Clone Sequence Records
BO08442.3prime Sequence
892 bp (835 high quality bases) assembled on 2006-01-06
> BO08442.3prime
ATGGTCTAGAAAGCTTGCCTTGTTAGCATACCCGTTTGGGTTCTGGCTCT
GCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTTC
CAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCAC
ATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAGG
CCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGTG
CCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGTC
CAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCGC
GCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAGG
CTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGTT
GGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCCA
CCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTTG
CACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGGG
CGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTTG
GCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATTG
TTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGTG
GTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCGG
CAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCACC
TGCTCCCTGTCCGTGATGTCCACTCTATAGAAGTTGACCTTC
BO08442.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 177..1050 | 892..19 | 4345 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 456..1329 | 892..19 | 4355 | 99.9 | Minus |
Gale-RA | 1757 | CG12030-RA | 675..1548 | 892..19 | 4355 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651102 | 539..19 | 2590 | 99.8 | Minus |
3L | 28110227 | 3L | 650231..650523 | 830..538 | 1465 | 100 | Minus |
3L | 28110227 | 3L | 649356..649419 | 892..829 | 320 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 00:11:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 662..700 | 123 | 79.5 | Plus |
BO08442.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:15 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 177..1053 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:59 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 177..1053 | 18..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:41:30 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 675..1560 | 7..892 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:48 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 675..1560 | 7..892 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:48 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649356..649419 | 829..892 | 100 | -> | Minus |
3L | 650233..650523 | 538..828 | 100 | -> | Minus |
3L | 650584..651114 | 7..537 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:41:30 Download gff for
BO08442.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649356..649419 | 829..892 | 100 | -> | Minus |
arm_3L | 650233..650523 | 538..828 | 100 | -> | Minus |
arm_3L | 650584..651114 | 7..537 | 98 | | Minus |
BO08442.5prime Sequence
887 bp (805 high quality bases) assembled on 2006-01-06
> BO08442.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTTCGCCTACATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAANGCTC
BO08442.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12030-PA | 1053 | CG12030-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
CG12030-PA | 1053 | CG12030-RA | 812..866 | 828..882 | 275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1145 | 17..882 | 4285 | 99.8 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1364 | 17..882 | 4285 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..650918 | 546..882 | 1590 | 99.4 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 12:04:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BO08442.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:15 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:00 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-PA | 1..870 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:22 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1368 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:59 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 495..1368 | 9..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:59 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650584..650922 | 548..887 | 98 | | Plus |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:22 Download gff for
BO08442.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..650922 | 548..887 | 98 | | Plus |
BO08442.complete Sequence
1084 bp assembled on 2011-06-28
GenBank Submission: KX799289
> BO08442.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCTAACAAGGCAAGCTTTCTAGACCAT
BO08442.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1053 | CG12030-PB | 1..1050 | 17..1066 | 5235 | 99.9 | Plus |
Gale-RA | 1053 | CG12030-PA | 1..1050 | 17..1066 | 5235 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-RB | 1538 | CG12030-RB | 280..1329 | 17..1066 | 5235 | 99.9 | Plus |
Gale-RA | 1757 | CG12030-RA | 499..1548 | 17..1066 | 5235 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 650582..651102 | 546..1066 | 2590 | 99.8 | Plus |
3L | 28110227 | 3L | 650231..650523 | 255..547 | 1465 | 100 | Plus |
3L | 28110227 | 3L | 649180..649419 | 17..256 | 1200 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:17:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dyak\HeT-A | 5691 | Dyak\HeT-A YAKHETA 5691bp | 5077..5115 | 423..385 | 123 | 79.5 | Minus |
BO08442.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:29 Download gff for
BO08442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12030-RA | 537..1586 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:07 Download gff for
BO08442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1548 | 17..1068 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:45 Download gff for
BO08442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gale-RA | 499..1548 | 17..1068 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:45 Download gff for
BO08442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 650233..650523 | 257..547 | 100 | -> | Plus |
3L | 649180..649419 | 17..256 | 100 | -> | Plus |
3L | 650584..651102 | 548..1068 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:07 Download gff for
BO08442.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 649180..649419 | 17..256 | 100 | -> | Plus |
arm_3L | 650233..650523 | 257..547 | 100 | -> | Plus |
arm_3L | 650584..651102 | 548..1068 | 99 | | Plus |
BO08442.pep Sequence
Translation from 16 to 1084
> BO08442.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
ASFLDH
BO08442.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gale-PB | 350 | CG12030-PB | 1..350 | 1..350 | 1861 | 100 | Plus |
Gale-PA | 350 | CG12030-PA | 1..350 | 1..350 | 1861 | 100 | Plus |