Clone Sequence Records
BO08432.3prime Sequence
892 bp (873 high quality bases) assembled on 2006-01-06
> BO08432.3prime
ATGGTCTAGAAAGCTTGCCTTCCTGGGCAGGCGACCAGCACGCTCCATGG
TGGCATCCTGGAGCTCCCAGGCGGGCCGATAGCCACCCAGATCGCAGGAG
CAGACGGCATCGGAATTAGAACCACATTCACACTCGGCATCGGTGCGTCG
GAGGTGCGGATTAGGCACTGTGTTCGCACGATTCCCGATCGAGGTGTAGC
CCCGATCGTACAGGCTGCAATAGGGCACCGAGTTCAAGTGGATGTAGTGC
CAGACGTCGTGGTAGCTCCACTCCAGCAGCGGATTCAGGCGCATCATCGG
CGGCCAGTCGTTGTCCGTGGGCTGCATGGGCGCCAGATGCTGGCAGTAGG
GATCCGTGTTGCGGCTGCCCACGAAGACGGCCTTGATCCGCGGCATGTCC
GACGACATGTGGGTGAGTGCCTCCTTGAGCGTACCCTCGTACTGAACCAA
CTGGACGCGGTAGTTGCGTACGCAACGCTCGACGAACTCATCGATTTCCG
GAAACGAATCGCCGGATTTAATGTACAGCATGGGAATGTCGCCGCTGGAG
ATGTTCTCCTGGCGCAGGTAACGCATAAGGAGATCGAGCAGCACGGTGCA
ATCCTTGCCGCCGTTGAAACAGAAAATTAGCTCCTCGACGCCGTAGATTT
GCAGGGTTTCGGCGAAGAAGGCGAACGCTTTATTTTGCCGCTCCTCAATG
GCCAGTCGATCCTCGGCTGTTAGTTCCATTGGATTTGATATATCCTGTCC
CTTTGCCACATCCTTGGAGTTCTCCGAACGATCCGACATGCTCCGTTTCT
CTAGAAACAAATGCTTTTTGCTAATGCTCTTTGCGCATAGAATGCTGTTG
TTCGCTGTAATGTTTGTGATGTTTGTGATGTTCTTCCGGCAT
BO08432.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 969 | CG4407-RA | 93..966 | 892..19 | 4370 | 100 | Minus |
CG4407-PB | 885 | CG4407-RB | 9..882 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 16:50:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RB | 1235 | CG4407-RB | 166..1039 | 892..19 | 4370 | 100 | Minus |
CG4407-RA | 1338 | CG4407-RA | 269..1142 | 892..19 | 4370 | 100 | Minus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 314..194 | 185 | 76.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 16:50:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902886 | 322..892 | 2855 | 100 | Plus |
X | 23542271 | X | 12901549..12901853 | 19..323 | 1525 | 100 | Plus |
2L | 23513712 | 2L | 13413068..13413188 | 314..194 | 185 | 76.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 16:50:05 has no hits.
BO08432.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:55 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PB | 9..885 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:31 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PB | 9..885 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:25:27 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 269..1149 | 11..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:01:23 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 269..1149 | 11..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:01:23 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901542..12901851 | 11..321 | 98 | <- | Plus |
X | 12902316..12902886 | 322..892 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:25:27 Download gff for
BO08432.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795575..12795884 | 11..321 | 98 | <- | Plus |
arm_X | 12796349..12796919 | 322..892 | 100 | | Plus |
BO08432.5prime Sequence
888 bp (815 high quality bases) assembled on 2006-01-06
> BO08432.5prime
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATTC
BO08432.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 969 | CG4407-RA | 1..872 | 17..888 | 4360 | 100 | Plus |
CG4407-PB | 885 | CG4407-RB | 1..788 | 101..888 | 3940 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:14:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 1338 | CG4407-RA | 175..1048 | 15..888 | 4370 | 100 | Plus |
CG4407-RB | 1235 | CG4407-RB | 86..945 | 29..888 | 4300 | 100 | Plus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 687..807 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902967 | 679..28 | 3260 | 100 | Minus |
X | 23542271 | X | 12901643..12901853 | 888..678 | 1055 | 100 | Minus |
2L | 23513712 | 2L | 13413068..13413188 | 687..807 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:14:40 has no hits.
BO08432.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:56 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:33 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-PA | 1..872 | 17..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:30:33 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 175..1048 | 15..888 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:59:01 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 175..1048 | 15..888 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:59:01 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901643..12901851 | 680..888 | 100 | <- | Minus |
X | 12902316..12902966 | 29..679 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:30:33 Download gff for
BO08432.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795676..12795884 | 680..888 | 100 | <- | Minus |
arm_X | 12796349..12796999 | 29..679 | 100 | <- | Minus |
BO08432.complete Sequence
1000 bp (1000 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631190
> BO08432.complete
GAAGTTATCAGTCGACATGAGCTATTGGCGTGTGACGTCATCGTTTTTGC
TAGCCAGGGCACGGCCACGCCTCCCACAAACATTACGCCCACTGAGCACC
ATGAACGAATGCCGGAAGAACATCACAAACATCACAAACATTACAGCGAA
CAACAGCATTCTATGCGCAAAGAGCATTAGCAAAAAGCATTTGTTTCTAG
AGAAACGGAGCATGTCGGATCGTTCGGAGAACTCCAAGGATGTGGCAAAG
GGACAGGATATATCAAATCCAATGGAACTAACAGCCGAGGATCGACTGGC
CATTGAGGAGCGGCAAAATAAAGCGTTCGCCTTCTTCGCCGAAACCCTGC
AAATCTACGGCGTCGAGGAGCTAATTTTCTGTTTCAACGGCGGCAAGGAT
TGCACCGTGCTGCTCGATCTCCTTATGCGTTACCTGCGCCAGGAGAACAT
CTCCAGCGGCGACATTCCCATGCTGTACATTAAATCCGGCGATTCGTTTC
CGGAAATCGATGAGTTCGTCGAGCGTTGCGTACGCAACTACCGCGTCCAG
TTGGTTCAGTACGAGGGTACGCTCAAGGAGGCACTCACCCACATGTCGTC
GGACATGCCGCGGATCAAGGCCGTCTTCGTGGGCAGCCGCAACACGGATC
CCTACTGCCAGCATCTGGCGCCCATGCAGCCCACGGACAACGACTGGCCG
CCGATGATGCGCCTGAATCCGCTGCTGGAGTGGAGCTACCACGACGTCTG
GCACTACATCCACTTGAACTCGGTGCCCTATTGCAGCCTGTACGATCGGG
GCTACACCTCGATCGGGAATCGTGCGAACACAGTGCCTAATCCGCACCTC
CGACGCACCGATGCCGAGTGTGAATGTGGTTCTAATTCCGATGCCGTCTG
CTCCTGCGATCTGGGTGGCTATCGGCCCGCCTGGGAGCTCCAGGATGCCA
CCATGGAGCGTGCTGGTCGCCTGCCCAGGAAGGCAAGCTTTCTAGACCAT
BO08432.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:10:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 969 | CG4407-PA | 1..966 | 17..982 | 4830 | 100 | Plus |
CG4407-RB | 885 | CG4407-PB | 1..882 | 101..982 | 4410 | 100 | Plus |
CG16848-RA | 765 | CG16848-PA | 476..596 | 687..807 | 185 | 76.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-RA | 1338 | CG4407-RA | 175..1142 | 15..982 | 4840 | 100 | Plus |
CG4407-RB | 1235 | CG4407-RB | 86..1039 | 29..982 | 4770 | 100 | Plus |
CG16848-RA | 1198 | CG16848-RA | 550..670 | 687..807 | 185 | 76.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:10:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 12902316..12902967 | 679..28 | 3260 | 100 | Minus |
X | 23542271 | X | 12901549..12901853 | 982..678 | 1525 | 100 | Minus |
2L | 23513712 | 2L | 13413068..13413188 | 687..807 | 185 | 76.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:10:30 has no hits.
BO08432.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:08 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 1..969 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:02 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 142..1116 | 15..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:38 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 177..1142 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:08 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 142..1116 | 15..990 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:52 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4407-RA | 177..1142 | 17..984 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:52 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 12901547..12901851 | 680..984 | 99 | <- | Minus |
X | 12902316..12902972 | 23..679 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:38 Download gff for
BO08432.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 12795580..12795884 | 680..984 | 99 | <- | Minus |
arm_X | 12796349..12797005 | 23..679 | 99 | | Minus |
BO08432.pep Sequence
Translation from 16 to 1000
> BO08432.pep
MSYWRVTSSFLLARARPRLPQTLRPLSTMNECRKNITNITNITANNSILC
AKSISKKHLFLEKRSMSDRSENSKDVAKGQDISNPMELTAEDRLAIEERQ
NKAFAFFAETLQIYGVEELIFCFNGGKDCTVLLDLLMRYLRQENISSGDI
PMLYIKSGDSFPEIDEFVERCVRNYRVQLVQYEGTLKEALTHMSSDMPRI
KAVFVGSRNTDPYCQHLAPMQPTDNDWPPMMRLNPLLEWSYHDVWHYIHL
NSVPYCSLYDRGYTSIGNRANTVPNPHLRRTDAECECGSNSDAVCSCDLG
GYRPAWELQDATMERAGRLPRKASFLDH
BO08432.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4407-PA | 322 | CG4407-PA | 1..322 | 1..322 | 1724 | 100 | Plus |
CG4407-PB | 294 | CG4407-PB | 1..294 | 29..322 | 1581 | 100 | Plus |
CG16848-PA | 254 | CG16848-PA | 50..241 | 111..318 | 471 | 43.3 | Plus |