Clone Sequence Records
BO08436.3prime Sequence
912 bp (839 high quality bases) assembled on 2006-01-06
> BO08436.3prime
ATGGTCTAGAAAGCTTGCCTTCAGCCCCAGGTCCTTTTCAATTGTATGCG
AGCAGACGGCCATCATCTGATCCTTGACGTTGACGAAGTTGCGAATAGCA
GCGGGCTTGGCCTCTGGCCAACCAGCCAGATCGCGGTAGATGGGGCGACA
GAACTTCATGCGGAAGTTGGAGTTGGCAAATTCGAGGATCTCATCCAGAC
GTTTTATCAAGCGTGCACGGATAATCAAGCGATTCAATCGGAAGCGAACC
TCGGCGTTCTTCGAACTCTTCAGGTTGTATGTGGATTCCAGTAGATTAAT
CTTGCCTTCGTTCAAATCGACAATGTCCTTGCTCTCGATCAGTTTGCCCA
GGAAGTCAATGAGCTGGTGAATGGAAATGGTCGTCTTGATCTCCGCACTG
TCAGCCAATTCAGCCACGCTCTTAGAGCTCCAGAGACTGGCCAATTCCTT
GGTCACATTAGCGAGGGATTCATCGAAGTTCGGAATGACGGGTGGCATTC
CCTCGGATTTCAGCCACAAGTCCCAGTCGACAGCACTCAGCTTATCCTTC
TTGTCCGTGTCGATGAAGTAGTCATATAAAGCACTCTGGAAATCTTTCGT
CTCAATCGACTTGTAGGCGTATTTTTTCAGATAGTCTCTCAGGAAAGGCT
CAAAAACGGTTGGTCCGCCAAACAAGTCCTCCAAGTAGCGCAGGAACGTC
GAACCCTTAATGTAAGGCACTGAAGAGAAGGCATCGTCGGGTCCACAGTT
GGATAGATCCACCACCAGCTTAGTCAGCTCGGGTGTCTTGTTGAGCTGAG
TGCGGATGCACTCCTGCAGATCCGTGAGATTGCTGAGCATTTTAAAGTCC
AACTCCTTGGCGCCCTGCATTCTTCCCACGATCTTGGATTCCCGAACACA
GTGAAGCCCTCG
BO08436.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PD | 1842 | CG10602-RD | 966..1839 | 892..19 | 4370 | 100 | Minus |
| CG10602-PC | 1842 | CG10602-RC | 966..1839 | 892..19 | 4370 | 100 | Minus |
| CG10602-PB | 1842 | CG10602-RB | 966..1839 | 892..19 | 4370 | 100 | Minus |
| CG10602-PA | 2055 | CG10602-RA | 1179..2052 | 892..19 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-08 14:47:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 1246..2140 | 912..19 | 4450 | 99.9 | Minus |
| CG10602-RC | 2126 | CG10602-RC | 1102..1996 | 912..19 | 4450 | 99.9 | Minus |
| CG10602-RD | 2172 | CG10602-RD | 1148..2042 | 912..19 | 4450 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-08 14:47:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18855256..18856077 | 19..840 | 4110 | 100 | Plus |
| 2L | 23513712 | 2L | 18856143..18856215 | 841..912 | 315 | 98.6 | Plus |
Blast to na_te.dros performed on 2015-02-08 14:47:29 has no hits.
BO08436.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:03 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PB | 945..1842 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:42 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1158..2055 | 15..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 23:59:34 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RD | 1148..2049 | 12..912 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-08 15:39:23 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RD | 1148..2049 | 12..912 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-08 15:39:23 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18855249..18856077 | 12..840 | 99 | <- | Plus |
| 2L | 18856143..18856215 | 841..912 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 23:59:34 Download gff for
BO08436.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18855249..18856077 | 12..840 | 99 | <- | Plus |
| arm_2L | 18856143..18856215 | 841..912 | 98 | | Plus |
BO08436.5prime Sequence
913 bp (778 high quality bases) assembled on 2006-01-06
> BO08436.5prime
GAAGTTATCAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTAC
TCCCGATTTACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTG
GATCCCAGTTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGC
TCTCAACTGGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGC
TCCATCGCTTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGAT
GTCCGCGACATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGA
GCTCCCGATCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGA
AGCTAACGCTGGAGTTGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTT
CGCATCGATTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAA
TCCCACCCAGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCC
AGGCAATCCACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTT
AAGTTTACCTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCT
GATGAGCGCCCTTATCGATAAGAAGGAACCGGGAAAGACACTATTCAAGC
AGGAGGTGCCCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTG
GTTTCCCGCCCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAGGAAGCCAT
CGTGGATGCCTGC
BO08436.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PA | 2055 | CG10602-RA | 1..897 | 17..913 | 4485 | 100 | Plus |
| CG10602-PD | 1842 | CG10602-RD | 1..684 | 230..913 | 3420 | 100 | Plus |
| CG10602-PC | 1842 | CG10602-RC | 1..684 | 230..913 | 3420 | 100 | Plus |
| CG10602-PB | 1842 | CG10602-RB | 1..684 | 230..913 | 3420 | 100 | Plus |
| CG10603-PA | 537 | mRpL13-RA | 1..148 | 17..164 | 740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:42:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..985 | 17..913 | 4485 | 100 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..841 | 165..913 | 3745 | 100 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..887 | 165..913 | 3745 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:42:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18856476..18856850 | 913..539 | 1875 | 100 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 391..165 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 540..392 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 19:42:09 has no hits.
BO08436.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:04 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:43 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-PA | 1..897 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:31:02 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..985 | 17..913 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:42:15 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..985 | 17..913 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:42:15 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 100 | | Minus |
| 2L | 18856476..18856848 | 541..913 | 100 | <- | Minus |
| 2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:31:02 Download gff for
BO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18856476..18856848 | 541..913 | 100 | <- | Minus |
| arm_2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| arm_2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 100 | | Minus |
BO08436.complete Sequence
2086 bp (2086 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631193
> BO08436.complete
GAAGTTATCAGTCGACATGTCCATTGCGAAGCGTGTGCAGCAATGGGCAA
CGTTCGCGCGCACTTGGCACATTTACGATTGCACCTGGCAGAATCCATTC
GAGTCGGCAAAACTGGTTAAAACGCATTTATTGGGCCTCCAAAAGCCCAT
TTACCACCCAATGATCTCTACTCGCGGCTTGTGCACTTCACACAAACTAC
TCCCGATTTACCAAGTACAAAAACGCAACATGGGTCGCTTAGGAGTCGTG
GATCCCAGTTCTTACTCGCAGCCCGATTTGATCACCACTGAGCACAGTGC
TCTCAACTGGAAGATCGACTTTGCAGCAACCAAAATCCAAGGAAGCGTGC
TCCATCGCTTCAAGGTGTTGACTGCCAATCTGGACAAAATTCTCCTTGAT
GTCCGCGACATCAATGTAACCAATGCCACGCTGCTGGCCGGAGGCAGTGA
GCTCCCGATCAACTTCTTTATCAGCGATGCCGTCGATGATATTGGCCAGA
AGCTAACGCTGGAGTTGCCATCTGGAACGGCTAAGGGAAGCCTTAACGTT
CGCATCGATTACGAGACTTCAAGCAGCGCCAGTGGGTTGCAGTGGCTGAA
TCCCACCCAGACTTTGGGCAAGGAGCATCCTTATATGTTCTCCCAATGCC
AGGCAATCCACGCTCGCTCGGTGATTCCCTGCCAAGACACGCCAGCTGTT
AAGTTTACCTATGATGCCACAGTGGAGCATCCCAGCGAGCTCACGGCCCT
GATGAGCGCCCTTATCGATAAGAAGGAACCGGGAAAGACACTATTCAAGC
AGGAGGTGCCCATTCCCGCTTATCTGGTGGCCATTGCCATTGGCAAATTG
GTTTCCCGCCCGCTGGGGGAGAACTCCAGTGTCTGGGCTGAGGAAGCCAT
CGTGGATGCCTGCGCCGAGGAGTTTTCCGAAACAGCTACCATGCTAAAGA
CTGCCACTGAGTTGTGTGGTCCGTATGTCTGGAAGCAGTACGATCTTCTG
GTGATGCCCCCCTCATTCCCCTTTGGTGGCATGGAGAATCCATGCCTCAC
CTTCGTAACTCCCACTCTTTTGGCCGGTGATAAGTCTCTGGCCGACGTTG
TGGCTCACGAGATAGCCCACAGCTGGACTGGTAATCTTGTGACCAACAAG
AACTTCGAGCATTTCTGGTTGAACGAGGGCTTCACTGTGTTCGTGGAATC
CAAGATCGTGGGAAGAATGCAGGGCGCCAAGGAGTTGGACTTTAAAATGC
TCAGCAATCTCACGGATCTGCAGGAGTGCATCCGCACTCAGCTCAACAAG
ACACCCGAGCTGACTAAGCTGGTGGTGGATCTATCCAACTGTGGACCCGA
CGATGCCTTCTCTTCAGTGCCTTACATTAAGGGTTCGACGTTCCTGCGCT
ACTTGGAGGACTTGTTTGGCGGACCAACCGTTTTTGAGCCTTTCCTGAGA
GACTATCTGAAAAAATACGCCTACAAGTCGATTGAGACGAAAGATTTCCA
GAGTGCTTTATATGACTACTTCATCGACACGGACAAGAAGGATAAGCTGA
GTGCTGTCGACTGGGACTTGTGGCTGAAATCCGAGGGAATGCCACCCGTC
ATTCCGAACTTCGATGAATCCCTCGCTAATGTGACCAAGGAATTGGCCAG
TCTCTGGAGCTCTAAGAGCGTGGCTGAATTGGCTGACAGTGCGGAGATCA
AGACGACCATTTCCATTCACCAGCTCATTGACTTCCTGGGCAAACTGATC
GAGAGCAAGGACATTGTCGATTTGAACGAAGGCAAGATTAATCTACTGGA
ATCCACATACAACCTGAAGAGTTCGAAGAACGCCGAGGTTCGCTTCCGAT
TGAATCGCTTGATTATCCGTGCACGCTTGATAAAACGTCTGGATGAGATC
CTCGAATTTGCCAACTCCAACTTCCGCATGAAGTTCTGTCGCCCCATCTA
CCGCGATCTGGCTGGTTGGCCAGAGGCCAAGCCCGCTGCTATTCGCAACT
TCGTCAACGTCAAGGATCAGATGATGGCCGTCTGCTCGCATACAATTGAA
AAGGACCTGGGGCTGAAGGCAAGCTTTCTAGACCAT
BO08436.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:50:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 1842 | CG10602-PE | 1..1839 | 230..2068 | 9195 | 100 | Plus |
| CG10602-RC | 1842 | CG10602-PC | 1..1839 | 230..2068 | 9195 | 100 | Plus |
| CG10602-RD | 1842 | CG10602-PD | 1..1839 | 230..2068 | 9195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:50:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-RE | 2270 | CG10602-RE | 89..2140 | 17..2068 | 10260 | 100 | Plus |
| CG10602-RC | 2126 | CG10602-RC | 93..1996 | 165..2068 | 9520 | 100 | Plus |
| CG10602-RD | 2172 | CG10602-RD | 139..2042 | 165..2068 | 9520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:50:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18855256..18856077 | 2068..1247 | 4110 | 100 | Minus |
| 2L | 23513712 | 2L | 18856143..18856850 | 1246..539 | 3540 | 100 | Minus |
| 2L | 23513712 | 2L | 18857177..18857403 | 391..165 | 1135 | 100 | Minus |
| 2L | 23513712 | 2L | 18856916..18857064 | 540..392 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 18858952..18859077 | 164..39 | 630 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:50:28 has no hits.
BO08436.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:39 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 1..2055 | 17..2072 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:58 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..2111 | 17..2075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:40 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..2140 | 17..2070 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:39 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RA | 53..2111 | 17..2075 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:22 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10602-RE | 89..2140 | 17..2070 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:22 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18855254..18856077 | 1247..2070 | 99 | <- | Minus |
| 2L | 18856143..18856848 | 541..1246 | 100 | <- | Minus |
| 2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| 2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| 2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| 2L | 18859137..18859160 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:40 Download gff for
BO08436.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18855254..18856077 | 1247..2070 | 99 | <- | Minus |
| arm_2L | 18856143..18856848 | 541..1246 | 100 | <- | Minus |
| arm_2L | 18856916..18857064 | 392..540 | 100 | <- | Minus |
| arm_2L | 18857177..18857403 | 165..391 | 100 | <- | Minus |
| arm_2L | 18858952..18859075 | 41..164 | 100 | <- | Minus |
| arm_2L | 18859137..18859160 | 17..40 | 100 | | Minus |
BO08436.pep Sequence
Translation from 16 to 2086
> BO08436.pep
MSIAKRVQQWATFARTWHIYDCTWQNPFESAKLVKTHLLGLQKPIYHPMI
STRGLCTSHKLLPIYQVQKRNMGRLGVVDPSSYSQPDLITTEHSALNWKI
DFAATKIQGSVLHRFKVLTANLDKILLDVRDINVTNATLLAGGSELPINF
FISDAVDDIGQKLTLELPSGTAKGSLNVRIDYETSSSASGLQWLNPTQTL
GKEHPYMFSQCQAIHARSVIPCQDTPAVKFTYDATVEHPSELTALMSALI
DKKEPGKTLFKQEVPIPAYLVAIAIGKLVSRPLGENSSVWAEEAIVDACA
EEFSETATMLKTATELCGPYVWKQYDLLVMPPSFPFGGMENPCLTFVTPT
LLAGDKSLADVVAHEIAHSWTGNLVTNKNFEHFWLNEGFTVFVESKIVGR
MQGAKELDFKMLSNLTDLQECIRTQLNKTPELTKLVVDLSNCGPDDAFSS
VPYIKGSTFLRYLEDLFGGPTVFEPFLRDYLKKYAYKSIETKDFQSALYD
YFIDTDKKDKLSAVDWDLWLKSEGMPPVIPNFDESLANVTKELASLWSSK
SVAELADSAEIKTTISIHQLIDFLGKLIESKDIVDLNEGKINLLESTYNL
KSSKNAEVRFRLNRLIIRARLIKRLDEILEFANSNFRMKFCRPIYRDLAG
WPEAKPAAIRNFVNVKDQMMAVCSHTIEKDLGLKASFLDH
BO08436.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10602-PE | 613 | CG10602-PE | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG10602-PC | 613 | CG10602-PC | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG10602-PD | 613 | CG10602-PD | 1..613 | 72..684 | 3171 | 100 | Plus |
| CG11951-PB | 493 | CG11951-PB | 57..465 | 106..498 | 300 | 26.3 | Plus |
| mRpL13-PA | 178 | CG10603-PA | 1..49 | 1..49 | 276 | 100 | Plus |
