Clone BO08451 Report

Search the DGRC for BO08451

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:84
Well:51
Vector:pDNR-Dual
Associated Gene/TranscriptPvf1-RA
Protein status:BO08451.pep: validated full length
Sequenced Size:1009

Clone Sequence Records

BO08451.3prime Sequence

919 bp (795 high quality bases) assembled on 2006-01-06

> BO08451.3prime
ATGGTCTAGAAAGCTTGCAACACTGTACAGGGTGGTGTTATCGGGATCCA
CCTGTACCGCCTGGACAATGAAGCGTTTGCGATCCAAGACATCGATGGGT
GCAGCCGGGTCGGTGCACTTGCACTGCGTCTCATCGAAGACGGTGCCGGT
GGTGCAGCTCTGGTTGTAGCGGCAAACGCAGGTGCAATTGTCGTCCACCC
AATACTTGTTCTCGGCCTGCTCCAGGCACTTGTCCCGGGCATCCGTGTTG
TGGCACTCGCAGCGGCACAAATCCTTGCGATACGACTGGTACACGTTGCA
GTCCTCCGCCTTCGTGCGACAATCGCAGCGGCACTGCGTATGCTGCTCCA
CGGTGATGATGGTGAACGGTCTGCGTCCGCTGGTGGCCGCCCGGTCCACC
TTGCGCACCCGCAGCTGCACCTGCTCTACCTCCGTTGGCTGGCAGGAGAT
CAGCGTGGATCCGCAGCATCCATTGCATCGGCTGATCCGCGTGCACGCGG
GCATATAGTAGTAGTTCGCCTCGTCCTCCGCCGGTGGCTTCAGCTCCACG
ATCGTCGGTTGCGGGGAGCAGCTCGCCGGCGTTGCATTCCTCACGGTTGA
TTTCATGATGCTGCGCTTAAAGTTTTCCTTGGAGGAGGGCATCTCGCCGG
ACACATCGTAGTCGGCGGTCACGTTGGTCAGCTCAGCGGACACGGACAGT
GGGAGCGTCAATGGTGTTCCGGCTTCCGCAGCTGCTCCTTGGCAGCAGCT
GCCCTCCAGTGCACCCGGCGCCGCACTGGGATCGTCCGCCTGGCGGAGCA
NGCGCACCTTGGTCTGCGTGGAGGAGGAGGACGTGGCGGCGGCGTAGAAG
AACCTCTGCGATGGGTGCCTGTTGTTCGGGGACACCAAGGAACCCGCCGC
TGCCTCGCTGACGATCAGG

BO08451.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG7103-PA 978 Pvf1-RA 75..975 919..19 4436 99.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RB 1804 CG7103-RB 310..1210 919..19 4464 99.7 Minus
Pvf1-RA 1896 CG7103-RA 402..1302 919..19 4464 99.7 Minus
Pvf1-RC 2783 CG7103-RC 402..1212 919..109 4014 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:55
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841120 599..109 2455 100 Minus
X 23542271 X 18838129..18838342 919..706 1029 98.6 Minus
X 23542271 X 18842218..18842307 108..19 450 100 Minus
X 23542271 X 18840381..18840460 706..627 400 100 Minus
Blast to na_te.dros performed on 2015-02-12 00:07:58 has no hits.

BO08451.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:30 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-PA 75..978 16..919 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:20 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7103-PA 75..978 16..919 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:49 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 402..1302 19..919 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:02 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 402..1302 19..919 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:02 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
X 18838129..18838342 706..919 98 -> Minus
X 18840382..18840460 627..705 100 -> Minus
X 18840532..18840558 600..626 100 -> Minus
X 18840630..18841120 109..599 100 -> Minus
X 18842218..18842307 19..108 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:49 Download gff for BO08451.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732162..18732375 706..919 98 -> Minus
arm_X 18734415..18734493 627..705 100 -> Minus
arm_X 18734565..18734591 600..626 100 -> Minus
arm_X 18734663..18735153 109..599 100 -> Minus
arm_X 18736251..18736340 19..108 100   Minus

BO08451.5prime Sequence

908 bp (789 high quality bases) assembled on 2006-01-06

> BO08451.5prime
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCCACGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTG

BO08451.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG7103-PA 978 Pvf1-RA 1..892 17..908 4410 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:07:27
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 1896 CG7103-RA 327..1219 16..908 4435 99.8 Plus
Pvf1-RC 2783 CG7103-RC 327..1212 16..901 4400 99.8 Plus
Pvf1-RB 1804 CG7103-RB 266..1127 47..908 4280 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:07:19
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841120 411..901 2425 99.6 Plus
X 23542271 X 18838054..18838342 16..304 1445 100 Plus
X 23542271 X 18840381..18840460 304..383 400 100 Plus
Blast to na_te.dros performed on 2015-02-12 12:07:23 has no hits.

BO08451.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:31 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:22 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7103-PA 1..892 17..908 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:01 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 321..1219 9..908 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:44 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 321..1219 9..908 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:44 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
X 18840630..18841123 411..908 98   Plus
X 18838048..18838342 9..304 98 -> Plus
X 18840382..18840460 305..383 100 -> Plus
X 18840532..18840558 384..410 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:01 Download gff for BO08451.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732081..18732375 9..304 98 -> Plus
arm_X 18734415..18734493 305..383 100 -> Plus
arm_X 18734565..18734591 384..410 100 -> Plus
arm_X 18734663..18735156 411..908 98   Plus

BO08451.complete Sequence

1009 bp (1009 high quality bases) assembled on 2005-12-21

GenBank Submission: FJ631199

> BO08451.complete
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTGCACCCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGG
CGGTACAGGTGGATCCCGATAACACCACCCTGTACAGTGTTGCAAGCTTT
CTAGACCAT

BO08451.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:35
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 978 CG7103-PA 1..975 17..991 4875 100 Plus
Pvf1-RB 945 CG7103-PB 1..942 50..991 4710 100 Plus
Pvf1-RC 903 CG7103-PC 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-RA 1896 CG7103-RA 327..1302 16..991 4880 100 Plus
Pvf1-RB 1804 CG7103-RB 266..1210 47..991 4725 100 Plus
Pvf1-RC 2783 CG7103-RC 327..1212 16..901 4430 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18840630..18841120 411..901 2455 100 Plus
X 23542271 X 18838054..18838342 16..304 1445 100 Plus
X 23542271 X 18842218..18842307 902..991 450 100 Plus
X 23542271 X 18840381..18840460 304..383 400 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:56:35 has no hits.

BO08451.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:15 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 1..978 17..994 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:09 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 299..1280 9..991 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:14 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 328..1302 17..993 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:15 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 299..1280 9..991 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:18 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
Pvf1-RA 328..1302 17..993 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:18 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
X 18838055..18838342 17..304 100 -> Plus
X 18840382..18840460 305..383 100 -> Plus
X 18840532..18840558 384..410 100 -> Plus
X 18840630..18841120 411..901 100 -> Plus
X 18842218..18842307 902..993 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:14 Download gff for BO08451.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 18732088..18732375 17..304 100 -> Plus
arm_X 18734415..18734493 305..383 100 -> Plus
arm_X 18734565..18734591 384..410 100 -> Plus
arm_X 18734663..18735153 411..901 100 -> Plus
arm_X 18736251..18736340 902..993 97   Plus

BO08451.pep Sequence

Translation from 16 to 1009

> BO08451.pep
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSVASFLDH

BO08451.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:06
Subject Length Description Subject Range Query Range Score Percent Strand
Pvf1-PA 325 CG7103-PA 1..325 1..325 1722 100 Plus
Pvf1-PB 314 CG7103-PB 1..314 12..325 1670 100 Plus
Pvf1-PC 300 CG7103-PC 1..295 1..295 1571 100 Plus