Clone Sequence Records
BO08433.3prime Sequence
836 bp (835 high quality bases) assembled on 2006-01-06
> BO08433.3prime
ATGGTCTAGAAAGCTTGCGTAGGAAAGTGCCGAGGGCGAACGCGAGCCAA
CTGTGAAATCTTTGTACACCGAAAACACAGATATCTTGTCTTTTAATTGC
TGGCACAGTTTCTGGCCATTCATCAGCAGCAGTAGCACGTCGTTAAGCCA
CTGGACAGAGGCCTCCGCTTGGCGGGAATCGAAGCGCATTGTGCCCTGGT
TGTTCAGCAGCTGGTAGACGGCAATGATCAGCTTGTGGCTCTGCAGGTAG
AAGCTAACGGCCAAATCCTCGGGCAGATTGGGCACCAGCGACTTCATATT
GCGCCCTTTGATCAGCTCATCGATGGGCTTCTTTTTGGGCACCAGCAAAC
TGTTTCTGCCCCGCTGCAGGGCATCCAGAATGTTGCCTATCACATGCAGC
ACTTCGTCGGAGGTTTTGAAGTGATAAGAGTCGTCGACATCGTCTATGTG
GTTGATGGCGGTCTGCAGATGATTGGCCGCATCCTGGACCTGCTGCAACT
TCCAGGGAGAGTCATGTGTAATGGAGGTACGTTGCGTTTGGCTCGGTGCC
TTGCACAGCTTAAAGCTAATGTCAGCCTGGGTGATGGCATCGCCCGTTAG
GGTCAGCACGGCCTTCAGCTGATCGGGCGACACGGTGAGTATGAACTTCT
CAGTCTTCTTTCCCTCGTTCTCGTAAAGGGGCACCGGAAATCGATGAGCG
CACTCCACCAGAATGCTCCTTAATTGCTTCAGTATCGCGTGTACTTCTTG
GCGCAGCACCCACTCGAACTCGATTTGCANGTTGAGGGCTTCCTCACGCT
CCGTGTCCGCGAGCATTTTCATGTCGACTGATAACT
BO08433.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7725-PB | 1032 | rogdi-RB | 226..1029 | 822..19 | 4001 | 99.8 | Minus |
CG7725-PA | 807 | rogdi-RA | 1..804 | 822..19 | 4001 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:04:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..937 | 822..19 | 4009 | 99.9 | Minus |
rogdi-RB | 2335 | CG7725-RB | 441..1244 | 822..19 | 4009 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:04:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 415..85 | 1655 | 100 | Minus |
3L | 28110227 | 3L | 17052721..17052878 | 573..416 | 790 | 100 | Minus |
3L | 28110227 | 3L | 17052002..17052135 | 706..573 | 670 | 100 | Minus |
3L | 28110227 | 3L | 17051860..17051933 | 778..705 | 370 | 100 | Minus |
3L | 28110227 | 3L | 17054296..17054363 | 86..19 | 340 | 100 | Minus |
3L | 28110227 | 3L | 17051410..17051451 | 822..781 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 18:04:04 has no hits.
BO08433.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:57 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-PA | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:34 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7725-PA | 1..807 | 16..822 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:33:19 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1244 | 19..829 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:47:47 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1244 | 19..829 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:47:47 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17052721..17052878 | 416..573 | 100 | -> | Minus |
3L | 17051404..17051454 | 778..829 | 92 | -> | Minus |
3L | 17051861..17051932 | 706..777 | 100 | -> | Minus |
3L | 17052003..17052134 | 574..705 | 100 | -> | Minus |
3L | 17054298..17054363 | 19..84 | 100 | | Minus |
3L | 17052955..17053285 | 85..415 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:33:19 Download gff for
BO08433.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044504..17044554 | 778..829 | 92 | -> | Minus |
arm_3L | 17044961..17045032 | 706..777 | 100 | -> | Minus |
arm_3L | 17045103..17045234 | 574..705 | 100 | -> | Minus |
arm_3L | 17045821..17045978 | 416..573 | 100 | -> | Minus |
arm_3L | 17046055..17046385 | 85..415 | 100 | -> | Minus |
arm_3L | 17047398..17047463 | 19..84 | 100 | | Minus |
BO08433.5prime Sequence
836 bp (830 high quality bases) assembled on 2006-01-06
> BO08433.5prime
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACGCAAGCTTTCTAGACC
BO08433.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7725-PB | 1032 | rogdi-RB | 226..1029 | 17..820 | 4020 | 100 | Plus |
CG7725-PA | 807 | rogdi-RA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..937 | 17..820 | 4020 | 100 | Plus |
rogdi-RB | 2335 | CG7725-RB | 441..1244 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 18:02:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 424..754 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 17052721..17052878 | 266..423 | 790 | 100 | Plus |
3L | 28110227 | 3L | 17052002..17052135 | 133..266 | 670 | 100 | Plus |
3L | 28110227 | 3L | 17051860..17051933 | 61..134 | 370 | 100 | Plus |
3L | 28110227 | 3L | 17054296..17054363 | 753..820 | 340 | 100 | Plus |
3L | 28110227 | 3L | 17051410..17051454 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 18:02:33 has no hits.
BO08433.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:58 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:35 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7725-PA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:23:43 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1244 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:41:13 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 435..1244 | 10..820 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:41:13 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17051861..17051932 | 62..133 | 100 | -> | Plus |
3L | 17052003..17052134 | 134..265 | 100 | -> | Plus |
3L | 17052721..17052878 | 266..423 | 100 | -> | Plus |
3L | 17051404..17051454 | 10..61 | 94 | -> | Plus |
3L | 17052955..17053285 | 424..754 | 100 | -> | Plus |
3L | 17054298..17054363 | 755..820 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:23:43 Download gff for
BO08433.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044961..17045032 | 62..133 | 100 | -> | Plus |
arm_3L | 17044504..17044554 | 10..61 | 94 | -> | Plus |
arm_3L | 17045103..17045234 | 134..265 | 100 | -> | Plus |
arm_3L | 17045821..17045978 | 266..423 | 100 | -> | Plus |
arm_3L | 17046055..17046385 | 424..754 | 100 | -> | Plus |
arm_3L | 17047398..17047463 | 755..820 | 100 | | Plus |
BO08433.complete Sequence
838 bp (838 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631191
> BO08433.complete
GAAGTTATCAGTCGACATGAAAATGCTCGCGGACACGGAGCGTGAGGAAG
CCCTCAACCTGCAAATCGAGTTCGAGTGGGTGCTGCGCCAAGAAGTACAC
GCGATACTGAAGCAATTAAGGAGCATTCTGGTGGAGTGCGCTCATCGATT
TCCGGTGCCCCTTTACGAGAACGAGGGAAAGAAGACTGAGAAGTTCATAC
TCACCGTGTCGCCCGATCAGCTGAAGGCCGTGCTGACCCTAACGGGCGAT
GCCATCACCCAGGCTGACATTAGCTTTAAGCTGTGCAAGGCACCGAGCCA
AACGCAACGTACCTCCATTACACATGACTCTCCCTGGAAGTTGCAGCAGG
TCCAGGATGCGGCCAATCATCTGCAGACCGCCATCAACCACATAGACGAT
GTCGACGACTCTTATCACTTCAAAACCTCCGACGAAGTGCTGCATGTGAT
AGGCAACATTCTGGATGCCCTGCAGCGGGGCAGAAACAGTTTGCTGGTGC
CCAAAAAGAAGCCCATCGATGAGCTGATCAAAGGGCGCAATATGAAGTCG
CTGGTGCCCAATCTGCCCGAGGATTTGGCCGTTAGCTTCTACCTGCAGAG
CCACAAGCTGATCATTGCCGTCTACCAGCTGCTGAACAACCAGGGCACAA
TGCGCTTCGATTCCCGCCAAGCGGAGGCCTCTGTCCAGTGGCTTAACGAC
GTGCTACTGCTGCTGATGAATGGCCAGAAACTGTGCCAGCAATTAAAAGA
CAAGATATCTGTGTTTTCGGTGTACAAAGATTTCACAGTTGGCTCGCGTT
CGCCCTCGGCACTTTCCTACGCAAGCTTTCTAGACCAT
BO08433.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:52:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 807 | CG7725-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
rogdi-RB | 1032 | CG7725-PB | 226..1029 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:52:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-RA | 2028 | CG7725-RA | 134..937 | 17..820 | 4020 | 100 | Plus |
rogdi-RB | 2335 | CG7725-RB | 441..1244 | 17..820 | 4020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:52:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17052955..17053285 | 424..754 | 1655 | 100 | Plus |
3L | 28110227 | 3L | 17052721..17052878 | 266..423 | 790 | 100 | Plus |
3L | 28110227 | 3L | 17052002..17052135 | 133..266 | 670 | 100 | Plus |
3L | 28110227 | 3L | 17051860..17051933 | 61..134 | 370 | 100 | Plus |
3L | 28110227 | 3L | 17054296..17054363 | 753..820 | 340 | 100 | Plus |
3L | 28110227 | 3L | 17051410..17051454 | 17..61 | 225 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:52:01 has no hits.
BO08433.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:11 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 1..807 | 17..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:04 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 123..932 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:23 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 441..1244 | 17..822 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:11 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RA | 123..932 | 10..820 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:45 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rogdi-RB | 441..1244 | 17..822 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:45 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17051410..17051454 | 17..61 | 100 | -> | Plus |
3L | 17051861..17051932 | 62..133 | 100 | -> | Plus |
3L | 17052003..17052134 | 134..265 | 100 | -> | Plus |
3L | 17052721..17052878 | 266..423 | 100 | -> | Plus |
3L | 17052955..17053285 | 424..754 | 100 | -> | Plus |
3L | 17054298..17054363 | 755..822 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:23 Download gff for
BO08433.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17044510..17044554 | 17..61 | 100 | -> | Plus |
arm_3L | 17044961..17045032 | 62..133 | 100 | -> | Plus |
arm_3L | 17045103..17045234 | 134..265 | 100 | -> | Plus |
arm_3L | 17045821..17045978 | 266..423 | 100 | -> | Plus |
arm_3L | 17046055..17046385 | 424..754 | 100 | -> | Plus |
arm_3L | 17047398..17047463 | 755..822 | 97 | | Plus |
BO08433.pep Sequence
Translation from 16 to 838
> BO08433.pep
MKMLADTEREEALNLQIEFEWVLRQEVHAILKQLRSILVECAHRFPVPLY
ENEGKKTEKFILTVSPDQLKAVLTLTGDAITQADISFKLCKAPSQTQRTS
ITHDSPWKLQQVQDAANHLQTAINHIDDVDDSYHFKTSDEVLHVIGNILD
ALQRGRNSLLVPKKKPIDELIKGRNMKSLVPNLPEDLAVSFYLQSHKLII
AVYQLLNNQGTMRFDSRQAEASVQWLNDVLLLLMNGQKLCQQLKDKISVF
SVYKDFTVGSRSPSALSYASFLDH
BO08433.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:44:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rogdi-PA | 268 | CG7725-PA | 1..268 | 1..268 | 1365 | 100 | Plus |
rogdi-PB | 343 | CG7725-PB | 76..343 | 1..268 | 1365 | 100 | Plus |