Clone Sequence Records
BO08431.3prime Sequence
934 bp (824 high quality bases) assembled on 2006-01-06
> BO08431.3prime
ATGGTCTAGAAAGCTTGCGTTGGAGGCCGTGATGGCCACCGGTGTCGGTG
AGGGTTGTGCCACGACTGGGCTTATGGTTACGGCAGGTGGAGCGCTATTG
TTGAGCTCAGACACGCCTGAGGAGGATATTTCAGCAGCAACCTTGAGTCC
ATTGGGGGTTGCACCCAAGCTTTGACGCGAGTTGCGCTTACGGTGCATAC
GCGGCTTGTTTGGCGAGGGAGTCTTGGTAGTAGAGTCGGGCAACGAGGAA
ACGCTGCGCGACTTGTCACCTCCTGCTCCAAACTCGGTGCTAGCCGATGG
GGAGCTGGATGGCCTAGCGTCCTTCACCGATTGGCGGCCGCCGCGTCGAT
TGCGACGACGATAATTGTTATTATTGTTGCTGTTACCCTTGACAACCGGC
TTCACCGTGGTCTTCTTGGGATCGAAATAGCTGTCCAGAAGCTCGAGCAG
CTCCGCCTTGTCCTTGCTCTTTAGCCGGCCAATTGACTGCAGGGCTATGT
CCAGGCCCTCGATGTTTTTCTCTGCCCAGATGGCACTTAGCGTGTTCAAA
TCGAACCCATTCTCGGCCAGCACAATGCGGAACTTTACGGCACGCACACG
ATGGTACAGAGTGGTCTTGAAGTAGTTCAGGAACACCGGACGGAAGGAGT
TTTGACGCTCCAAATTTTCGATCTGGATATCCAGCTCCAGGACATCGGAC
ACCACCAACTTGGCAAACGGACGTATGGCATTAAACATATTCTCCAATGC
CTCCGAGCTTTTTGGTTCCGGCTTGCCGTCGGAGTTGCTCAGCTGAAGGG
CCACATCAAAGGCCAATTTGGCACGAACACTGGCATTGCCATCAAACAGT
TCCCGCTTACCCTGAACGGCGTTCTTGCTAGATTGCTTATCGTCACCATT
GGTCACGGTACTGTCCCTGGGGGATATCGATACC
BO08431.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8994-PA | 1599 | exu-RA | 681..1596 | 934..19 | 4580 | 100 | Minus |
CG8994-PB | 1599 | exu-RB | 681..1596 | 934..19 | 4580 | 100 | Minus |
CG8994-PC | 1599 | exu-RC | 681..1596 | 934..19 | 4580 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:36:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 832..1747 | 934..19 | 4580 | 100 | Minus |
exu-RC | 2621 | CG8994-RC | 822..1737 | 934..19 | 4580 | 100 | Minus |
exu-RB | 1988 | CG8994-RB | 822..1737 | 934..19 | 4580 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 23:36:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20668603..20669518 | 19..934 | 4580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 23:36:16 has no hits.
BO08431.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:53 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-PB | 681..1599 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:29 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8994-PC | 681..1599 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:04:54 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 822..1740 | 15..934 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:18:56 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 822..1740 | 15..934 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 01:18:56 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20668599..20669518 | 15..934 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:04:54 Download gff for
BO08431.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556104..16557023 | 15..934 | 99 | | Plus |
BO08431.5prime Sequence
876 bp (809 high quality bases) assembled on 2006-01-06
> BO08431.5prime
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGGCAGCCGGAACCAAAAAGCTC
BO08431.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8994-PA | 1599 | exu-RA | 1..860 | 17..876 | 4250 | 99.7 | Plus |
CG8994-PB | 1599 | exu-RB | 1..860 | 17..876 | 4250 | 99.7 | Plus |
CG8994-PC | 1599 | exu-RC | 1..860 | 17..876 | 4250 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 10:23:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 152..1011 | 17..876 | 4270 | 99.8 | Plus |
exu-RC | 2621 | CG8994-RC | 142..1001 | 17..876 | 4270 | 99.8 | Plus |
exu-RB | 1988 | CG8994-RB | 142..1001 | 17..876 | 4270 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 10:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20669339..20669897 | 876..318 | 2765 | 99.6 | Minus |
2R | 25286936 | 2R | 20669979..20670133 | 319..165 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20670201..20670350 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 10:23:18 has no hits.
BO08431.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:54 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-PB | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:30 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8994-PC | 1..860 | 17..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:28:47 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 137..1001 | 10..876 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:38:49 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 137..1001 | 10..876 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:38:49 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20669339..20669895 | 320..876 | 99 | <- | Minus |
2R | 20669979..20670131 | 167..319 | 100 | <- | Minus |
2R | 20670201..20670355 | 10..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:28:47 Download gff for
BO08431.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556844..16557400 | 320..876 | 99 | <- | Minus |
arm_2R | 16557484..16557636 | 167..319 | 100 | <- | Minus |
arm_2R | 16557706..16557860 | 10..166 | 97 | | Minus |
BO08431.complete Sequence
1630 bp (1630 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631189
> BO08431.complete
GAAGTTATCAGTCGACATGGTTGCCGATAACATCGATGCCGGAGTGGCCA
TTGCCGTCGCCGATCAATCCTCGTCGCCCGTGGGCGATAAAGTTGAGCTG
CCGGCCGGTAATTATATCCTGGTGGGCGTGGATATCGACACCACTGGACG
TCGTCTAATGGATGAGATTGTCCAGCTGGCCGCTTATACACCCACCGACC
ACTTCGAGCAGTACATCATGCCATATATGAATCTGAATCCAGCTGCTCGC
CAGCGTCATCAAGTTCGTGTTATTTCGATTGGCTTTTATCGTATGCTGAA
GTCGATGCAGACTTATAAGATCATTAAATCCAAGTCTGAGATCGCTGCCC
TCAAGGACTTCCTCAACTGGCTTGAGCAACTGAAGACCAAGGCGGGTCCC
AGCTCGGACGGGATTGTGCTTATCTATCATGAAGAGCGCAAGTTCATTCC
CTACATGATCCTGGAGTCGTTGAAGAAGTACGGCCTGTTGGAGCGCTTCA
CCGCGTCGGTGAAGTCGTTTGCAAACAGCATCAATCTGGCCAAGGCTTCC
ATTGGCGATGCCAACATAAAGAACTACAGTCTGCGAAAGCTTTCCAAGAT
CTTGTCCACGACCAAGGAGGAAGACGCGGCTTGCTCTGCGTCCACATCTG
GATCTGGATCTGGCTTGGGATCTGGATCTAGTATGGTGTCCGATTCGGTA
TCGATATCCCCCAGGGACAGTACCGTGACCAATGGTGACGATAAGCAATC
TAGCAAGAACGCCGTTCAGGGTAAGCGGGAACTGTTTGATGGCAATGCCA
GTGTTCGTGCCAAATTGGCCTTTGATGTGGCCCTTCAGCTGAGCAACTCC
GACGGCAAGCCGGAACCAAAAAGCTCGGAGGCATTGGAGAATATGTTTAA
TGCCATACGTCCGTTTGCCAAGTTGGTGGTGTCCGATGTCCTGGAGCTGG
ATATCCAGATCGAAAATTTGGAGCGTCAAAACTCCTTCCGTCCGGTGTTC
CTGAACTACTTCAAGACCACTCTGTACCATCGTGTGCGTGCCGTAAAGTT
CCGCATTGTGCTGGCCGAGAATGGGTTCGATTTGAACACGCTAAGTGCCA
TCTGGGCAGAGAAAAACATCGAGGGCCTGGACATAGCCCTGCAGTCAATT
GGCCGGCTAAAGAGCAAGGACAAGGCGGAGCTGCTCGAGCTTCTGGACAG
CTATTTCGATCCCAAGAAGACCACGGTGAAGCCGGTTGTCAAGGGTAACA
GCAACAATAATAACAATTATCGTCGTCGCAATCGACGCGGCGGCCGCCAA
TCGGTGAAGGACGCTAGGCCATCCAGCTCCCCATCGGCTAGCACCGAGTT
TGGAGCAGGAGGTGACAAGTCGCGCAGCGTTTCCTCGTTGCCCGACTCTA
CTACCAAGACTCCCTCGCCAAACAAGCCGCGTATGCACCGTAAGCGCAAC
TCGCGTCAAAGCTTGGGTGCAACCCCCAATGGACTCAAGGTTGCTGCTGA
AATATCCTCCTCAGGCGTGTCTGAGCTCAACAATAGCGCTCCACCTGCCG
TAACCATAAGCCCAGTCGTGGCACAACCCTCACCGACACCGGTGGCCATC
ACGGCCTCCAACGCAAGCTTTCTAGACCAT
BO08431.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:02:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 1599 | CG8994-PD | 1..1596 | 17..1612 | 7980 | 100 | Plus |
exu-RC | 1599 | CG8994-PC | 1..1596 | 17..1612 | 7980 | 100 | Plus |
exu-RB | 1599 | CG8994-PB | 1..1596 | 17..1612 | 7980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-RD | 2631 | CG8994-RD | 152..1747 | 17..1612 | 7980 | 100 | Plus |
exu-RC | 2621 | CG8994-RC | 142..1737 | 17..1612 | 7980 | 100 | Plus |
exu-RB | 1988 | CG8994-RB | 142..1737 | 17..1612 | 7980 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:02:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 20668603..20669897 | 1612..318 | 6475 | 100 | Minus |
2R | 25286936 | 2R | 20669979..20670133 | 319..165 | 775 | 100 | Minus |
2R | 25286936 | 2R | 20670201..20670350 | 166..17 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:02:57 has no hits.
BO08431.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:24 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 1..1599 | 17..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:23 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 23..1626 | 10..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:15:37 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 142..1737 | 17..1614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:25 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RC | 23..1626 | 10..1616 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:38 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
exu-RB | 142..1737 | 17..1614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:38 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 20668601..20669895 | 320..1614 | 99 | <- | Minus |
2R | 20669979..20670131 | 167..319 | 100 | <- | Minus |
2R | 20670201..20670350 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:15:37 Download gff for
BO08431.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 16556106..16557400 | 320..1614 | 99 | <- | Minus |
arm_2R | 16557484..16557636 | 167..319 | 100 | <- | Minus |
arm_2R | 16557706..16557855 | 17..166 | 100 | | Minus |
BO08431.pep Sequence
Translation from 16 to 1630
> BO08431.pep
MVADNIDAGVAIAVADQSSSPVGDKVELPAGNYILVGVDIDTTGRRLMDE
IVQLAAYTPTDHFEQYIMPYMNLNPAARQRHQVRVISIGFYRMLKSMQTY
KIIKSKSEIAALKDFLNWLEQLKTKAGPSSDGIVLIYHEERKFIPYMILE
SLKKYGLLERFTASVKSFANSINLAKASIGDANIKNYSLRKLSKILSTTK
EEDAACSASTSGSGSGLGSGSSMVSDSVSISPRDSTVTNGDDKQSSKNAV
QGKRELFDGNASVRAKLAFDVALQLSNSDGKPEPKSSEALENMFNAIRPF
AKLVVSDVLELDIQIENLERQNSFRPVFLNYFKTTLYHRVRAVKFRIVLA
ENGFDLNTLSAIWAEKNIEGLDIALQSIGRLKSKDKAELLELLDSYFDPK
KTTVKPVVKGNSNNNNNYRRRNRRGGRQSVKDARPSSSPSASTEFGAGGD
KSRSVSSLPDSTTKTPSPNKPRMHRKRNSRQSLGATPNGLKVAAEISSSG
VSELNNSAPPAVTISPVVAQPSPTPVAITASNASFLDH
BO08431.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
exu-PD | 532 | CG8994-PD | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PC | 532 | CG8994-PC | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PB | 532 | CG8994-PB | 1..532 | 1..532 | 2660 | 100 | Plus |
exu-PA | 532 | CG8994-PA | 1..532 | 1..532 | 2660 | 100 | Plus |