Clone Sequence Records
BO08440.3prime Sequence
919 bp (851 high quality bases) assembled on 2006-01-06
> BO08440.3prime
ATGGTCTAGAAAGCTTGCCTTATGGCCATTGGTAGGATCAACGCCTCCGC
AGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGAT
ATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTGT
TGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCGG
ATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAAT
CGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCAG
AGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGAT
GACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCCC
ACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAAC
CTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATACA
ACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCCC
AAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGAT
GACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCCT
TGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACCC
AAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATGC
ACGAATCTTGCCCTCCATTCCACGGGAACCGAATCCACCGGGGACTAGGA
TGCCATGGCTATCGCATAGCTTCTGCCACTCCTTGTGGTACTTGCTCGGC
TCAGAATGCAAAGTTTCCTCCTCAGCAGGCACGACTCGATAAAGACCAGT
TCCAGTTTGCGATTCACTG
BO08440.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PC | 1884 | CG6854-RC | 1027..1881 | 873..19 | 4275 | 100 | Minus |
CG6854-PB | 1872 | CG6854-RB | 1015..1869 | 873..19 | 4275 | 100 | Minus |
CG6854-PC | 1884 | CG6854-RC | 980..1026 | 919..873 | 235 | 100 | Minus |
CG6854-PB | 1872 | CG6854-RB | 968..1014 | 919..873 | 235 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RC | 2627 | CG45070-RC | 1417..2318 | 919..19 | 4485 | 99.9 | Minus |
CTPsyn-RB | 2423 | CG45070-RB | 1213..2114 | 919..19 | 4485 | 99.9 | Minus |
CTPsyn-RA | 2406 | CG45070-RA | 1196..2097 | 919..19 | 4485 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111793..15112694 | 919..19 | 4460 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:50:50 has no hits.
BO08440.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:11 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PC | 980..1884 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:53 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 968..1872 | 15..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:21 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RC | 1196..2103 | 12..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:52 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RA | 1196..2103 | 12..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15111793..15112700 | 12..919 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:21 Download gff for
BO08440.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15104893..15105800 | 12..919 | 99 | | Minus |
BO08440.5prime Sequence
884 bp (780 high quality bases) assembled on 2006-01-06
> BO08440.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACAAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGA
BO08440.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6854-PB | 1872 | CG6854-RB | 1..868 | 17..884 | 4315 | 99.8 | Plus |
CG6854-PC | 1884 | CG6854-RC | 167..880 | 171..884 | 3545 | 99.8 | Plus |
CG6854-PA | 1290 | CG6854-RA | 1..154 | 17..170 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:12:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 2423 | CG45070-RB | 246..1113 | 17..884 | 4325 | 99.9 | Plus |
CTPsyn-RC | 2627 | CG45070-RC | 604..1317 | 171..884 | 3555 | 99.9 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 383..1096 | 171..884 | 3555 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:12:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111085..15111585 | 340..840 | 2505 | 100 | Plus |
3L | 28110227 | 3L | 15110816..15110986 | 171..341 | 855 | 100 | Plus |
3L | 28110227 | 3L | 15108805..15108959 | 17..171 | 775 | 100 | Plus |
3L | 28110227 | 3L | 15111653..15111693 | 844..884 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:12:16 has no hits.
BO08440.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:12 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:55 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-PB | 1..867 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:55 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 377..1243 | 17..883 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:48 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 246..1112 | 17..883 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:48 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15110816..15110986 | 171..341 | 100 | -> | Plus |
3L | 15111087..15111588 | 342..843 | 99 | -> | Plus |
3L | 15111653..15111692 | 844..883 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:55 Download gff for
BO08440.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 171..341 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 342..843 | 99 | -> | Plus |
arm_3L | 15104753..15104792 | 844..883 | 100 | | Plus |
BO08440.complete Sequence
1903 bp (1903 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631195
> BO08440.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTGAATCGCAAACTG
GAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGAAACTTTGCATTC
TGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTATGCGATAGCCATG
GCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATGGAGGGCAAGATT
CGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATTGCTTGGCATCTG
CTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAAATAAACTTGGTC
TCAAGGATGCAAACACCACAGAAATCGATCCGAACACAGCTAATGCCTTG
GTCATCGATATGCCAGAGCATCACACGGGTCAATTGGGCGGCACTATGCG
CTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTAGTGTCATTCGCC
AGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCATCGGCATCGTTAC
GAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCAAGGCATGCGATT
TGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCATTGAGCTCAGCG
GTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACTTGTCGCGG
CCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCTGGCCTCAGTGGA
TCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGTCGCCCCGCCAGC
TATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTGGGCTTGGCCGGA
GCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTACACCCACAAATGG
AATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCGACAGCGAAGGTG
CCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGGCAAGCTTTCTAGAC
CAT
BO08440.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 1872 | CG45070-PB | 1..1869 | 17..1885 | 9345 | 100 | Plus |
CTPsyn-RC | 1884 | CG45070-PC | 167..1881 | 171..1885 | 8575 | 100 | Plus |
CTPsyn-RA | 1884 | CG45070-PA | 167..1881 | 171..1885 | 8575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-RB | 2423 | CG45070-RB | 246..2114 | 17..1885 | 9345 | 100 | Plus |
CTPsyn-RC | 2627 | CG45070-RC | 604..2318 | 171..1885 | 8575 | 100 | Plus |
CTPsyn-RA | 2406 | CG45070-RA | 383..2097 | 171..1885 | 8575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 15111653..15112694 | 844..1885 | 5210 | 100 | Plus |
3L | 28110227 | 3L | 15111085..15111588 | 340..843 | 2520 | 100 | Plus |
3L | 28110227 | 3L | 15110816..15110986 | 171..341 | 855 | 100 | Plus |
3L | 28110227 | 3L | 15108805..15108959 | 17..171 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 12:51:50 has no hits.
BO08440.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:41 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 1..1872 | 17..1889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:59 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 244..2118 | 17..1892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:05 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 377..2245 | 17..1887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:41 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6854-RB | 244..2118 | 17..1892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:17 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CTPsyn-RB | 246..2114 | 17..1887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:17 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 15108805..15108958 | 17..170 | 100 | -> | Plus |
3L | 15110816..15110986 | 171..341 | 100 | -> | Plus |
3L | 15111087..15111588 | 342..843 | 100 | -> | Plus |
3L | 15111653..15112694 | 844..1887 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:05 Download gff for
BO08440.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 15101905..15102058 | 17..170 | 100 | -> | Plus |
arm_3L | 15103916..15104086 | 171..341 | 100 | -> | Plus |
arm_3L | 15104187..15104688 | 342..843 | 100 | -> | Plus |
arm_3L | 15104753..15105794 | 844..1887 | 99 | | Plus |
BO08440.pep Sequence
Translation from 16 to 1903
> BO08440.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHKASFLDH
BO08440.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CTPsyn-PB | 623 | CG45070-PB | 1..623 | 1..623 | 3275 | 100 | Plus |
CTPsyn-PC | 627 | CG45070-PC | 57..627 | 53..623 | 2991 | 100 | Plus |
CTPsyn-PA | 627 | CG45070-PA | 57..627 | 53..623 | 2991 | 100 | Plus |
CG45071-PB | 379 | CG45071-PB | 1..53 | 1..53 | 283 | 96.2 | Plus |
CG45071-PA | 429 | CG45071-PA | 1..54 | 1..54 | 281 | 96.3 | Plus |