Clone Sequence Records
BO08448.3prime Sequence
858 bp (750 high quality bases) assembled on 2006-01-06
> BO08448.3prime
ATGGTCTAGAAAGCTTGCCTGGGCCAACCGGTGCAGGAGCATGAAGACAG
CGGTGACTCCGAGGCCCAGACTGACCATAGAAGCGCCGGCATTCTTGCGA
TCCGCTATGCTGCCGTGCGGAATCTCGTTCTCGGAGTCATCCGGCTGCGG
CTCCGGCACAGCCAGCTCGTCCACGGCCAGCATGGTGGCCTCGTTGATGG
TCCGCAGAAGGGGATAGTTCTGGCTCGATCTCTTGGGCGCGGCAGTCACC
TTCTGGAAGTCCTCGTACGTGTCCTCGTCCAGCTTGCAGTTACCCAGGAA
GTCGTCCGTGTCCACGGACCACACCATCACACCCGCAAGCCGCTTGGACA
TGGCGAACAACACCTTGTTGGCGATGGAGCGGGAGCTGTCGTAGGTCACC
ACGTTGATCTCCTGGGTGAAGACGTTTCGCTCGGACTTGGCCAGCACCTG
GCTGGTTTGCGGATCCCACTCCCTTGTCCATCCGGAGGTCTGGTTGCTCA
GTGTCTGGCAGATCTCGTTGTAGCCCAGGAAGCCGTCCTCCCGCGTGTAG
GGTCCCTTGAAGCCTACGCCTTCGCTGACGTCGTTCAGGAATCCACTGGC
CAACGTCTTGAAGGTGCGTCCGTAGAAGGGCAGGCCCATCACCAGCTTCT
CCGGCGGGGCGCCCAGTTTCAGCAGGTAGTCAATGGAGAATTTCACACTC
AGCGGATCATCCGCGGGCGCCGTGAGCGGAGCATTGTAACCAACTCGGCG
GTCCCAGCTGCCGTGGTAGTCGTAGCACATGATGTGCAGGTAGTCCAAGT
AACGCGAGATCTGCCGCACGTCATAGGCCTCGTCGATCACCTTCTTGGAG
GCTCCGAT
BO08448.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2054-PA | 1455 | Cht2-RA | 613..1452 | 858..19 | 4200 | 100 | Minus |
CG3986-PA | 1389 | Cht4-RA | 846..889 | 550..507 | 145 | 93.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 1543..2382 | 858..19 | 4200 | 100 | Minus |
Cht2-RC | 1911 | CG2054-RC | 979..1818 | 858..19 | 4200 | 100 | Minus |
Cht2-RA | 1645 | CG2054-RA | 713..1552 | 858..19 | 4200 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1752636..1753311 | 19..694 | 3380 | 100 | Plus |
3L | 28110227 | 3L | 1753438..1753602 | 694..858 | 825 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 17:41:58 has no hits.
BO08448.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:24 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-PA | 613..1455 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:12 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2054-PA | 613..1455 | 16..858 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:51 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 713..1552 | 19..858 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:22 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 713..1552 | 19..858 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:22 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1752636..1753310 | 19..693 | 100 | <- | Plus |
3L | 1753438..1753602 | 694..858 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:51 Download gff for
BO08448.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1752636..1753310 | 19..693 | 100 | <- | Plus |
arm_3L | 1753438..1753602 | 694..858 | 100 | | Plus |
BO08448.5prime Sequence
925 bp (835 high quality bases) assembled on 2006-01-06
> BO08448.5prime
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGC
BO08448.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG2054-PA | 1455 | Cht2-RA | 1..909 | 17..925 | 4520 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 931..1839 | 17..925 | 4530 | 99.9 | Plus |
Cht2-RC | 1911 | CG2054-RC | 367..1275 | 17..925 | 4530 | 99.9 | Plus |
Cht2-RA | 1645 | CG2054-RA | 101..1009 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:27:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1753438..1753944 | 793..287 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 1754001..1754168 | 287..120 | 825 | 99.4 | Minus |
3L | 28110227 | 3L | 1753179..1753311 | 925..793 | 665 | 100 | Minus |
3L | 28110227 | 3L | 1754236..1754342 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 23:27:56 has no hits.
BO08448.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:25 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:13 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2054-PA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:14 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..1009 | 9..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:53 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 95..1009 | 9..925 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:53 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1753179..1753310 | 794..925 | 100 | <- | Minus |
3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
3L | 1754001..1754165 | 123..287 | 99 | <- | Minus |
3L | 1754237..1754348 | 9..122 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:14 Download gff for
BO08448.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1753179..1753310 | 794..925 | 100 | <- | Minus |
arm_3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
arm_3L | 1754001..1754165 | 123..287 | 99 | <- | Minus |
arm_3L | 1754237..1754348 | 9..122 | 96 | | Minus |
BO08448.complete Sequence
1486 bp (1486 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631197
> BO08448.complete
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGCTTCAAGGGACCCTACACGCGGGAGG
ACGGCTTCCTGGGCTACAACGAGATCTGCCAGACACTGAGCAACCAGACC
TCCGGATGGACAAGGGAGTGGGATCCGCAAACCAGCCAGGTGCTGGCCAA
GTCCGAGCGAAACGTCTTCACCCAGGAGATCAACGTGGTGACCTACGACA
GCTCCCGCTCCATCGCCAACAAGGTGTTGTTCGCCATGTCCAAGCGGCTT
GCGGGTGTGATGGTGTGGTCCGTGGACACGGACGACTTCCTGGGTAACTG
CAAGCTGGACGAGGACACGTACGAGGACTTCCAGAAGGTGACTGCCGCGC
CCAAGAGATCGAGCCAGAACTATCCCCTTCTGCGGACCATCAACGAGGCC
ACCATGCTGGCCGTGGACGAGCTGGCTGTGCCGGAGCCGCAGCCGGATGA
CTCCGAGAACGAGATTCCGCACGGCAGCATAGCGGATCGCAAGAATGCCG
GCGCTTCTATGGTCAGTCTGGGCCTCGGAGTCACCGCTGTCTTCATGCTC
CTGCACCGGTTGGCCCAGGCAAGCTTTCTAGACCAT
BO08448.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 1455 | CG2054-PB | 1..1452 | 17..1468 | 7245 | 99.9 | Plus |
Cht2-RC | 1455 | CG2054-PC | 1..1452 | 17..1468 | 7245 | 99.9 | Plus |
Cht2-RA | 1455 | CG2054-PA | 1..1452 | 17..1468 | 7245 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-RB | 2690 | CG2054-RB | 931..2382 | 17..1468 | 7245 | 99.9 | Plus |
Cht2-RC | 1911 | CG2054-RC | 367..1818 | 17..1468 | 7245 | 99.9 | Plus |
Cht2-RA | 1645 | CG2054-RA | 101..1552 | 17..1468 | 7245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 1752636..1753311 | 1468..793 | 3380 | 100 | Minus |
3L | 28110227 | 3L | 1753438..1753944 | 793..287 | 2535 | 100 | Minus |
3L | 28110227 | 3L | 1754001..1754168 | 287..120 | 825 | 99.4 | Minus |
3L | 28110227 | 3L | 1754236..1754342 | 123..17 | 535 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:00:21 has no hits.
BO08448.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:13 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 1..1455 | 17..1471 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:07 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 90..1547 | 9..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:44 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 101..1552 | 17..1470 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:14 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 90..1547 | 9..1468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:04 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cht2-RA | 101..1552 | 17..1470 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:04 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 1752633..1753310 | 794..1470 | 99 | <- | Minus |
3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
3L | 1754001..1754165 | 123..287 | 99 | <- | Minus |
3L | 1754237..1754342 | 17..122 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:44 Download gff for
BO08448.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 1752633..1753310 | 794..1470 | 99 | <- | Minus |
arm_3L | 1753438..1753943 | 288..793 | 100 | <- | Minus |
arm_3L | 1754001..1754165 | 123..287 | 99 | <- | Minus |
arm_3L | 1754237..1754342 | 17..122 | 100 | | Minus |
BO08448.pep Sequence
Translation from 16 to 1486
> BO08448.pep
MTLRSRLSGEAPQLWLLLLLASTASSLWASVAARTGPLHDKVVVCYVSTW
AVYRPEQGAYAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDLKEEY
GKGGYEKMTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLRGRFVKQ
VSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELREEFDEHGLL
LTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRRVGYNAPLT
APADDPLSVKFSIDYLLKLGAPPEKLVMGLPFYGRTFKTLASGFLNDVSE
GVGFKGPYTREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNV
FTQEINVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDDFLGNCKLDED
TYEDFQKVTAAPKRSSQNYPLLRTINEATMLAVDELAVPEPQPDDSENEI
PHGSIADRKNAGASMVSLGLGVTAVFMLLHRLAQASFLDH
BO08448.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cht2-PB | 484 | CG2054-PB | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht2-PC | 484 | CG2054-PC | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht2-PA | 484 | CG2054-PA | 1..484 | 1..484 | 2538 | 100 | Plus |
Cht8-PA | 476 | CG9357-PA | 4..397 | 7..426 | 748 | 37.9 | Plus |
Cht4-PA | 462 | CG3986-PA | 23..370 | 40..428 | 723 | 39.9 | Plus |