGAAAGTGAGAATTCGCGATTCTTCACATCCTCCATC
ATATATTCCCTCTTAGTGACACAATAGTAGGCATACATTGCCATTGTCGT
CCCGTAAGTAACAAAATATGTAACGGGTTCCATAATATCCCAAGAGTATT
CCCACCAAGTCAGTCGTGCCAAAATGCCAAATTGCACCGACATTAGGCCC
AAACCCATCCAAGTCATAAAGTTAGTGCGACGAGCGGCCTTTTTGCTGAG
TTCCAGTTTTTTCTCTTCCAGTGGTTCTAGTTCATAGCGTAGGGTCTCCA
GTTCTTTGGCCAATTGATTGCTCTTCTCCAGCTGATATTCTCCGACGTTG
AATGCCTCGTAGAGCTGAGCAATAACCTTACGAACATCGCCCACTTTGTC
CATGGACTCCAATGTGACTTTGTCACGTTTGGGAGGATTCACATCCAATG
TGCGATTGTTGATTTGTATGCTAAACGAGTCATCCAGCAAGCTTTCGATG
GTGCAGGACGACGCGATTCGCACACCATGCTTGTTGATCACCGCAGCTCG
ATCGATGCCCCGATCCTCAGCCCTGAGCATGGCTAACAGATCACCAACGT
TGTGGGAGATGGGTTTCAGGGCAAACTGGCAGAGTTCATTGCGACTGGGA
AGTCGTACAGTCATGTGTGGCATGCCATTCACGTATTCCACATAGATGTC
TTCTCCCGTCGTCGGTTTTTTATGCTTGTCCG
BO08428.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PA | 1101 | CG18769-RA | 185..1098 | 932..19 | 4570 | 100 | Minus |
CG18769-PC | 1101 | CG18769-RC | 185..1098 | 932..19 | 4570 | 100 | Minus |
CG18769-PB | 1101 | CG18769-RB | 185..1098 | 932..19 | 4570 | 100 | Minus |
CG18769-PD | 1101 | CG18769-RD | 185..1098 | 932..19 | 4570 | 100 | Minus |
CG18769-PF | 858 | CG18769-RF | 1..855 | 873..19 | 4275 | 100 | Minus |
CG18769-PE | 858 | CG18769-RE | 1..855 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:42:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RE | 1543 | CG18769-RE | 199..1112 | 932..19 | 4570 | 100 | Minus |
CG18769-RD | 1811 | CG18769-RD | 467..1380 | 932..19 | 4570 | 100 | Minus |
CG18769-RB | 2623 | CG18769-RB | 1279..2192 | 932..19 | 4570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:42:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6591478..6591718 | 259..19 | 1205 | 100 | Minus |
3L | 28110227 | 3L | 6590602..6590835 | 904..671 | 1170 | 100 | Minus |
3L | 28110227 | 3L | 6591212..6591418 | 464..258 | 1035 | 100 | Minus |
3L | 28110227 | 3L | 6590891..6590999 | 673..565 | 545 | 100 | Minus |
3L | 28110227 | 3L | 6591055..6591160 | 568..463 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 23:42:02 has no hits.
BO08428.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:49 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PB | 185..1101 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:23 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PD | 185..1101 | 15..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:05:29 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1279..2196 | 14..932 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:15:28 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1279..2196 | 14..932 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:15:28 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6562389..6562418 | 903..932 | 100 | -> | Minus |
3L | 6590604..6590835 | 671..902 | 100 | -> | Minus |
3L | 6590894..6590999 | 565..670 | 100 | -> | Minus |
3L | 6591059..6591160 | 463..564 | 100 | -> | Minus |
3L | 6591214..6591417 | 259..462 | 100 | -> | Minus |
3L | 6591479..6591722 | 14..258 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:05:29 Download gff for
BO08428.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6555489..6555518 | 903..932 | 100 | -> | Minus |
arm_3L | 6583704..6583935 | 671..902 | 100 | -> | Minus |
arm_3L | 6583994..6584099 | 565..670 | 100 | -> | Minus |
arm_3L | 6584159..6584260 | 463..564 | 100 | -> | Minus |
arm_3L | 6584314..6584517 | 259..462 | 100 | -> | Minus |
arm_3L | 6584579..6584822 | 14..258 | 99 | | Minus |
BO08428.5prime Sequence
897 bp (832 high quality bases) assembled on 2006-01-06
> BO08428.5prime
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGGACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGATATATGATGGAGGATGTGAAG
BO08428.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PA | 1101 | CG18769-RA | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG18769-PC | 1101 | CG18769-RC | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG18769-PB | 1101 | CG18769-RB | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG18769-PD | 1101 | CG18769-RD | 1..860 | 17..876 | 4275 | 99.8 | Plus |
CG18769-PF | 858 | CG18769-RF | 1..617 | 260..876 | 3060 | 99.8 | Plus |
CG18769-PE | 858 | CG18769-RE | 1..617 | 260..876 | 3060 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:09:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1811 | CG18769-RD | 282..1164 | 16..897 | 4375 | 99.8 | Plus |
CG18769-RB | 2623 | CG18769-RB | 1094..1976 | 16..897 | 4375 | 99.8 | Plus |
CG18769-RC | 1778 | CG18769-RC | 249..1131 | 16..897 | 4375 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:09:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6590602..6590835 | 229..462 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 6591212..6591418 | 669..875 | 1020 | 99.5 | Plus |
3L | 28110227 | 3L | 6551832..6551949 | 16..133 | 590 | 100 | Plus |
3L | 28110227 | 3L | 6590891..6590999 | 460..568 | 545 | 100 | Plus |
3L | 28110227 | 3L | 6591055..6591160 | 565..670 | 530 | 100 | Plus |
3L | 28110227 | 3L | 6562321..6562418 | 133..230 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:09:53 has no hits.
BO08428.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:50 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PB | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:25 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-PD | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:20:56 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 241..1131 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:08 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 241..1131 | 10..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:08 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6590604..6590835 | 231..462 | 100 | -> | Plus |
3L | 6590894..6590999 | 463..568 | 100 | -> | Plus |
3L | 6591059..6591160 | 569..670 | 100 | -> | Plus |
3L | 6591214..6591417 | 671..874 | 99 | -> | Plus |
3L | 6591479..6591502 | 875..897 | 95 | | Plus |
3L | 6551824..6551949 | 10..133 | 97 | -> | Plus |
3L | 6562322..6562418 | 134..230 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:20:56 Download gff for
BO08428.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6544924..6545049 | 10..133 | 97 | -> | Plus |
arm_3L | 6555422..6555518 | 134..230 | 100 | -> | Plus |
arm_3L | 6583704..6583935 | 231..462 | 100 | -> | Plus |
arm_3L | 6583994..6584099 | 463..568 | 100 | -> | Plus |
arm_3L | 6584159..6584260 | 569..670 | 100 | -> | Plus |
arm_3L | 6584314..6584517 | 671..874 | 99 | -> | Plus |
arm_3L | 6584579..6584602 | 875..897 | 95 | | Plus |
BO08428.complete Sequence
1132 bp (1132 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631188
> BO08428.complete
GAAGTTATCAGTCGACATGTCCAGAAATAGGGCTGCCATGGTCAGCGCCT
TTCGGCTCTTCCTGCGACCAGCGACCACCACCACCCATAGAAGTCTCGCC
CTGCGTTTGGCCCCCGGCACCACCTTCGCCCTGCACTTACGGCCATGTCA
TGAGCTTCAGCAGCACAGAAGCTTCGCATCCACGGCGGAGGATGGCGAAA
CGGACAAGCATAAAAAACCGACGACGGGAGAAGACATCTATGTGGAATAC
GTGAATGGCATGCCACACATGACTGTACGACTTCCCAGTCGCAATGAACT
CTGCCAGTTTGCCCTGAAACCCATCTCCCACAACGTTGGTGATCTGTTAG
CCATGCTCAGGGCTGAGGATCGGGGCATCGATCGAGCTGCGGTGATCAAC
AAGCATGGTGTGCGAATCGCGTCGTCCTGCACCATCGAAAGCTTGCTGGA
TGACTCGTTTAGCATACAAATCAACAATCGCACATTGGATGTGAATCCTC
CCAAACGTGACAAAGTCACATTGGAGTCCATGGACAAAGTGGGCGATGTT
CGTAAGGTTATTGCTCAGCTCTACGAGGCATTCAACGTCGGAGAATATCA
GCTGGAGAAGAGCAATCAATTGGCCAAAGAACTGGAGACCCTACGCTATG
AACTAGAACCACTGGAAGAGAAAAAACTGGAACTCAGCAAAAAGGCCGCT
CGTCGCACTAACTTTATGACTTGGATGGGTTTGGGCCTAATGTCGGTGCA
ATTTGGCATTTTGGCACGACTGACTTGGTGGGAATACTCTTGGGATATTA
TGGAACCCGTTACATATTTTGTTACTTACGGGACGACAATGGCAATGTAT
GCCTACTATTGTGTCACTAAGAGGGAATATATGATGGAGGATGTGAAGAA
TCGCGAATTCTCACTTTCCCTTTATAGGAACGCCAAAAAGGTTCAGTTCG
ATGTAGAACACTACAACGAACTGAAGCGAAAGTCGGCGGAGTTGGAGTAC
AATCTCAGAAGGATCAACGACCCGCTCAACATGCAATTGCCATCGCATTT
GGTTCGGACCCAGGAAAACACGCCACCAACCTTAACTGAGGAAAAGGCGG
AGCGGAAATACACTGCAAGCTTTCTAGACCAT
BO08428.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1101 | CG18769-PD | 1..1098 | 17..1114 | 5490 | 100 | Plus |
CG18769-RB | 1101 | CG18769-PB | 1..1098 | 17..1114 | 5490 | 100 | Plus |
CG18769-RC | 1101 | CG18769-PC | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-RD | 1811 | CG18769-RD | 282..1380 | 16..1114 | 5495 | 100 | Plus |
CG18769-RB | 2623 | CG18769-RB | 1094..2192 | 16..1114 | 5495 | 100 | Plus |
CG18769-RC | 1778 | CG18769-RC | 249..1347 | 16..1114 | 5495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 6591478..6591718 | 874..1114 | 1205 | 100 | Plus |
3L | 28110227 | 3L | 6590602..6590835 | 229..462 | 1170 | 100 | Plus |
3L | 28110227 | 3L | 6591212..6591418 | 669..875 | 1035 | 100 | Plus |
3L | 28110227 | 3L | 6551832..6551949 | 16..133 | 590 | 100 | Plus |
3L | 28110227 | 3L | 6590891..6590999 | 460..568 | 545 | 100 | Plus |
3L | 28110227 | 3L | 6591055..6591160 | 565..670 | 530 | 100 | Plus |
3L | 28110227 | 3L | 6562321..6562418 | 133..230 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:34:09 has no hits.
BO08428.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:23 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1..1101 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:56:50 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1095..2192 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:51 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 250..1347 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:23 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RB | 1086..2196 | 10..1119 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:41 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG18769-RC | 250..1347 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:41 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 6590604..6590835 | 231..462 | 100 | -> | Plus |
3L | 6590894..6590999 | 463..568 | 100 | -> | Plus |
3L | 6591059..6591160 | 569..670 | 100 | -> | Plus |
3L | 6591214..6591417 | 671..874 | 100 | -> | Plus |
3L | 6591479..6591718 | 875..1116 | 99 | | Plus |
3L | 6562322..6562418 | 134..230 | 100 | -> | Plus |
3L | 6551833..6551949 | 17..133 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:51 Download gff for
BO08428.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 6544933..6545049 | 17..133 | 100 | -> | Plus |
arm_3L | 6555422..6555518 | 134..230 | 100 | -> | Plus |
arm_3L | 6583704..6583935 | 231..462 | 100 | -> | Plus |
arm_3L | 6583994..6584099 | 463..568 | 100 | -> | Plus |
arm_3L | 6584159..6584260 | 569..670 | 100 | -> | Plus |
arm_3L | 6584314..6584517 | 671..874 | 100 | -> | Plus |
arm_3L | 6584579..6584818 | 875..1116 | 99 | | Plus |
BO08428.pep Sequence
Translation from 16 to 1132
> BO08428.pep
MSRNRAAMVSAFRLFLRPATTTTHRSLALRLAPGTTFALHLRPCHELQQH
RSFASTAEDGETDKHKKPTTGEDIYVEYVNGMPHMTVRLPSRNELCQFAL
KPISHNVGDLLAMLRAEDRGIDRAAVINKHGVRIASSCTIESLLDDSFSI
QINNRTLDVNPPKRDKVTLESMDKVGDVRKVIAQLYEAFNVGEYQLEKSN
QLAKELETLRYELEPLEEKKLELSKKAARRTNFMTWMGLGLMSVQFGILA
RLTWWEYSWDIMEPVTYFVTYGTTMAMYAYYCVTKREYMMEDVKNREFSL
SLYRNAKKVQFDVEHYNELKRKSAELEYNLRRINDPLNMQLPSHLVRTQE
NTPPTLTEEKAERKYTASFLDH
BO08428.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG18769-PD | 366 | CG18769-PD | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PB | 366 | CG18769-PB | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PC | 366 | CG18769-PC | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PA | 366 | CG18769-PA | 1..366 | 1..366 | 1901 | 100 | Plus |
CG18769-PI | 365 | CG18769-PI | 1..365 | 1..366 | 1884 | 99.7 | Plus |