Clone Sequence Records
BO08451.3prime Sequence
919 bp (795 high quality bases) assembled on 2006-01-06
> BO08451.3prime
ATGGTCTAGAAAGCTTGCAACACTGTACAGGGTGGTGTTATCGGGATCCA
CCTGTACCGCCTGGACAATGAAGCGTTTGCGATCCAAGACATCGATGGGT
GCAGCCGGGTCGGTGCACTTGCACTGCGTCTCATCGAAGACGGTGCCGGT
GGTGCAGCTCTGGTTGTAGCGGCAAACGCAGGTGCAATTGTCGTCCACCC
AATACTTGTTCTCGGCCTGCTCCAGGCACTTGTCCCGGGCATCCGTGTTG
TGGCACTCGCAGCGGCACAAATCCTTGCGATACGACTGGTACACGTTGCA
GTCCTCCGCCTTCGTGCGACAATCGCAGCGGCACTGCGTATGCTGCTCCA
CGGTGATGATGGTGAACGGTCTGCGTCCGCTGGTGGCCGCCCGGTCCACC
TTGCGCACCCGCAGCTGCACCTGCTCTACCTCCGTTGGCTGGCAGGAGAT
CAGCGTGGATCCGCAGCATCCATTGCATCGGCTGATCCGCGTGCACGCGG
GCATATAGTAGTAGTTCGCCTCGTCCTCCGCCGGTGGCTTCAGCTCCACG
ATCGTCGGTTGCGGGGAGCAGCTCGCCGGCGTTGCATTCCTCACGGTTGA
TTTCATGATGCTGCGCTTAAAGTTTTCCTTGGAGGAGGGCATCTCGCCGG
ACACATCGTAGTCGGCGGTCACGTTGGTCAGCTCAGCGGACACGGACAGT
GGGAGCGTCAATGGTGTTCCGGCTTCCGCAGCTGCTCCTTGGCAGCAGCT
GCCCTCCAGTGCACCCGGCGCCGCACTGGGATCGTCCGCCTGGCGGAGCA
NGCGCACCTTGGTCTGCGTGGAGGAGGAGGACGTGGCGGCGGCGTAGAAG
AACCTCTGCGATGGGTGCCTGTTGTTCGGGGACACCAAGGAACCCGCCGC
TGCCTCGCTGACGATCAGG
BO08451.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7103-PA | 978 | Pvf1-RA | 75..975 | 919..19 | 4436 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RB | 1804 | CG7103-RB | 310..1210 | 919..19 | 4464 | 99.7 | Minus |
Pvf1-RA | 1896 | CG7103-RA | 402..1302 | 919..19 | 4464 | 99.7 | Minus |
Pvf1-RC | 2783 | CG7103-RC | 402..1212 | 919..109 | 4014 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:07:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841120 | 599..109 | 2455 | 100 | Minus |
X | 23542271 | X | 18838129..18838342 | 919..706 | 1029 | 98.6 | Minus |
X | 23542271 | X | 18842218..18842307 | 108..19 | 450 | 100 | Minus |
X | 23542271 | X | 18840381..18840460 | 706..627 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 00:07:58 has no hits.
BO08451.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:30 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-PA | 75..978 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:20 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7103-PA | 75..978 | 16..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:40:49 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 402..1302 | 19..919 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 02:00:02 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 402..1302 | 19..919 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 02:00:02 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18838129..18838342 | 706..919 | 98 | -> | Minus |
X | 18840382..18840460 | 627..705 | 100 | -> | Minus |
X | 18840532..18840558 | 600..626 | 100 | -> | Minus |
X | 18840630..18841120 | 109..599 | 100 | -> | Minus |
X | 18842218..18842307 | 19..108 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:40:49 Download gff for
BO08451.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732162..18732375 | 706..919 | 98 | -> | Minus |
arm_X | 18734415..18734493 | 627..705 | 100 | -> | Minus |
arm_X | 18734565..18734591 | 600..626 | 100 | -> | Minus |
arm_X | 18734663..18735153 | 109..599 | 100 | -> | Minus |
arm_X | 18736251..18736340 | 19..108 | 100 | | Minus |
BO08451.5prime Sequence
908 bp (789 high quality bases) assembled on 2006-01-06
> BO08451.5prime
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCCACGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTG
BO08451.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7103-PA | 978 | Pvf1-RA | 1..892 | 17..908 | 4410 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 12:07:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RA | 1896 | CG7103-RA | 327..1219 | 16..908 | 4435 | 99.8 | Plus |
Pvf1-RC | 2783 | CG7103-RC | 327..1212 | 16..901 | 4400 | 99.8 | Plus |
Pvf1-RB | 1804 | CG7103-RB | 266..1127 | 47..908 | 4280 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 12:07:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841120 | 411..901 | 2425 | 99.6 | Plus |
X | 23542271 | X | 18838054..18838342 | 16..304 | 1445 | 100 | Plus |
X | 23542271 | X | 18840381..18840460 | 304..383 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 12:07:23 has no hits.
BO08451.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:31 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:22 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7103-PA | 1..892 | 17..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 05:57:01 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 321..1219 | 9..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:02:44 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 321..1219 | 9..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:02:44 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18840630..18841123 | 411..908 | 98 | | Plus |
X | 18838048..18838342 | 9..304 | 98 | -> | Plus |
X | 18840382..18840460 | 305..383 | 100 | -> | Plus |
X | 18840532..18840558 | 384..410 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 05:57:01 Download gff for
BO08451.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732081..18732375 | 9..304 | 98 | -> | Plus |
arm_X | 18734415..18734493 | 305..383 | 100 | -> | Plus |
arm_X | 18734565..18734591 | 384..410 | 100 | -> | Plus |
arm_X | 18734663..18735156 | 411..908 | 98 | | Plus |
BO08451.complete Sequence
1009 bp (1009 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631199
> BO08451.complete
GAAGTTATCAGTCGACATGGCCATGTCCCGAATCCGAATTCTGAAGCCCA
TGCAGCATCCATTGCTCATCCTGCCAGTGCTCCTTCTCGTCCTGATCGTC
AGCGAGGCAGCGGCGGGCTCCTTGGTGTCCCCGAACAACAGGCAACCATC
GCAGAGGTTCTTCTACGCCGCCGCCACGTCCTCCTCCTCCACGCAGACCA
AGGTGCGCCTGCTCCGCCAGGCGGACGATCCCAGTGCGGCGCCGGGTGCA
CTGGAGGGCAGCTGCTGCCAAGGAGCAGCTGCGGAAGCCGGAACACCATT
GACGCTCCCACTGTCCGTGTCCGCTGAGCTGACCAACGTGACCGCCGACT
ACGATGTGTCCGGCGAGATGCCCTCCTCCAAGGAAAACTTTAAGCGCAGC
ATCATGAAATCAACCGTGAGGAATGCAACGCCGGCGAGCTGCTCCCCGCA
ACCGACGATCGTGGAGCTGAAGCCACCGGCGGAGGACGAGGCGAACTACT
ACTATATGCCCGCGTGCACGCGGATCAGCCGATGCAATGGATGCTGCGGA
TCCACGCTGATCTCCTGCCAGCCAACGGAGGTAGAGCAGGTGCAGCTGCG
GGTGCGCAAGGTGGACCGGGCGGCCACCAGCGGACGCAGACCGTTCACCA
TCATCACCGTGGAGCAGCATACGCAGTGCCGCTGCGATTGTCGCACGAAG
GCGGAGGACTGCAACGTGTACCAGTCGTATCGCAAGGATTTGTGCCGCTG
CGAGTGCCACAACACGGATGCCCGGGACAAGTGCCTGGAGCAGGCCGAGA
ACAAGTATTGGGTGGACGACAATTGCACCTGCGTTTGCCGCTACAACCAG
AGCTGCACCACCGGCACCGTCTTCGATGAGACGCAGTGCAAGTGCACCGA
CCCGGCTGCACCCATCGATGTCTTGGATCGCAAACGCTTCATTGTCCAGG
CGGTACAGGTGGATCCCGATAACACCACCCTGTACAGTGTTGCAAGCTTT
CTAGACCAT
BO08451.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:56:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RA | 978 | CG7103-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Pvf1-RB | 945 | CG7103-PB | 1..942 | 50..991 | 4710 | 100 | Plus |
Pvf1-RC | 903 | CG7103-PC | 1..885 | 17..901 | 4425 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-RA | 1896 | CG7103-RA | 327..1302 | 16..991 | 4880 | 100 | Plus |
Pvf1-RB | 1804 | CG7103-RB | 266..1210 | 47..991 | 4725 | 100 | Plus |
Pvf1-RC | 2783 | CG7103-RC | 327..1212 | 16..901 | 4430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:56:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18840630..18841120 | 411..901 | 2455 | 100 | Plus |
X | 23542271 | X | 18838054..18838342 | 16..304 | 1445 | 100 | Plus |
X | 23542271 | X | 18842218..18842307 | 902..991 | 450 | 100 | Plus |
X | 23542271 | X | 18840381..18840460 | 304..383 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:56:35 has no hits.
BO08451.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:15 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 1..978 | 17..994 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:09 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 299..1280 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:48:14 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 328..1302 | 17..993 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:15 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 299..1280 | 9..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:07:18 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pvf1-RA | 328..1302 | 17..993 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:07:18 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18838055..18838342 | 17..304 | 100 | -> | Plus |
X | 18840382..18840460 | 305..383 | 100 | -> | Plus |
X | 18840532..18840558 | 384..410 | 100 | -> | Plus |
X | 18840630..18841120 | 411..901 | 100 | -> | Plus |
X | 18842218..18842307 | 902..993 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:48:14 Download gff for
BO08451.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 18732088..18732375 | 17..304 | 100 | -> | Plus |
arm_X | 18734415..18734493 | 305..383 | 100 | -> | Plus |
arm_X | 18734565..18734591 | 384..410 | 100 | -> | Plus |
arm_X | 18734663..18735153 | 411..901 | 100 | -> | Plus |
arm_X | 18736251..18736340 | 902..993 | 97 | | Plus |
BO08451.pep Sequence
Translation from 16 to 1009
> BO08451.pep
MAMSRIRILKPMQHPLLILPVLLLVLIVSEAAAGSLVSPNNRQPSQRFFY
AAATSSSSTQTKVRLLRQADDPSAAPGALEGSCCQGAAAEAGTPLTLPLS
VSAELTNVTADYDVSGEMPSSKENFKRSIMKSTVRNATPASCSPQPTIVE
LKPPAEDEANYYYMPACTRISRCNGCCGSTLISCQPTEVEQVQLRVRKVD
RAATSGRRPFTIITVEQHTQCRCDCRTKAEDCNVYQSYRKDLCRCECHNT
DARDKCLEQAENKYWVDDNCTCVCRYNQSCTTGTVFDETQCKCTDPAAPI
DVLDRKRFIVQAVQVDPDNTTLYSVASFLDH
BO08451.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pvf1-PA | 325 | CG7103-PA | 1..325 | 1..325 | 1722 | 100 | Plus |
Pvf1-PB | 314 | CG7103-PB | 1..314 | 12..325 | 1670 | 100 | Plus |
Pvf1-PC | 300 | CG7103-PC | 1..295 | 1..295 | 1571 | 100 | Plus |