Clone BO08440 Report

Search the DGRC for BO08440

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG6854-RB
Protein status:BO08440.pep: validated full length
Sequenced Size:1903

Clone Sequence Records

BO08440.3prime Sequence

919 bp (851 high quality bases) assembled on 2006-01-06

> BO08440.3prime
ATGGTCTAGAAAGCTTGCCTTATGGCCATTGGTAGGATCAACGCCTCCGC
AGGCACCTTCGCTGTCGGAAGTGCTTATGCTACCATTGCAACTTTTTGAT
ATTCCATTTGTGGGTGTAATGGGAATTTTCAAGGAGCTCAGCGATTTTGT
TGCTCCGGCCAAGCCCACAACACTGTCCTCCTCATCCGAGGATGCGTCGG
ATAGCTGGCGGGGCGACAGGCGGCAACCGCGCTGAATATATTGGTTCAAT
CGATCCACTGAGGCCAGGATCAGGCCGAGGAAAGGAGGCGACGGCTTCAG
AGGCCGCGACAAGTACTCTGGATGATATTGGGTGGCAACAAAGTAGGGAT
GACCGCTGAGCTCAATGATTTCCATCCTAGTTTTGTCGACGTCGGTGCCC
ACAAATCGCATGCCTTGCTCTTCCAGCAGATGCACGTATTTGGGATTAAC
CTCGTAACGATGCCGATGACGCTCCTGCACGCTTTTCGGATTGCCATACA
ACTGGCGAATGACACTAGGACCATCAGAGAAAACAGTTATTCGCTTGCCC
AAGCGCATAGTGCCGCCCAATTGACCCGTGTGATGCTCTGGCATATCGAT
GACCAAGGCATTAGCTGTGTTCGGATCGATTTCTGTGGTGTTTGCATCCT
TGAGACCAAGTTTATTTCGTGCGAATTCAATGACCGCCGCTTGCAGACCC
AAGCAGATGCCAAGCAATGGCTTTTGATTCTCTCGCGCCCATTGGCATGC
ACGAATCTTGCCCTCCATTCCACGGGAACCGAATCCACCGGGGACTAGGA
TGCCATGGCTATCGCATAGCTTCTGCCACTCCTTGTGGTACTTGCTCGGC
TCAGAATGCAAAGTTTCCTCCTCAGCAGGCACGACTCGATAAAGACCAGT
TCCAGTTTGCGATTCACTG

BO08440.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PC 1884 CG6854-RC 1027..1881 873..19 4275 100 Minus
CG6854-PB 1872 CG6854-RB 1015..1869 873..19 4275 100 Minus
CG6854-PC 1884 CG6854-RC 980..1026 919..873 235 100 Minus
CG6854-PB 1872 CG6854-RB 968..1014 919..873 235 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RC 2627 CG45070-RC 1417..2318 919..19 4485 99.9 Minus
CTPsyn-RB 2423 CG45070-RB 1213..2114 919..19 4485 99.9 Minus
CTPsyn-RA 2406 CG45070-RA 1196..2097 919..19 4485 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111793..15112694 919..19 4460 99.9 Minus
Blast to na_te.dros performed on 2015-02-10 18:50:50 has no hits.

BO08440.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:11 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PC 980..1884 15..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:53 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 968..1872 15..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:04:21 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RC 1196..2103 12..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:06:52 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RA 1196..2103 12..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:06:52 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15111793..15112700 12..919 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:04:21 Download gff for BO08440.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15104893..15105800 12..919 99   Minus

BO08440.5prime Sequence

884 bp (780 high quality bases) assembled on 2006-01-06

> BO08440.5prime
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACAAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGA

BO08440.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6854-PB 1872 CG6854-RB 1..868 17..884 4315 99.8 Plus
CG6854-PC 1884 CG6854-RC 167..880 171..884 3545 99.8 Plus
CG6854-PA 1290 CG6854-RA 1..154 17..170 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:12:18
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 2423 CG45070-RB 246..1113 17..884 4325 99.9 Plus
CTPsyn-RC 2627 CG45070-RC 604..1317 171..884 3555 99.9 Plus
CTPsyn-RA 2406 CG45070-RA 383..1096 171..884 3555 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:12:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111085..15111585 340..840 2505 100 Plus
3L 28110227 3L 15110816..15110986 171..341 855 100 Plus
3L 28110227 3L 15108805..15108959 17..171 775 100 Plus
3L 28110227 3L 15111653..15111693 844..884 205 100 Plus
Blast to na_te.dros performed on 2015-02-10 20:12:16 has no hits.

BO08440.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:12 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 1..867 17..883 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:55 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6854-PB 1..867 17..883 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:29:55 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 377..1243 17..883 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:53:48 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 246..1112 17..883 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:53:48 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15108805..15108958 17..170 100 -> Plus
3L 15110816..15110986 171..341 100 -> Plus
3L 15111087..15111588 342..843 99 -> Plus
3L 15111653..15111692 844..883 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:29:55 Download gff for BO08440.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15101905..15102058 17..170 100 -> Plus
arm_3L 15103916..15104086 171..341 100 -> Plus
arm_3L 15104187..15104688 342..843 99 -> Plus
arm_3L 15104753..15104792 844..883 100   Plus

BO08440.complete Sequence

1903 bp (1903 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ631195

> BO08440.complete
GAAGTTATCAGTCGACATGGCGCCAAAAAAGTCCACCATTGTGCTCAATG
TGGAGCAGTTTATTCACGACATCGAGGAGCGCCCGGCCATCTGGAACCGC
AATTTCCACTGCAACAAGGCCTTCCTCGAGCAGATGTGGGACGAGCTGAG
CGGAGCGCACAAACTGCCAAGCGAGGTTTACGTTTTGGACGATGGCGCCG
AGGTGGATCTGGATCTGGGAAACTATGAACGGTTTTTGGATGTTACCCTG
CATCGGGACAACAACATAACCACCGGAAAAATTTACAAGTTGGTCATTGA
GAAGGAGCGCACTGGCGAGTACTTGGGCAAAACGGTTCAAGTTGTCCCAC
ACATCACTGATGCCATTCAGGAATGGGTGGAGCGCGTGGCCCAGACACCC
GTTCAGGGATCTTCAAAGCCACAGGTGTGCATCGTGGAATTGGGAGGAAC
GATTGGTGACATCGAAGGCATGCCTTTCGTAGAGGCCTTCCGTCAGTTTC
AGTTCCGCGTAAAGAGAGAGAACTTCTGTTTGGCCCATGTGTCGCTGGTT
CCGTTGCCAAAGGCTACCGGAGAACCCAAGACCAAGCCCACACAAAGTTC
GGTCAGAGAACTGAGAGGATGTGGCCTGAGTCCCGATTTGATTGTCTGCC
GATCGGAGAAACCCATTGGACTGGAGGTCAAGGAGAAGATCAGCAACTTT
TGTCATGTGGGGCCGGATCAGGTGATATGCATCCACGATTTGAACTCCAT
TTATCATGTTCCGCTGCTGATGGAGCAGAATGGTGTTATTGAATACCTAA
ATGAGCGCCTACAGCTTAATATCGACATGAGCAAGAGGACCAAATGCTTG
CAGCAATGGCGAGATTTGGCGCGTCGAACGGAGACCGTTCGCCGTGAAGT
TTGCATCGCCGTCGTGGGAAAGTACACCAAGTTCACGGATTCGTACGCCT
CCGTAGTTAAAGCCCTGCAACATGCCGCCCTGGCAGTGAATCGCAAACTG
GAACTGGTCTTTATCGAGTCGTGCCTGCTGGAGGAGGAAACTTTGCATTC
TGAGCCGAGCAAGTACCACAAGGAGTGGCAGAAGCTATGCGATAGCCATG
GCATCCTAGTCCCCGGTGGATTCGGTTCCCGTGGAATGGAGGGCAAGATT
CGTGCATGCCAATGGGCGCGAGAGAATCAAAAGCCATTGCTTGGCATCTG
CTTGGGTCTGCAAGCGGCGGTCATTGAATTCGCACGAAATAAACTTGGTC
TCAAGGATGCAAACACCACAGAAATCGATCCGAACACAGCTAATGCCTTG
GTCATCGATATGCCAGAGCATCACACGGGTCAATTGGGCGGCACTATGCG
CTTGGGCAAGCGAATAACTGTTTTCTCTGATGGTCCTAGTGTCATTCGCC
AGTTGTATGGCAATCCGAAAAGCGTGCAGGAGCGTCATCGGCATCGTTAC
GAGGTTAATCCCAAATACGTGCATCTGCTGGAAGAGCAAGGCATGCGATT
TGTGGGCACCGACGTCGACAAAACTAGGATGGAAATCATTGAGCTCAGCG
GTCATCCCTACTTTGTTGCCACCCAATATCATCCAGAGTACTTGTCGCGG
CCTCTGAAGCCGTCGCCTCCTTTCCTCGGCCTGATCCTGGCCTCAGTGGA
TCGATTGAACCAATATATTCAGCGCGGTTGCCGCCTGTCGCCCCGCCAGC
TATCCGACGCATCCTCGGATGAGGAGGACAGTGTTGTGGGCTTGGCCGGA
GCAACAAAATCGCTGAGCTCCTTGAAAATTCCCATTACACCCACAAATGG
AATATCAAAAAGTTGCAATGGTAGCATAAGCACTTCCGACAGCGAAGGTG
CCTGCGGAGGCGTTGATCCTACCAATGGCCATAAGGCAAGCTTTCTAGAC
CAT

BO08440.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:51:51
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 1872 CG45070-PB 1..1869 17..1885 9345 100 Plus
CTPsyn-RC 1884 CG45070-PC 167..1881 171..1885 8575 100 Plus
CTPsyn-RA 1884 CG45070-PA 167..1881 171..1885 8575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:51:52
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-RB 2423 CG45070-RB 246..2114 17..1885 9345 100 Plus
CTPsyn-RC 2627 CG45070-RC 604..2318 171..1885 8575 100 Plus
CTPsyn-RA 2406 CG45070-RA 383..2097 171..1885 8575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:51:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15111653..15112694 844..1885 5210 100 Plus
3L 28110227 3L 15111085..15111588 340..843 2520 100 Plus
3L 28110227 3L 15110816..15110986 171..341 855 100 Plus
3L 28110227 3L 15108805..15108959 17..171 775 100 Plus
Blast to na_te.dros performed on 2014-11-27 12:51:50 has no hits.

BO08440.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:41 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 1..1872 17..1889 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:59 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 244..2118 17..1892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:25:05 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 377..2245 17..1887 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:41 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
CG6854-RB 244..2118 17..1892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:06:17 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
CTPsyn-RB 246..2114 17..1887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:17 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
3L 15108805..15108958 17..170 100 -> Plus
3L 15110816..15110986 171..341 100 -> Plus
3L 15111087..15111588 342..843 100 -> Plus
3L 15111653..15112694 844..1887 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:25:05 Download gff for BO08440.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15101905..15102058 17..170 100 -> Plus
arm_3L 15103916..15104086 171..341 100 -> Plus
arm_3L 15104187..15104688 342..843 100 -> Plus
arm_3L 15104753..15105794 844..1887 99   Plus

BO08440.pep Sequence

Translation from 16 to 1903

> BO08440.pep
MAPKKSTIVLNVEQFIHDIEERPAIWNRNFHCNKAFLEQMWDELSGAHKL
PSEVYVLDDGAEVDLDLGNYERFLDVTLHRDNNITTGKIYKLVIEKERTG
EYLGKTVQVVPHITDAIQEWVERVAQTPVQGSSKPQVCIVELGGTIGDIE
GMPFVEAFRQFQFRVKRENFCLAHVSLVPLPKATGEPKTKPTQSSVRELR
GCGLSPDLIVCRSEKPIGLEVKEKISNFCHVGPDQVICIHDLNSIYHVPL
LMEQNGVIEYLNERLQLNIDMSKRTKCLQQWRDLARRTETVRREVCIAVV
GKYTKFTDSYASVVKALQHAALAVNRKLELVFIESCLLEEETLHSEPSKY
HKEWQKLCDSHGILVPGGFGSRGMEGKIRACQWARENQKPLLGICLGLQA
AVIEFARNKLGLKDANTTEIDPNTANALVIDMPEHHTGQLGGTMRLGKRI
TVFSDGPSVIRQLYGNPKSVQERHRHRYEVNPKYVHLLEEQGMRFVGTDV
DKTRMEIIELSGHPYFVATQYHPEYLSRPLKPSPPFLGLILASVDRLNQY
IQRGCRLSPRQLSDASSDEEDSVVGLAGATKSLSSLKIPITPTNGISKSC
NGSISTSDSEGACGGVDPTNGHKASFLDH

BO08440.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CTPsyn-PB 623 CG45070-PB 1..623 1..623 3275 100 Plus
CTPsyn-PC 627 CG45070-PC 57..627 53..623 2991 100 Plus
CTPsyn-PA 627 CG45070-PA 57..627 53..623 2991 100 Plus
CG45071-PB 379 CG45071-PB 1..53 1..53 283 96.2 Plus
CG45071-PA 429 CG45071-PA 1..54 1..54 281 96.3 Plus