Clone BO08431 Report

Search the DGRC for BO08431

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:31
Vector:pDNR-Dual
Associated Gene/Transcriptexu-RA
Protein status:BO08431.pep: validated full length
Sequenced Size:1630

Clone Sequence Records

BO08431.3prime Sequence

934 bp (824 high quality bases) assembled on 2006-01-06

> BO08431.3prime
ATGGTCTAGAAAGCTTGCGTTGGAGGCCGTGATGGCCACCGGTGTCGGTG
AGGGTTGTGCCACGACTGGGCTTATGGTTACGGCAGGTGGAGCGCTATTG
TTGAGCTCAGACACGCCTGAGGAGGATATTTCAGCAGCAACCTTGAGTCC
ATTGGGGGTTGCACCCAAGCTTTGACGCGAGTTGCGCTTACGGTGCATAC
GCGGCTTGTTTGGCGAGGGAGTCTTGGTAGTAGAGTCGGGCAACGAGGAA
ACGCTGCGCGACTTGTCACCTCCTGCTCCAAACTCGGTGCTAGCCGATGG
GGAGCTGGATGGCCTAGCGTCCTTCACCGATTGGCGGCCGCCGCGTCGAT
TGCGACGACGATAATTGTTATTATTGTTGCTGTTACCCTTGACAACCGGC
TTCACCGTGGTCTTCTTGGGATCGAAATAGCTGTCCAGAAGCTCGAGCAG
CTCCGCCTTGTCCTTGCTCTTTAGCCGGCCAATTGACTGCAGGGCTATGT
CCAGGCCCTCGATGTTTTTCTCTGCCCAGATGGCACTTAGCGTGTTCAAA
TCGAACCCATTCTCGGCCAGCACAATGCGGAACTTTACGGCACGCACACG
ATGGTACAGAGTGGTCTTGAAGTAGTTCAGGAACACCGGACGGAAGGAGT
TTTGACGCTCCAAATTTTCGATCTGGATATCCAGCTCCAGGACATCGGAC
ACCACCAACTTGGCAAACGGACGTATGGCATTAAACATATTCTCCAATGC
CTCCGAGCTTTTTGGTTCCGGCTTGCCGTCGGAGTTGCTCAGCTGAAGGG
CCACATCAAAGGCCAATTTGGCACGAACACTGGCATTGCCATCAAACAGT
TCCCGCTTACCCTGAACGGCGTTCTTGCTAGATTGCTTATCGTCACCATT
GGTCACGGTACTGTCCCTGGGGGATATCGATACC

BO08431.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8994-PA 1599 exu-RA 681..1596 934..19 4580 100 Minus
CG8994-PB 1599 exu-RB 681..1596 934..19 4580 100 Minus
CG8994-PC 1599 exu-RC 681..1596 934..19 4580 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
exu-RD 2631 CG8994-RD 832..1747 934..19 4580 100 Minus
exu-RC 2621 CG8994-RC 822..1737 934..19 4580 100 Minus
exu-RB 1988 CG8994-RB 822..1737 934..19 4580 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20668603..20669518 19..934 4580 100 Plus
Blast to na_te.dros performed on 2015-02-10 23:36:16 has no hits.

BO08431.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:53 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
exu-PB 681..1599 15..934 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:29 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8994-PC 681..1599 15..934 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:54 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
exu-RB 822..1740 15..934 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:56 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
exu-RB 822..1740 15..934 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:56 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 20668599..20669518 15..934 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:54 Download gff for BO08431.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16556104..16557023 15..934 99   Plus

BO08431.5prime Sequence

876 bp (809 high quality bases) assembled on 2006-01-06

> BO08431.5prime
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGGCAGCCGGAACCAAAAAGCTC

BO08431.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG8994-PA 1599 exu-RA 1..860 17..876 4250 99.7 Plus
CG8994-PB 1599 exu-RB 1..860 17..876 4250 99.7 Plus
CG8994-PC 1599 exu-RC 1..860 17..876 4250 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:23:22
Subject Length Description Subject Range Query Range Score Percent Strand
exu-RD 2631 CG8994-RD 152..1011 17..876 4270 99.8 Plus
exu-RC 2621 CG8994-RC 142..1001 17..876 4270 99.8 Plus
exu-RB 1988 CG8994-RB 142..1001 17..876 4270 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20669339..20669897 876..318 2765 99.6 Minus
2R 25286936 2R 20669979..20670133 319..165 775 100 Minus
2R 25286936 2R 20670201..20670350 166..17 750 100 Minus
Blast to na_te.dros performed on 2015-02-02 10:23:18 has no hits.

BO08431.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:54 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
exu-PB 1..860 17..876 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:30 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8994-PC 1..860 17..876 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:47 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
exu-RB 137..1001 10..876 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:49 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
exu-RB 137..1001 10..876 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:49 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 20669339..20669895 320..876 99 <- Minus
2R 20669979..20670131 167..319 100 <- Minus
2R 20670201..20670355 10..166 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:47 Download gff for BO08431.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16556844..16557400 320..876 99 <- Minus
arm_2R 16557484..16557636 167..319 100 <- Minus
arm_2R 16557706..16557860 10..166 97   Minus

BO08431.complete Sequence

1630 bp (1630 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631189

> BO08431.complete
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGCAAGCCGGAACCAAAAAGCTCGGAGGCATTGGAGAATATGTTTAA
TGCCATACGTCCGTTTGCCAAGTTGGTGGTGTCCGATGTCCTGGAGCTGG
ATATCCAGATCGAAAATTTGGAGCGTCAAAACTCCTTCCGTCCGGTGTTC
CTGAACTACTTCAAGACCACTCTGTACCATCGTGTGCGTGCCGTAAAGTT
CCGCATTGTGCTGGCCGAGAATGGGTTCGATTTGAACACGCTAAGTGCCA
TCTGGGCAGAGAAAAACATCGAGGGCCTGGACATAGCCCTGCAGTCAATT
GGCCGGCTAAAGAGCAAGGACAAGGCGGAGCTGCTCGAGCTTCTGGACAG
CTATTTCGATCCCAAGAAGACCACGGTGAAGCCGGTTGTCAAGGGTAACA
GCAACAATAATAACAATTATCGTCGTCGCAATCGACGCGGCGGCCGCCAA
TCGGTGAAGGACGCTAGGCCATCCAGCTCCCCATCGGCTAGCACCGAGTT
TGGAGCAGGAGGTGACAAGTCGCGCAGCGTTTCCTCGTTGCCCGACTCTA
CTACCAAGACTCCCTCGCCAAACAAGCCGCGTATGCACCGTAAGCGCAAC
TCGCGTCAAAGCTTGGGTGCAACCCCCAATGGACTCAAGGTTGCTGCTGA
AATATCCTCCTCAGGCGTGTCTGAGCTCAACAATAGCGCTCCACCTGCCG
TAACCATAAGCCCAGTCGTGGCACAACCCTCACCGACACCGGTGGCCATC
ACGGCCTCCAACGCAAGCTTTCTAGACCAT

BO08431.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:58
Subject Length Description Subject Range Query Range Score Percent Strand
exu-RD 1599 CG8994-PD 1..1596 17..1612 7980 100 Plus
exu-RC 1599 CG8994-PC 1..1596 17..1612 7980 100 Plus
exu-RB 1599 CG8994-PB 1..1596 17..1612 7980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
exu-RD 2631 CG8994-RD 152..1747 17..1612 7980 100 Plus
exu-RC 2621 CG8994-RC 142..1737 17..1612 7980 100 Plus
exu-RB 1988 CG8994-RB 142..1737 17..1612 7980 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20668603..20669897 1612..318 6475 100 Minus
2R 25286936 2R 20669979..20670133 319..165 775 100 Minus
2R 25286936 2R 20670201..20670350 166..17 750 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:02:57 has no hits.

BO08431.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:24 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 1..1599 17..1616 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:23 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 23..1626 10..1616 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:37 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 142..1737 17..1614 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:25 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RC 23..1626 10..1616 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:38 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
exu-RB 142..1737 17..1614 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:38 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20668601..20669895 320..1614 99 <- Minus
2R 20669979..20670131 167..319 100 <- Minus
2R 20670201..20670350 17..166 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:37 Download gff for BO08431.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16556106..16557400 320..1614 99 <- Minus
arm_2R 16557484..16557636 167..319 100 <- Minus
arm_2R 16557706..16557855 17..166 100   Minus

BO08431.pep Sequence

Translation from 16 to 1630

> BO08431.pep
MVADNIDAGVAIAVADQSSSPVGDKVELPAGNYILVGVDIDTTGRRLMDE
IVQLAAYTPTDHFEQYIMPYMNLNPAARQRHQVRVISIGFYRMLKSMQTY
KIIKSKSEIAALKDFLNWLEQLKTKAGPSSDGIVLIYHEERKFIPYMILE
SLKKYGLLERFTASVKSFANSINLAKASIGDANIKNYSLRKLSKILSTTK
EEDAACSASTSGSGSGLGSGSSMVSDSVSISPRDSTVTNGDDKQSSKNAV
QGKRELFDGNASVRAKLAFDVALQLSNSDGKPEPKSSEALENMFNAIRPF
AKLVVSDVLELDIQIENLERQNSFRPVFLNYFKTTLYHRVRAVKFRIVLA
ENGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELLDSYFDPK
KTTVKPVVKGNSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGD
KSRSVSSLPDSTTKTPSPNKPRMHRKRNSRQSLGATPNGLKVAAEISSSG
VSELNNSAPPAVTISPVVAQPSPTPVAITASNASFLDH

BO08431.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
exu-PD 532 CG8994-PD 1..532 1..532 2660 100 Plus
exu-PC 532 CG8994-PC 1..532 1..532 2660 100 Plus
exu-PB 532 CG8994-PB 1..532 1..532 2660 100 Plus
exu-PA 532 CG8994-PA 1..532 1..532 2660 100 Plus