Clone Sequence Records
BO08434.3prime Sequence
881 bp (772 high quality bases) assembled on 2006-01-06
> BO08434.3prime
ATGGTCTAGAAAGCTTGCAAAACTCTGTAAGCATTTCATGATGGTGTCTC
GCAGCTTGAGCCGGGTTGTTGGCTTTCCGCCGCAGATAATATGCGTCTCG
TTGTCCTCGAACTTAATGACTGTGTCCTCATTGACAAGGTTCAGAGTCAG
AGCGCCGCCAGTGCGGTCTAGCTTGATGTTGGAGAAGCCATCCTGTGCCA
GCTTCTTCATCACTGCATCTACATCAATGCTGCCATACTCGTATTTGACG
TTCTTCAGCACATCCTCCTTTGTCGGAGCGCTGTTGCTCGAGATGGTCTC
GTCTTTAACGCTATCCGCACATGGCTGGATGCAGTGGACCTTGTCCTTAA
CTTGCAAAACTCCTGTCAATGTGGAGAAGGTCACGCCGGCCGCCACCTCC
TTTGGCGATATCTTTTGGGCCAGTTCCGAGGTAATGTAAATTCGATCCAG
CTTCCGTTTTAATGGCAGACGTATGATCTCGCCGCACTTGAACGTTATTA
TCTTCTTATCCGGCTGTTCAATGAACAAATTTGGGGCCGAGGGATGTGGT
TTTGTGTATGCCTCTGGGATGACAAGCACATTTGGTTTCAACTCCTTGAT
CAGCTTATTTGCCTGCTGATAATTCAAAGAGGTGTCGATGGGACAGTAAA
AAGCCTTCATGGCCAGTGGTTGGAAGGGCGCCAGTACTTGCAGATACGGA
AAGTCCGGCTCCGTGAATATGATGGAGTTGTTAGGGTTATTGCCCCACAT
CTCGATAAAGTGAACAGCGTCGCCGAAACGCAAGCTAGGATGGCCACAAA
AGACCACGCAGGGCTGCCGGAAGTCCTTGCTAAAGCCCTCGGAGAACACA
TGGTTATAGTGCTTCAGCTTGTTGTTGCGAA
BO08434.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5222-PA | 1965 | CG5222-RA | 1100..1962 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 1164..2026 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:05:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16103484..16104281 | 19..816 | 3990 | 100 | Plus |
| 3L | 28110227 | 3L | 16104336..16104403 | 814..881 | 340 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:05:55 has no hits.
BO08434.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:46:59 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1102..1965 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:36 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1102..1965 | 15..879 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 01:49:17 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 1164..2029 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:59:20 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 1164..2029 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:59:20 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16103480..16104278 | 15..813 | 99 | <- | Plus |
| 3L | 16104336..16104403 | 814..881 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 01:49:17 Download gff for
BO08434.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16096580..16097378 | 15..813 | 99 | <- | Plus |
| arm_3L | 16097436..16097503 | 814..881 | 100 | | Plus |
BO08434.5prime Sequence
929 bp (840 high quality bases) assembled on 2006-01-06
> BO08434.5prime
GAAGTTATCAGTCGACATGCGATTGTATTGTCTCAGCGGGGACCTGGCCA
AGCCATGTTATATCATTACCTTCAAGGGCCTGCGGATTATGCTGGACTGC
GGTCTCACGGAGCAGACAGTCCTGAATTTCCTTCCGCTGCCCTTCGTTCA
GTCACTGAAGTGGTCCAATCTGCCCAACTTCGTGCCCAGTCGGGATCATG
ATCCCCAAATGGATGGCGAGTTGAAGGACTGCTGTGGCCGGGTTTTCGTG
GACTCGACGCCCGAGTTTAATCTACCCATGGACAAAATGCTGGATTTCAG
CGAAGTGGATGTGATACTTATCTCGAATTATCTTAATATGCTGGCCTTGC
CGTATATCACGGAAAACACGGGGTTCAAGGGCAAAGTCTATGCCACGGAG
CCAACGCTGCAGATCGGCCGATTTTTCCTGGAGGAGCTGGTGGACTATAT
CGAAGTGTCGCCCAAGGCGTGCACCGCGCGCTTGTGGAAGGAGAAGCTTC
ATCTGCTGCCCAGTCCCTTGAGCGAAGCCTTTCGCGCCAAGAAGTGGCGC
ACTATCTTTAGTCTTAAGGATGTCCAAGGCAGTCTGTCCAAGGTGACCAT
CATGGGCTACGACGAGAAGCTGGACATCCTCGGAGCTTTTATCGCCACTC
CTGTCAGCTCGGGCTACTGCCTGGGCTCGAGCAACTGGGTACTGAGCACG
GCGCATGAAAAGATTTGCTATGTCAGTGGTTCCTCCACGTTGACCACACA
TCCGCGGCCCATCAATCAGTCGGCGCTGAAGCACGCCGATGTACTCATTA
TGACCGGACTGACGCANGCGCCGACGGTAAATCCGGACACGAAGCTGGGC
GAGCTCTGCATGAATGTGGCCTTGACGATCCGCAACAATGGGTCTGCCTT
GATTTCCTGTATCCTTCGGGCGTTGTCTA
BO08434.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5222-PA | 1965 | CG5222-RA | 1..894 | 17..910 | 4426 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 65..978 | 17..929 | 4519 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16104589..16105494 | 929..25 | 4454 | 99.7 | Minus |
Blast to na_te.dros performed 2015-02-12 12:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-A | 13424 | TART-A 13424bp | 10700..10873 | 253..85 | 128 | 57.6 | Minus |
BO08434.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:00 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:38 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-PA | 1..913 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:24 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..977 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:55:19 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..977 | 17..928 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:55:19 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16104590..16105500 | 20..928 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:24 Download gff for
BO08434.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16097690..16098600 | 20..928 | 99 | -> | Minus |
BO08434.complete Sequence
1996 bp (1996 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631192
> BO08434.complete
GAAGTTATCAGTCGACATGCGATTGTATTGTCTCAGCGGGGACCTGGCCA
AGCCATGTTATATCATTACCTTCAAGGGCCTGCGGATTATGCTGGACTGC
GGTCTCACGGAGCAGACAGTCCTGAATTTCCTTCCGCTGCCCTTCGTTCA
GTCACTGAAGTGGTCCAATCTGCCCAACTTCGTGCCCAGTCGGGATCATG
ATCCCCAAATGGATGGCGAGTTGAAGGACTGCTGTGGCCGGGTTTTCGTG
GACTCGACGCCCGAGTTTAATCTACCCATGGACAAAATGCTGGATTTCAG
CGAAGTGGATGTGATACTTATCTCGAATTATCTTAATATGCTGGCCTTGC
CGTATATCACGGAAAACACGGGGTTCAAGGGCAAAGTCTATGCCACGGAG
CCAACGCTGCAGATCGGCCGATTTTTCCTGGAGGAGCTGGTGGACTATAT
CGAAGTGTCGCCCAAGGCGTGCACCGCGCGCTTGTGGAAGGAGAAGCTTC
ATCTGCTGCCCAGTCCCTTGAGCGAAGCCTTTCGCGCCAAGAAGTGGCGC
ACTATCTTTAGTCTTAAGGATGTCCAAGGCAGTCTGTCCAAGGTGACCAT
CATGGGCTACGACGAGAAGCTGGACATCCTCGGAGCTTTTATCGCCACTC
CTGTCAGCTCGGGCTACTGCCTGGGCTCGAGCAACTGGGTACTGAGCACG
GCGCATGAAAAGATTTGCTATGTCAGTGGTTCCTCCACGTTGACCACACA
TCCGCGGCCCATCAATCAGTCGGCGCTGAAGCACGCCGATGTACTCATTA
TGACCGGACTGACGCAGGCGCCGACGGTAAATCCGGACACGAAGCTGGGC
GAGCTCTGCATGAATGTGGCCTTGACGATCCGCAACAATGGGTCTGCCTT
GATTCCCTGTTATCCTTCGGGCGTTGTCTATGACCTCTTTGAGTGCCTCA
CCCAGAATTTGGAAAACGCTGGCCTAAACAATGTTCCCATGTTCTTTATT
TCCCCTGTGGCAGACAGCTCCTTGGCGTATTCTAATATCCTGGCCGAGTG
GCTTAGTTCCGCCAAGCAGAACAAAGTGTATCTTCCAGACGATCCTTTCC
CACATGCCTTTTACCTTCGCAACAACAAGCTGAAGCACTATAACCATGTG
TTCTCCGAGGGCTTTAGCAAGGACTTCCGGCAGCCCTGCGTGGTCTTTTG
TGGCCATCCTAGCTTGCGTTTCGGCGACGCTGTTCACTTTATCGAGATGT
GGGGCAATAACCCTAACAACTCCATCATATTCACGGAGCCGGACTTTCCG
TATCTGCAAGTACTGGCGCCCTTCCAACCACTGGCCATGAAGGCTTTTTA
CTGTCCCATCGACACCTCTTTGAATTATCAGCAGGCAAATAAGCTGATCA
AGGAGTTGAAACCAAATGTGCTTGTCATCCCAGAGGCATACACAAAACCA
CATCCCTCGGCCCCAAATTTGTTCATTGAACAGCCGGATAAGAAGATAAT
AACGTTCAAGTGCGGCGAGATCATACGTCTGCCATTAAAACGGAAGCTGG
ATCGAATTTACATTACCTCGGAACTGGCCCAAAAGATATCGCCAAAGGAG
GTGGCGGCCGGCGTGACCTTCTCCACATTGACAGGAGTTTTGCAAGTTAA
GGACAAGGTCCACTGCATCCAGCCATGTGCGGATAGCGTTAAAGACGAGA
CCATCTCGAGCAACAGCGCTCCGACAAAGGAGGATGTGCTGAAGAACGTC
AAATACGAGTATGGCAGCATTGATGTAGATGCAGTGATGAAGAAGCTGGC
ACAGGATGGCTTCTCCAACATCAAGCTAGACCGCACTGGCGGCGCTCTGA
CTCTGAACCTTGTCAATGAGGACACAGTCATTAAGTTCGAGGACAACGAG
ACGCATATTATCTGCGGCGGAAAGCCAACAACCCGGCTCAAGCTGCGAGA
CACCATCATGAAATGCTTACAGAGTTTTGCAAGCTTTCTAGACCAT
BO08434.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:37:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 1965 | CG5222-PA | 1..1962 | 17..1978 | 9810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:37:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-RA | 2078 | CG5222-RA | 65..2026 | 17..1978 | 9810 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:37:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16104336..16105494 | 1183..25 | 5795 | 100 | Minus |
| 3L | 28110227 | 3L | 16103484..16104281 | 1978..1181 | 3990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:37:39 has no hits.
BO08434.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:13 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 1..1965 | 17..1982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:27 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 49..2013 | 17..1982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:24:34 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..2026 | 17..1980 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:13 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5222-RA | 49..2013 | 17..1982 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:54 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| IntS9-RA | 65..2026 | 17..1980 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:54 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16103482..16104278 | 1184..1980 | 99 | <- | Minus |
| 3L | 16104336..16105498 | 17..1183 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:24:34 Download gff for
BO08434.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16096582..16097378 | 1184..1980 | 99 | <- | Minus |
| arm_3L | 16097436..16098598 | 17..1183 | 99 | | Minus |
BO08434.pep Sequence
Translation from 16 to 1996
> BO08434.pep
MRLYCLSGDLAKPCYIITFKGLRIMLDCGLTEQTVLNFLPLPFVQSLKWS
NLPNFVPSRDHDPQMDGELKDCCGRVFVDSTPEFNLPMDKMLDFSEVDVI
LISNYLNMLALPYITENTGFKGKVYATEPTLQIGRFFLEELVDYIEVSPK
ACTARLWKEKLHLLPSPLSEAFRAKKWRTIFSLKDVQGSLSKVTIMGYDE
KLDILGAFIATPVSSGYCLGSSNWVLSTAHEKICYVSGSSTLTTHPRPIN
QSALKHADVLIMTGLTQAPTVNPDTKLGELCMNVALTIRNNGSALIPCYP
SGVVYDLFECLTQNLENAGLNNVPMFFISPVADSSLAYSNILAEWLSSAK
QNKVYLPDDPFPHAFYLRNNKLKHYNHVFSEGFSKDFRQPCVVFCGHPSL
RFGDAVHFIEMWGNNPNNSIIFTEPDFPYLQVLAPFQPLAMKAFYCPIDT
SLNYQQANKLIKELKPNVLVIPEAYTKPHPSAPNLFIEQPDKKIITFKCG
EIIRLPLKRKLDRIYITSELAQKISPKEVAAGVTFSTLTGVLQVKDKVHC
IQPCADSVKDETISSNSAPTKEDVLKNVKYEYGSIDVDAVMKKLAQDGFS
NIKLDRTGGALTLNLVNEDTVIKFEDNETHIICGGKPTTRLKLRDTIMKC
LQSFASFLDH
BO08434.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| IntS9-PA | 654 | CG5222-PA | 1..654 | 1..654 | 3453 | 100 | Plus |
| Cpsf73-PA | 684 | CG7698-PA | 28..422 | 9..471 | 205 | 20.7 | Plus |
| Cpsf100-PA | 756 | CG1957-PA | 5..362 | 1..428 | 202 | 22.5 | Plus |
