Clone Sequence Records
BO08450.3prime Sequence
959 bp (846 high quality bases) assembled on 2006-01-06
> BO08450.3prime
ATGGTCTAGAAAGCTTGCGGTGCTAAACGTTCCACAGCAATCAGATGGGA
TTTTGTCTGTTGGTCCCCAGCCCAATGGCACACCCAAGCGGCTATTTTCC
TGCTTAAGCCACTGGTAGAGCGGTTCAAAGTACTCCAGCAGAGCGGCTGG
GTCCATTTCCGTTTCGCCTGTAAACTCCTCCAACACCTCCTTCCAATGGC
GTGAGTTGCCCTTTGAGAGGAACTGGCTCAGTGATCGTCCAGCTGCTTTG
CTTCCAAAGATATCACAGTTGTCCAGAGTCAGACGACTATTGTTGGGCGC
ATATTGTCCGGCCTTGCGGCACAGAGCCTTGTGGAACTGAAACTGGAAGA
TGTGGGCGGCAAAGTAGCGCAGGTACTCCACATCTGCATCAATGTGATAC
TTGGCTGGCGGGTCAAAGTCCTTTTCGGTGCGGAATACTGGTGGCTCGAC
GCCGCCAAACTCGGATCGCATCTGCCAGAAGCCGCAGTTCCATTGCGACT
CATCTAGCTCATTGCGAAAAACGGCATAGCGATACTTATCCACGGCGTAG
CCAAAGGGTAGGAAGACAATCTTGGAGAGGGCCTGCTTGAACAACTGATT
GATTCGACTCTTTTCGTCTAGTCTACCATTTTCGATCAGACCAATGGCCT
TCAAGTGCTTGGCCGACATCACCGACAGGGCTATCACATCGCCCACAGCT
TCATGGAAGCCAGGATTGGGAGCTCCCCGGTAGACAGCCGGCTGTTGTTC
GTATTGCAGATAGTACTGAATGTGTCCTAGCTCATGATGCACTACATAAA
AGTAGTGGCTGTCCACTTCGGTGCACATCTTGATCCTTACATCGCTGTCT
TGGTAAAAGTCCCATGCGGAGGCGTGGCAAACCACGTGACGATCGTCGGG
ACGGGTGAGCACACTCAGATTCCAGAAACTGGGAGGAAGCGCGCGCATTC
CGAGCGACT
BO08450.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10593-PA | 1893 | Acer-RA | 950..1890 | 959..19 | 4705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 11:13:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 3198 | CG10593-RB | 1295..2235 | 959..19 | 4705 | 100 | Minus |
| Acer-RA | 2342 | CG10593-RA | 1295..2235 | 959..19 | 4705 | 100 | Minus |
| Ance-RC | 2048 | CG8827-RC | 1490..1731 | 492..251 | 235 | 73.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 11:13:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8523779..8524684 | 959..54 | 4530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-06 11:13:09 has no hits.
BO08450.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:28 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-PA | 950..1893 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:17 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10593-PA | 950..1893 | 18..959 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:33:54 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 1295..2235 | 19..959 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:43:28 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 1295..2235 | 19..959 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:43:28 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8523779..8524684 | 54..959 | 100 | -> | Minus |
| 2L | 8524743..8524777 | 19..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:33:54 Download gff for
BO08450.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8523779..8524684 | 54..959 | 100 | -> | Minus |
| arm_2L | 8524743..8524777 | 19..53 | 100 | | Minus |
BO08450.5prime Sequence
883 bp (843 high quality bases) assembled on 2006-01-06
> BO08450.5prime
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTATCCGGAGAAA
BO08450.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10593-PA | 1893 | Acer-RA | 1..866 | 17..882 | 4330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:52:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 3198 | CG10593-RB | 346..1211 | 17..882 | 4330 | 100 | Plus |
| Acer-RA | 2342 | CG10593-RA | 346..1211 | 17..882 | 4330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8522401..8522968 | 64..631 | 2840 | 100 | Plus |
| 2L | 23513712 | 2L | 8523442..8523695 | 629..882 | 1270 | 100 | Plus |
| 2L | 23513712 | 2L | 8522278..8522325 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:52:29 has no hits.
BO08450.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:29 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:19 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10593-PA | 1..864 | 17..880 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:06 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 343..1209 | 14..880 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:29 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 343..1209 | 14..880 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:29 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8522275..8522325 | 14..64 | 98 | -> | Plus |
| 2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
| 2L | 8523443..8523693 | 630..880 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:06 Download gff for
BO08450.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8522275..8522325 | 14..64 | 98 | -> | Plus |
| arm_2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
| arm_2L | 8523443..8523693 | 630..880 | 100 | | Plus |
BO08450.complete Sequence
1924 bp (1924 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ631198
> BO08450.complete
GAAGTTATCAGTCGACATGGGGGCATGCAATATAACAGTCTTATTGCTGG
TCATCATGTTGTGGCTACCCCATGGTCTGTCCATGGGCAATAGCTGCTCG
GCATCGGTGCTGGAGGCGCGTAGGTTCTTCGAGCTGGAAAATGAACAATT
GCGAAGGCGTTTCCATGAGGAATTCCTTTCCGGCTACAACTATAACACCA
ATGTAACGGAGGCGAATCGCCAGGCCATGATCGAAGTGTATGCCCGCAAT
GCGGAACTGAATAAGCGACTCGCGCAGCAGATAAAGTCCTCCGATTACGT
TCAGTCCGAGGATGCGGATATACGACGACAGGCCGAGCACCTATCCAAAT
TGGGTGCATCCGCTCTGAATGCCGACGACTACCTGGCCCTGCAGAATGCC
ATCAGTTCGATGCAGACGAACTATGCTACCGCCACCGTGTGCTCGTACAC
CAATCGCAGTGATTGCTCTCTCACCCTGGAGCCGCACATACAGGAGCGTC
TGTCCCATAGCCGTGATCCTGCCGAACTGGCTTGGTATTGGCGGGAGTGG
CACGATAAGTCCGGAACTCCCATGCGGCAGAACTTCGCCGAGTATGTGCG
ACTGACGCGCAAGGCATCTCAGTTGAATGGTCACCGCTCCTATGCCGACT
ACTGGGTGCAGTTCTACGAGGACCCGGACTTTGAGCGACAACTGGATGCC
ACTTTTAAGCAGCTGCTGCCCTTCTACCGACAGCTCCACGGCTACGTTCG
CTTTCGTTTGCGGCAGCACTACGGTCCGGATGTGATGCCAGCGGAGGGAA
ACATACCCATAAGCCTGCTGGGCAACATGTGGGGTCAGTCGTGGAACGAG
CTGCTCGATTTGTTTACTCCGTATCCGGAGAAGCCGTTTGTGGACGTGAA
GGCCGAAATGGAGAAGCAGGGATACACGGTGCAAAAGCTGTTTGAGCTGG
GTGATCAGTTCTTCCAGTCGCTCGGAATGCGCGCGCTTCCTCCCAGTTTC
TGGAATCTGAGTGTGCTCACCCGTCCCGACGATCGTCACGTGGTTTGCCA
CGCCTCCGCATGGGACTTTTACCAAGACAGCGATGTAAGGATCAAGATGT
GCACCGAAGTGGACAGCCACTACTTTTATGTAGTGCATCATGAGCTAGGA
CACATTCAGTACTATCTGCAATACGAACAACAGCCGGCTGTCTACCGGGG
AGCTCCCAATCCTGGCTTCCATGAAGCTGTGGGCGATGTGATAGCCCTGT
CGGTGATGTCGGCCAAGCACTTGAAGGCCATTGGTCTGATCGAAAATGGT
AGACTAGACGAAAAGAGTCGAATCAATCAGTTGTTCAAGCAGGCCCTCTC
CAAGATTGTCTTCCTACCCTTTGGCTACGCCGTGGATAAGTATCGCTATG
CCGTTTTTCGCAATGAGCTAGATGAGTCGCAATGGAACTGCGGCTTCTGG
CAGATGCGATCCGAGTTTGGCGGCGTCGAGCCACCAGTATTCCGCACCGA
AAAGGACTTTGACCCGCCAGCCAAGTATCACATTGATGCAGATGTGGAGT
ACCTGCGCTACTTTGCCGCCCACATCTTCCAGTTTCAGTTCCACAAGGCT
CTGTGCCGCAAGGCCGGACAATATGCGCCCAACAATAGTCGTCTGACTCT
GGACAACTGTGATATCTTTGGAAGCAAAGCAGCTGGACGATCACTGAGCC
AGTTCCTCTCAAAGGGCAACTCACGCCATTGGAAGGAGGTGTTGGAGGAG
TTTACAGGCGAAACGGAAATGGACCCAGCCGCTCTGCTGGAGTACTTTGA
ACCGCTCTACCAGTGGCTTAAGCAGGAAAATAGCCGCTTGGGTGTGCCAT
TGGGCTGGGGACCAACAGACAAAATCCCATCTGATTGCTGTGGAACGTTT
AGCACCGCAAGCTTTCTAGACCAT
BO08450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 1893 | CG10593-PB | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| Acer-RA | 1893 | CG10593-PA | 1..1890 | 17..1906 | 9450 | 100 | Plus |
| Ance-RC | 1848 | CG8827-PC | 1393..1596 | 1433..1636 | 225 | 74 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-RB | 3198 | CG10593-RB | 346..2235 | 17..1906 | 9450 | 100 | Plus |
| Acer-RA | 2342 | CG10593-RA | 346..2235 | 17..1906 | 9450 | 100 | Plus |
| Ance-RC | 2048 | CG8827-RC | 1490..1693 | 1433..1636 | 225 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:28:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8523442..8524684 | 629..1871 | 6215 | 100 | Plus |
| 2L | 23513712 | 2L | 8522401..8522968 | 64..631 | 2840 | 100 | Plus |
| 2L | 23513712 | 2L | 8522278..8522325 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:28:21 has no hits.
BO08450.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:00:26 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 1..1893 | 17..1907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:18:45 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 377..2269 | 14..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:31 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 346..2235 | 17..1908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:00:26 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 377..2269 | 14..1906 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:08:34 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Acer-RA | 346..2235 | 17..1908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:08:34 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8522278..8522325 | 17..64 | 100 | -> | Plus |
| 2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
| 2L | 8523443..8524684 | 630..1871 | 100 | -> | Plus |
| 2L | 8524743..8524777 | 1872..1908 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:31 Download gff for
BO08450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8522278..8522325 | 17..64 | 100 | -> | Plus |
| arm_2L | 8522402..8522966 | 65..629 | 100 | -> | Plus |
| arm_2L | 8523443..8524684 | 630..1871 | 100 | -> | Plus |
| arm_2L | 8524743..8524777 | 1872..1908 | 94 | | Plus |
BO08450.pep Sequence
Translation from 16 to 1924
> BO08450.pep
MGACNITVLLLVIMLWLPHGLSMGNSCSASVLEARRFFELENEQLRRRFH
EEFLSGYNYNTNVTEANRQAMIEVYARNAELNKRLAQQIKSSDYVQSEDA
DIRRQAEHLSKLGASALNADDYLALQNAISSMQTNYATATVCSYTNRSDC
SLTLEPHIQERLSHSRDPAELAWYWREWHDKSGTPMRQNFAEYVRLTRKA
SQLNGHRSYADYWVQFYEDPDFERQLDATFKQLLPFYRQLHGYVRFRLRQ
HYGPDVMPAEGNIPISLLGNMWGQSWNELLDLFTPYPEKPFVDVKAEMEK
QGYTVQKLFELGDQFFQSLGMRALPPSFWNLSVLTRPDDRHVVCHASAWD
FYQDSDVRIKMCTEVDSHYFYVVHHELGHIQYYLQYEQQPAVYRGAPNPG
FHEAVGDVIALSVMSAKHLKAIGLIENGRLDEKSRINQLFKQALSKIVFL
PFGYAVDKYRYAVFRNELDESQWNCGFWQMRSEFGGVEPPVFRTEKDFDP
PAKYHIDADVEYLRYFAAHIFQFQFHKALCRKAGQYAPNNSRLTLDNCDI
FGSKAAGRSLSQFLSKGNSRHWKEVLEEFTGETEMDPAALLEYFEPLYQW
LKQENSRLGVPLGWGPTDKIPSDCCGTFSTASFLDH
BO08450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:58:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Acer-PB | 630 | CG10593-PB | 1..630 | 1..630 | 3393 | 100 | Plus |
| Acer-PA | 630 | CG10593-PA | 1..630 | 1..630 | 3393 | 100 | Plus |
| Ance-PC | 615 | CG8827-PC | 23..614 | 32..622 | 1663 | 51 | Plus |
| Ance-PB | 615 | CG8827-PB | 23..614 | 32..622 | 1663 | 51 | Plus |
| Ance-PA | 615 | CG8827-PA | 23..614 | 32..622 | 1663 | 51 | Plus |
