Clone BO08433 Report

Search the DGRC for BO08433

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptrogdi-RA
Protein status:BO08433.pep: validated not full length
Sequenced Size:838

Clone Sequence Records

BO08433.3prime Sequence

836 bp (835 high quality bases) assembled on 2006-01-06

> BO08433.3prime
ATGGTCTAGAAAGCTTGCGTAGGAAAGTGCCGAGGGCGAACGCGAGCCAA
CTGTGAAATCTTTGTACACCGAAAACACAGATATCTTGTCTTTTAATTGC
TGGCACAGTTTCTGGCCATTCATCAGCAGCAGTAGCACGTCGTTAAGCCA
CTGGACAGAGGCCTCCGCTTGGCGGGAATCGAAGCGCATTGTGCCCTGGT
TGTTCAGCAGCTGGTAGACGGCAATGATCAGCTTGTGGCTCTGCAGGTAG
AAGCTAACGGCCAAATCCTCGGGCAGATTGGGCACCAGCGACTTCATATT
GCGCCCTTTGATCAGCTCATCGATGGGCTTCTTTTTGGGCACCAGCAAAC
TGTTTCTGCCCCGCTGCAGGGCATCCAGAATGTTGCCTATCACATGCAGC
ACTTCGTCGGAGGTTTTGAAGTGATAAGAGTCGTCGACATCGTCTATGTG
GTTGATGGCGGTCTGCAGATGATTGGCCGCATCCTGGACCTGCTGCAACT
TCCAGGGAGAGTCATGTGTAATGGAGGTACGTTGCGTTTGGCTCGGTGCC
TTGCACAGCTTAAAGCTAATGTCAGCCTGGGTGATGGCATCGCCCGTTAG
GGTCAGCACGGCCTTCAGCTGATCGGGCGACACGGTGAGTATGAACTTCT
CAGTCTTCTTTCCCTCGTTCTCGTAAAGGGGCACCGGAAATCGATGAGCG
CACTCCACCAGAATGCTCCTTAATTGCTTCAGTATCGCGTGTACTTCTTG
GCGCAGCACCCACTCGAACTCGATTTGCANGTTGAGGGCTTCCTCACGCT
CCGTGTCCGCGAGCATTTTCATGTCGACTGATAACT

BO08433.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG7725-PB 1032 rogdi-RB 226..1029 822..19 4001 99.8 Minus
CG7725-PA 807 rogdi-RA 1..804 822..19 4001 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..937 822..19 4009 99.9 Minus
rogdi-RB 2335 CG7725-RB 441..1244 822..19 4009 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 415..85 1655 100 Minus
3L 28110227 3L 17052721..17052878 573..416 790 100 Minus
3L 28110227 3L 17052002..17052135 706..573 670 100 Minus
3L 28110227 3L 17051860..17051933 778..705 370 100 Minus
3L 28110227 3L 17054296..17054363 86..19 340 100 Minus
3L 28110227 3L 17051410..17051451 822..781 210 100 Minus
Blast to na_te.dros performed on 2015-02-11 18:04:04 has no hits.

BO08433.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:57 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:34 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7725-PA 1..807 16..822 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:19 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1244 19..829 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:47 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1244 19..829 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:47 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17052721..17052878 416..573 100 -> Minus
3L 17051404..17051454 778..829 92 -> Minus
3L 17051861..17051932 706..777 100 -> Minus
3L 17052003..17052134 574..705 100 -> Minus
3L 17054298..17054363 19..84 100   Minus
3L 17052955..17053285 85..415 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:19 Download gff for BO08433.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044504..17044554 778..829 92 -> Minus
arm_3L 17044961..17045032 706..777 100 -> Minus
arm_3L 17045103..17045234 574..705 100 -> Minus
arm_3L 17045821..17045978 416..573 100 -> Minus
arm_3L 17046055..17046385 85..415 100 -> Minus
arm_3L 17047398..17047463 19..84 100   Minus

BO08433.5prime Sequence

836 bp (830 high quality bases) assembled on 2006-01-06

> BO08433.5prime
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACGCAAGCTTTCTAGACC

BO08433.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG7725-PB 1032 rogdi-RB 226..1029 17..820 4020 100 Plus
CG7725-PA 807 rogdi-RA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..937 17..820 4020 100 Plus
rogdi-RB 2335 CG7725-RB 441..1244 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 424..754 1655 100 Plus
3L 28110227 3L 17052721..17052878 266..423 790 100 Plus
3L 28110227 3L 17052002..17052135 133..266 670 100 Plus
3L 28110227 3L 17051860..17051933 61..134 370 100 Plus
3L 28110227 3L 17054296..17054363 753..820 340 100 Plus
3L 28110227 3L 17051410..17051454 17..61 225 100 Plus
Blast to na_te.dros performed on 2015-02-11 18:02:33 has no hits.

BO08433.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:58 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:35 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7725-PA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:23:43 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1244 10..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:13 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 435..1244 10..820 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:13 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17051861..17051932 62..133 100 -> Plus
3L 17052003..17052134 134..265 100 -> Plus
3L 17052721..17052878 266..423 100 -> Plus
3L 17051404..17051454 10..61 94 -> Plus
3L 17052955..17053285 424..754 100 -> Plus
3L 17054298..17054363 755..820 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:23:43 Download gff for BO08433.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044961..17045032 62..133 100 -> Plus
arm_3L 17044504..17044554 10..61 94 -> Plus
arm_3L 17045103..17045234 134..265 100 -> Plus
arm_3L 17045821..17045978 266..423 100 -> Plus
arm_3L 17046055..17046385 424..754 100 -> Plus
arm_3L 17047398..17047463 755..820 100   Plus

BO08433.complete Sequence

838 bp (838 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631191

> BO08433.complete
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACGCAAGCTTTCTAGACCAT

BO08433.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 807 CG7725-PA 1..804 17..820 4020 100 Plus
rogdi-RB 1032 CG7725-PB 226..1029 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-RA 2028 CG7725-RA 134..937 17..820 4020 100 Plus
rogdi-RB 2335 CG7725-RB 441..1244 17..820 4020 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17052955..17053285 424..754 1655 100 Plus
3L 28110227 3L 17052721..17052878 266..423 790 100 Plus
3L 28110227 3L 17052002..17052135 133..266 670 100 Plus
3L 28110227 3L 17051860..17051933 61..134 370 100 Plus
3L 28110227 3L 17054296..17054363 753..820 340 100 Plus
3L 28110227 3L 17051410..17051454 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-26 14:52:01 has no hits.

BO08433.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:11 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 1..807 17..823 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:04 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 123..932 10..820 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:23 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 441..1244 17..822 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:11 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RA 123..932 10..820 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:45 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
rogdi-RB 441..1244 17..822 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:45 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17051410..17051454 17..61 100 -> Plus
3L 17051861..17051932 62..133 100 -> Plus
3L 17052003..17052134 134..265 100 -> Plus
3L 17052721..17052878 266..423 100 -> Plus
3L 17052955..17053285 424..754 100 -> Plus
3L 17054298..17054363 755..822 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:23 Download gff for BO08433.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17044510..17044554 17..61 100 -> Plus
arm_3L 17044961..17045032 62..133 100 -> Plus
arm_3L 17045103..17045234 134..265 100 -> Plus
arm_3L 17045821..17045978 266..423 100 -> Plus
arm_3L 17046055..17046385 424..754 100 -> Plus
arm_3L 17047398..17047463 755..822 97   Plus

BO08433.pep Sequence

Translation from 16 to 838

> BO08433.pep
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSYASFLDH

BO08433.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:35
Subject Length Description Subject Range Query Range Score Percent Strand
rogdi-PA 268 CG7725-PA 1..268 1..268 1365 100 Plus
rogdi-PB 343 CG7725-PB 76..343 1..268 1365 100 Plus