Clone BO08442 Report

Search the DGRC for BO08442

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG12030-RA
Protein status:BO08442.pep: Imported from assembly
Sequenced Size:1084

Clone Sequence Records

BO08442.3prime Sequence

892 bp (835 high quality bases) assembled on 2006-01-06

> BO08442.3prime
ATGGTCTAGAAAGCTTGCCTTGTTAGCATACCCGTTTGGGTTCTGGCTCT
GCCAGCGCCACGTGTCCTCGCACATCTTGTCGATGCCACGCTCGGCCTTC
CAGCCCAGCTTCTTATCCGCCAACGTGGCGTCCGCATAGCAAGTGGCCAC
ATCTCCGGACCGTCGGTCCACCAGAGTGTAGTTGACCTTCTTGCCGGAGG
CCTTCTCAAACGCCTTCACCATGTCCAGCACCGAGTAGCCCACGCCGGTG
CCCAAATTGTAGGCGAAAAAGCCCGTCTCCGCGATGTTGCGCAGCTTGTC
CAACGCCTTTACGTGTCCCTCGGCCAGGTCCACGATGTGGATGTAATCGC
GCACGCCGGTGCCGTCGTGCGTGGGAAAGTCGCTGCCGTAGACACTCAGG
CTGGGACGTCGACCCACGGCCACCTGTGCGATGTAGGGCATCAGGTTGTT
GGGCTCGCCGTTCGGATCCTCGCCAATCCGACCACTGATGTGGGCACCCA
CCGGGTTGAAGTACCGCAGCGAAACCACTGCCCAACGCTTGTCAGACTTG
CACAGATCCTTGAGAATCTCCTCGGTGAAATATTTAGTCTTGCCGTAGGG
CGATGTACAGTTGCCCGTGGGATGCTCCTCGGTCACGGGCAGGAACTTTG
GCTCACCGTATACGGTGGCGCTGGAGCTGTACACGAACTTGAAGACATTG
TTGTCGGCCATCGCCTCCAGCAGGACATTGGTGCCGGTCATGTTGTTGTG
GTAGTACTGCAAAGGTATGCGGCAGGACTCACCCACGGCCTTCAGGGCGG
CAAAGTGGGCCACCATGTCGATTTTGTGCTCCTGGAAGACGGAGCGCACC
TGCTCCCTGTCCGTGATGTCCACTCTATAGAAGTTGACCTTC

BO08442.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 177..1050 892..19 4345 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:11:48
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 456..1329 892..19 4355 99.9 Minus
Gale-RA 1757 CG12030-RA 675..1548 892..19 4355 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:11:42
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651102 539..19 2590 99.8 Minus
3L 28110227 3L 650231..650523 830..538 1465 100 Minus
3L 28110227 3L 649356..649419 892..829 320 100 Minus
Blast to na_te.dros performed 2015-02-12 00:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 662..700 123 79.5 Plus

BO08442.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:15 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 177..1053 18..892 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:41:59 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 177..1053 18..892 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:41:30 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 675..1560 7..892 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:11:48 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 675..1560 7..892 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:11:48 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 649356..649419 829..892 100 -> Minus
3L 650233..650523 538..828 100 -> Minus
3L 650584..651114 7..537 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:41:30 Download gff for BO08442.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649356..649419 829..892 100 -> Minus
arm_3L 650233..650523 538..828 100 -> Minus
arm_3L 650584..651114 7..537 98   Minus

BO08442.5prime Sequence

887 bp (805 high quality bases) assembled on 2006-01-06

> BO08442.5prime
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTTCGCCTACATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAANGCTC

BO08442.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG12030-PA 1053 CG12030-RA 1..803 17..819 4015 100 Plus
CG12030-PA 1053 CG12030-RA 812..866 828..882 275 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:04:16
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1145 17..882 4285 99.8 Plus
Gale-RA 1757 CG12030-RA 499..1364 17..882 4285 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..650918 546..882 1590 99.4 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2015-02-12 12:04:13
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BO08442.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:15 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..870 17..887 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:00 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12030-PA 1..870 17..887 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:56:22 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1368 9..887 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:54:59 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 495..1368 9..887 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:54:59 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 649180..649419 17..256 100 -> Plus
3L 650584..650922 548..887 98   Plus
3L 650233..650523 257..547 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:56:22 Download gff for BO08442.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..650922 548..887 98   Plus

BO08442.complete Sequence

1084 bp assembled on 2011-06-28

GenBank Submission: KX799289

> BO08442.complete
GAAGTTATCAGTCGACATGGCCCCACCCACGGTCCTGGTCACCGGAGGAG
CCGGCTACATTGGCTCCCACACGGTTCTGGAGATGCTCAATGCGGGCTAC
AACGTCATCTGCGTGGACAACCTGTGCAACGCCTACAGCAGCGGGGCCAA
ACTGCCGGAGGCCCTCAGCCGGGTGCAGGAAATCACCGGCAAGAAGGTCA
ACTTCTATAGAGTGGACATCACGGACAGGGAGCAGGTGCGCTCCGTCTTC
CAGGAGCACAAAATCGACATGGTGGCCCACTTTGCCGCCCTGAAGGCCGT
GGGTGAGTCCTGCCGCATACCTTTGCAGTACTACCACAACAACATGACCG
GCACCAATGTCCTGCTGGAGGCGATGGCCGACAACAATGTCTTCAAGTTC
GTGTACAGCTCCAGCGCCACCGTATACGGTGAGCCAAAGTTCCTGCCCGT
GACCGAGGAGCATCCCACGGGCAACTGTACATCGCCCTACGGCAAGACTA
AATATTTCACCGAGGAGATTCTCAAGGATCTGTGCAAGTCTGACAAGCGT
TGGGCAGTGGTTTCGCTGCGGTACTTCAACCCGGTGGGTGCCCACATCAG
TGGTCGGATTGGCGAGGATCCGAACGGCGAGCCCAACAACCTGATGCCCT
ACATCGCACAGGTGGCCGTGGGTCGACGTCCCAGCCTGAGTGTCTACGGC
AGCGACTTTCCCACGCACGACGGCACCGGCGTGCGCGATTACATCCACAT
CGTGGACCTGGCCGAGGGACACGTAAAGGCGTTGGACAAGCTGCGCAACA
TCGCGGAGACGGGCTTTTTCGCCTACAATTTGGGCACCGGCGTGGGCTAC
TCGGTGCTGGACATGGTGAAGGCGTTTGAGAAGGCCTCCGGCAAGAAGGT
CAACTACACTCTGGTGGACCGACGGTCCGGAGATGTGGCCACTTGCTATG
CGGACGCCACGTTGGCGGATAAGAAGCTGGGCTGGAAGGCCGAGCGTGGC
ATCGACAAGATGTGCGAGGACACGTGGCGCTGGCAGAGCCAGAACCCAAA
CGGGTATGCTAACAAGGCAAGCTTTCTAGACCAT

BO08442.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:40
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1053 CG12030-PB 1..1050 17..1066 5235 99.9 Plus
Gale-RA 1053 CG12030-PA 1..1050 17..1066 5235 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:41
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-RB 1538 CG12030-RB 280..1329 17..1066 5235 99.9 Plus
Gale-RA 1757 CG12030-RA 499..1548 17..1066 5235 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:38
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 650582..651102 546..1066 2590 99.8 Plus
3L 28110227 3L 650231..650523 255..547 1465 100 Plus
3L 28110227 3L 649180..649419 17..256 1200 100 Plus
Blast to na_te.dros performed 2014-11-26 16:17:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dyak\HeT-A 5691 Dyak\HeT-A YAKHETA 5691bp 5077..5115 423..385 123 79.5 Minus

BO08442.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:29 Download gff for BO08442.complete
Subject Subject Range Query Range Percent Splice Strand
CG12030-RA 537..1586 17..1068 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:07 Download gff for BO08442.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1548 17..1068 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:45 Download gff for BO08442.complete
Subject Subject Range Query Range Percent Splice Strand
Gale-RA 499..1548 17..1068 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:45 Download gff for BO08442.complete
Subject Subject Range Query Range Percent Splice Strand
3L 650233..650523 257..547 100 -> Plus
3L 649180..649419 17..256 100 -> Plus
3L 650584..651102 548..1068 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:07 Download gff for BO08442.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 649180..649419 17..256 100 -> Plus
arm_3L 650233..650523 257..547 100 -> Plus
arm_3L 650584..651102 548..1068 99   Plus

BO08442.pep Sequence

Translation from 16 to 1084

> BO08442.pep
MAPPTVLVTGGAGYIGSHTVLEMLNAGYNVICVDNLCNAYSSGAKLPEAL
SRVQEITGKKVNFYRVDITDREQVRSVFQEHKIDMVAHFAALKAVGESCR
IPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHP
TGNCTSPYGKTKYFTEEILKDLCKSDKRWAVVSLRYFNPVGAHISGRIGE
DPNGEPNNLMPYIAQVAVGRRPSLSVYGSDFPTHDGTGVRDYIHIVDLAE
GHVKALDKLRNIAETGFFAYNLGTGVGYSVLDMVKAFEKASGKKVNYTLV
DRRSGDVATCYADATLADKKLGWKAERGIDKMCEDTWRWQSQNPNGYANK
ASFLDH

BO08442.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:51:23
Subject Length Description Subject Range Query Range Score Percent Strand
Gale-PB 350 CG12030-PB 1..350 1..350 1861 100 Plus
Gale-PA 350 CG12030-PA 1..350 1..350 1861 100 Plus