Clone BO08448 Report

Search the DGRC for BO08448

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCht2-RA
Protein status:BO08448.pep: validated full length
Sequenced Size:1486

Clone Sequence Records

BO08448.3prime Sequence

858 bp (750 high quality bases) assembled on 2006-01-06

> BO08448.3prime
ATGGTCTAGAAAGCTTGCCTGGGCCAACCGGTGCAGGAGCATGAAGACAG
CGGTGACTCCGAGGCCCAGACTGACCATAGAAGCGCCGGCATTCTTGCGA
TCCGCTATGCTGCCGTGCGGAATCTCGTTCTCGGAGTCATCCGGCTGCGG
CTCCGGCACAGCCAGCTCGTCCACGGCCAGCATGGTGGCCTCGTTGATGG
TCCGCAGAAGGGGATAGTTCTGGCTCGATCTCTTGGGCGCGGCAGTCACC
TTCTGGAAGTCCTCGTACGTGTCCTCGTCCAGCTTGCAGTTACCCAGGAA
GTCGTCCGTGTCCACGGACCACACCATCACACCCGCAAGCCGCTTGGACA
TGGCGAACAACACCTTGTTGGCGATGGAGCGGGAGCTGTCGTAGGTCACC
ACGTTGATCTCCTGGGTGAAGACGTTTCGCTCGGACTTGGCCAGCACCTG
GCTGGTTTGCGGATCCCACTCCCTTGTCCATCCGGAGGTCTGGTTGCTCA
GTGTCTGGCAGATCTCGTTGTAGCCCAGGAAGCCGTCCTCCCGCGTGTAG
GGTCCCTTGAAGCCTACGCCTTCGCTGACGTCGTTCAGGAATCCACTGGC
CAACGTCTTGAAGGTGCGTCCGTAGAAGGGCAGGCCCATCACCAGCTTCT
CCGGCGGGGCGCCCAGTTTCAGCAGGTAGTCAATGGAGAATTTCACACTC
AGCGGATCATCCGCGGGCGCCGTGAGCGGAGCATTGTAACCAACTCGGCG
GTCCCAGCTGCCGTGGTAGTCGTAGCACATGATGTGCAGGTAGTCCAAGT
AACGCGAGATCTGCCGCACGTCATAGGCCTCGTCGATCACCTTCTTGGAG
GCTCCGAT

BO08448.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG2054-PA 1455 Cht2-RA 613..1452 858..19 4200 100 Minus
CG3986-PA 1389 Cht4-RA 846..889 550..507 145 93.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 17:42:02
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 1543..2382 858..19 4200 100 Minus
Cht2-RC 1911 CG2054-RC 979..1818 858..19 4200 100 Minus
Cht2-RA 1645 CG2054-RA 713..1552 858..19 4200 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 17:41:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1752636..1753311 19..694 3380 100 Plus
3L 28110227 3L 1753438..1753602 694..858 825 100 Plus
Blast to na_te.dros performed on 2015-02-02 17:41:58 has no hits.

BO08448.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:24 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-PA 613..1455 16..858 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:12 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2054-PA 613..1455 16..858 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 17:43:51 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 713..1552 19..858 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:55:22 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 713..1552 19..858 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:55:22 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 1752636..1753310 19..693 100 <- Plus
3L 1753438..1753602 694..858 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 17:43:51 Download gff for BO08448.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1752636..1753310 19..693 100 <- Plus
arm_3L 1753438..1753602 694..858 100   Plus

BO08448.5prime Sequence

925 bp (835 high quality bases) assembled on 2006-01-06

> BO08448.5prime
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGC

BO08448.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG2054-PA 1455 Cht2-RA 1..909 17..925 4520 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 23:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 931..1839 17..925 4530 99.9 Plus
Cht2-RC 1911 CG2054-RC 367..1275 17..925 4530 99.9 Plus
Cht2-RA 1645 CG2054-RA 101..1009 17..925 4530 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 23:27:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1753438..1753944 793..287 2535 100 Minus
3L 28110227 3L 1754001..1754168 287..120 825 99.4 Minus
3L 28110227 3L 1753179..1753311 925..793 665 100 Minus
3L 28110227 3L 1754236..1754342 123..17 535 100 Minus
Blast to na_te.dros performed on 2015-02-11 23:27:56 has no hits.

BO08448.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:25 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:13 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2054-PA 1..909 17..925 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 19:54:14 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..1009 9..925 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:50:53 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 95..1009 9..925 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:50:53 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 1753179..1753310 794..925 100 <- Minus
3L 1753438..1753943 288..793 100 <- Minus
3L 1754001..1754165 123..287 99 <- Minus
3L 1754237..1754348 9..122 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 19:54:14 Download gff for BO08448.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1753179..1753310 794..925 100 <- Minus
arm_3L 1753438..1753943 288..793 100 <- Minus
arm_3L 1754001..1754165 123..287 99 <- Minus
arm_3L 1754237..1754348 9..122 96   Minus

BO08448.complete Sequence

1486 bp (1486 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631197

> BO08448.complete
GAAGTTATCAGTCGACATGACGCTGAGGAGCAGACTTAGTGGGGAAGCAC
CGCAGCTGTGGCTGCTCCTCCTCCTGGCCTCCACTGCGAGCAGCTTGTGG
GCTTCGGTGGCCGCCAGGACAGGACCCCTGCACGACAAGGTGGTGGTTTG
CTACGTTTCCACATGGGCTGTTTACCGGCCGGAGCAGGGTGCCTATGCCA
TCGAGAACTTCGACCCCAATTTGTGCACCCATGTGGTGTACGCCTTTGCC
GGCCTGGACATCACCCAGGCAGCCATAAAGTCGTTGGATCCCTGGCAGGA
CCTAAAGGAGGAGTACGGCAAGGGTGGCTACGAGAAAATGACGGGTCTGA
AGCGCAGCCATCCGCATCTGAAGGTCAGCCTGGCCATCGGCGGCTGGAAC
GAGGGATCGGCCAACTACTCCACCCTGGTGGCCAACAATCTGCTGCGCGG
CAGGTTCGTCAAGCAGGTGTCCAGTTTCATACGCAAGTACAACTTCGACG
GGCTGGATCTCGACTGGGAGTATCCCACGCAGCGGAAGGGCAAGCCCGCG
GATCGCGAGAACTTCGTTCTGCTGACCAAGGAGCTGCGCGAGGAGTTCGA
CGAGCACGGCCTGCTGCTGACCTCCGCCATCGGAGCCTCCAAGAAGGTGA
TCGACGAGGCCTATGACGTGCGGCAGATCTCGCGTTACTTGGACTACCTG
CACATCATGTGCTACGACTACCACGGCAGCTGGGACCGCCGAGTTGGTTA
CAATGCTCCGCTCACGGCGCCCGCGGATGATCCGCTGAGTGTGAAATTCT
CCATTGACTACCTGCTGAAACTGGGCGCCCCGCCGGAGAAGCTGGTGATG
GGCCTGCCCTTCTACGGACGCACCTTCAAGACGTTGGCCAGTGGATTCCT
GAACGACGTCAGCGAAGGCGTAGGCTTCAAGGGACCCTACACGCGGGAGG
ACGGCTTCCTGGGCTACAACGAGATCTGCCAGACACTGAGCAACCAGACC
TCCGGATGGACAAGGGAGTGGGATCCGCAAACCAGCCAGGTGCTGGCCAA
GTCCGAGCGAAACGTCTTCACCCAGGAGATCAACGTGGTGACCTACGACA
GCTCCCGCTCCATCGCCAACAAGGTGTTGTTCGCCATGTCCAAGCGGCTT
GCGGGTGTGATGGTGTGGTCCGTGGACACGGACGACTTCCTGGGTAACTG
CAAGCTGGACGAGGACACGTACGAGGACTTCCAGAAGGTGACTGCCGCGC
CCAAGAGATCGAGCCAGAACTATCCCCTTCTGCGGACCATCAACGAGGCC
ACCATGCTGGCCGTGGACGAGCTGGCTGTGCCGGAGCCGCAGCCGGATGA
CTCCGAGAACGAGATTCCGCACGGCAGCATAGCGGATCGCAAGAATGCCG
GCGCTTCTATGGTCAGTCTGGGCCTCGGAGTCACCGCTGTCTTCATGCTC
CTGCACCGGTTGGCCCAGGCAAGCTTTCTAGACCAT

BO08448.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:00:22
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 1455 CG2054-PB 1..1452 17..1468 7245 99.9 Plus
Cht2-RC 1455 CG2054-PC 1..1452 17..1468 7245 99.9 Plus
Cht2-RA 1455 CG2054-PA 1..1452 17..1468 7245 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-RB 2690 CG2054-RB 931..2382 17..1468 7245 99.9 Plus
Cht2-RC 1911 CG2054-RC 367..1818 17..1468 7245 99.9 Plus
Cht2-RA 1645 CG2054-RA 101..1552 17..1468 7245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:00:20
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 1752636..1753311 1468..793 3380 100 Minus
3L 28110227 3L 1753438..1753944 793..287 2535 100 Minus
3L 28110227 3L 1754001..1754168 287..120 825 99.4 Minus
3L 28110227 3L 1754236..1754342 123..17 535 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:00:21 has no hits.

BO08448.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:13 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 1..1455 17..1471 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:07 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 90..1547 9..1468 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:47:44 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 101..1552 17..1470 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:14 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 90..1547 9..1468 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:09:04 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
Cht2-RA 101..1552 17..1470 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:09:04 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
3L 1752633..1753310 794..1470 99 <- Minus
3L 1753438..1753943 288..793 100 <- Minus
3L 1754001..1754165 123..287 99 <- Minus
3L 1754237..1754342 17..122 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:47:44 Download gff for BO08448.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 1752633..1753310 794..1470 99 <- Minus
arm_3L 1753438..1753943 288..793 100 <- Minus
arm_3L 1754001..1754165 123..287 99 <- Minus
arm_3L 1754237..1754342 17..122 100   Minus

BO08448.pep Sequence

Translation from 16 to 1486

> BO08448.pep
MTLRSRLSGEAPQLWLLLLLASTASSLWASVAARTGPLHDKVVVCYVSTW
AVYRPEQGAYAIENFDPNLCTHVVYAFAGLDITQAAIKSLDPWQDLKEEY
GKGGYEKMTGLKRSHPHLKVSLAIGGWNEGSANYSTLVANNLLRGRFVKQ
VSSFIRKYNFDGLDLDWEYPTQRKGKPADRENFVLLTKELREEFDEHGLL
LTSAIGASKKVIDEAYDVRQISRYLDYLHIMCYDYHGSWDRRVGYNAPLT
APADDPLSVKFSIDYLLKLGAPPEKLVMGLPFYGRTFKTLASGFLNDVSE
GVGFKGPYTREDGFLGYNEICQTLSNQTSGWTREWDPQTSQVLAKSERNV
FTQEINVVTYDSSRSIANKVLFAMSKRLAGVMVWSVDTDDFLGNCKLDED
TYEDFQKVTAAPKRSSQNYPLLRTINEATMLAVDELAVPEPQPDDSENEI
PHGSIADRKNAGASMVSLGLGVTAVFMLLHRLAQASFLDH

BO08448.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:07
Subject Length Description Subject Range Query Range Score Percent Strand
Cht2-PB 484 CG2054-PB 1..484 1..484 2538 100 Plus
Cht2-PC 484 CG2054-PC 1..484 1..484 2538 100 Plus
Cht2-PA 484 CG2054-PA 1..484 1..484 2538 100 Plus
Cht8-PA 476 CG9357-PA 4..397 7..426 748 37.9 Plus
Cht4-PA 462 CG3986-PA 23..370 40..428 723 39.9 Plus