Clone Sequence Records
BO08452.3prime Sequence
805 bp (788 high quality bases) assembled on 2006-01-06
> BO08452.3prime
ATGGTCTAGAAAGCTTGCGCGCATGCGGTATGTGTTCGACTCCTGAATTT
GAGACAATTCGCCCTTGAAATTAATGTCGATGACGAAGTCCAGGTCACGG
TTGTTCCGCTCGTTGGGCTTCATCTGGAACGTGCCAGTGATCTCCTCGTT
CTTCTTTGCCGTCATGTGGTCATCGAGGTAGAACACGGTTTGCTTCCAAT
GCGTGTATGTGGAGTCTGGTGACGTACTGAACCCAAGACGCTTGTGGCAC
TTGGTGAACTCTATATTAAAGTAGGTGACTAATGCCTGCACGAAGTCGTT
GCGCTTGATGCATAGGCTGAACTTGGACGAGAAGTTAAGATCGGCCTTTT
GCACGGTATACAGATCCACCTCCTTGACCATGCAAGATGTGGATACCACT
TGCTTGGGATCGACCACGTCGACCAGTGGCTCGGTCACGGCCACCTTACG
AATGCAGCTCATGTCGAAGCCGTAGACATCGTCCCACCAGTTGATCTTCT
CGTCCTTGTACTGTCTGTCCTCGATGGCCGTGATATACAGCGTGCCCCTA
TCTGGGAACATCATGCCGTCCTTCTTCAGCCACTTGTCCCGAGCGTACAA
CACTGTATCCAGCATGGATTCGTAGAACAGGCAGTAACCCATCCACTCGG
AAATAATAATGTCCACTCCCTCAATACCATTTGGAAGCTCAATCTCCTCA
ATCTTGCCCTTGACAACCGTGATTACATCCTGCAGATTGTTGTCAATGAC
CACTTGGCGGGCAAACTCAATGATGTTGGAGCAGTCGACGGCAATCCCCT
GAGCA
BO08452.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6554-PA | 1131 | Art1-RA | 342..1128 | 805..19 | 3910 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 11:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-RA | 1528 | CG6554-RA | 454..1240 | 805..19 | 3920 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 11:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10786769..10787388 | 19..638 | 3100 | 100 | Plus |
| 3R | 32079331 | 3R | 10787475..10787642 | 638..805 | 825 | 99.4 | Plus |
Blast to na_te.dros performed on 2015-02-11 11:44:57 has no hits.
BO08452.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:32 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-PA | 343..1131 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:24 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6554-PA | 343..1131 | 18..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 07:56:00 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 455..1240 | 19..804 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:56:37 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 455..1240 | 19..804 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:56:37 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10786769..10787387 | 19..637 | 100 | <- | Plus |
| 3R | 10787475..10787641 | 638..804 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 07:56:00 Download gff for
BO08452.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6612491..6613109 | 19..637 | 100 | <- | Plus |
| arm_3R | 6613197..6613363 | 638..804 | 99 | | Plus |
BO08452.5prime Sequence
844 bp (763 high quality bases) assembled on 2006-01-06
> BO08452.5prime
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTTAACTTCTCGTCCCAGTTC
BO08452.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 13:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6554-PA | 1131 | Art1-RA | 1..828 | 17..844 | 4115 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-RA | 1528 | CG6554-RA | 113..940 | 17..844 | 4125 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10787069..10787388 | 844..525 | 1585 | 99.7 | Minus |
| 3R | 32079331 | 3R | 10787773..10788049 | 295..19 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 10787475..10787706 | 525..294 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:02:35 has no hits.
BO08452.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 03:47:33 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 02:42:25 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6554-PA | 1..828 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 09:53:15 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..940 | 17..844 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:09:30 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..940 | 17..844 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:09:30 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10787773..10788054 | 12..295 | 99 | | Minus |
| 3R | 10787069..10787387 | 526..844 | 99 | <- | Minus |
| 3R | 10787475..10787704 | 296..525 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 09:53:15 Download gff for
BO08452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6612791..6613109 | 526..844 | 99 | <- | Minus |
| arm_3R | 6613197..6613426 | 296..525 | 100 | <- | Minus |
| arm_3R | 6613495..6613776 | 12..295 | 99 | | Minus |
BO08452.complete Sequence
1162 bp (1162 high quality bases) assembled on 2005-12-21
GenBank Submission: FJ631200
> BO08452.complete
GAAGTTATCAGTCGACATGGCCAGCACAGACATTCCCATGGAGGCAGCTG
TGGAATCGGCGACCGGCATCACGCCCAATTCAAATGCGAACTCAAACAAT
GTGGCGAAGAAGCTGCCCGCGGAGGGCTCCACCGGTGATAATCCCAATGC
CAACGCCGACGAGATGACGTCCCGCGACTATTACTTTGACTCCTATGCCC
ATTTCGGGATCCACGAGGAGATGCTCAAGGACGAAGTGCGCACCGTCACA
TACCGCAACGCCATGTACCACAACAAGCATCTGTTTCAGGGCAAGACCGT
ACTGGACGTGGGTTGCGGTACCGGCATTCTCTCCATGTTCGCTGCCAAAG
CCGGTGCTGCTCAGGTGATTGCCGTCGACTGCTCCAACATCATTGAGTTT
GCCCGCCAAGTGGTCATTGACAACAATCTGCAGGATGTAATCACGGTTGT
CAAGGGCAAGATTGAGGAGATTGAGCTTCCAAATGGTATTGAGGGAGTGG
ACATTATTATTTCCGAGTGGATGGGTTACTGCCTGTTCTACGAATCCATG
CTGGATACAGTGTTGTACGCTCGGGACAAGTGGCTGAAGAAGGACGGCAT
GATGTTCCCAGATAGGGGCACGCTGTATATCACGGCCATCGAGGACAGAC
AGTACAAGGACGAGAAGATCAACTGGTGGGACGATGTCTACGGCTTCGAC
ATGAGCTGCATTCGTAAGGTGGCCGTGACCGAGCCACTGGTCGACGTGGT
CGATCCCAAGCAAGTGGTATCCACATCTTGCATGGTCAAGGAGGTGGATC
TGTATACCGTGCAAAAGGCCGATCTTAACTTCTCGTCCAAGTTCAGCCTA
TGCATCAAGCGCAACGACTTCGTGCAGGCATTAGTCACCTACTTTAATAT
AGAGTTCACCAAGTGCCACAAGCGTCTTGGGTTCAGTACGTCACCAGACT
CCACATACACGCATTGGAAGCAAACCGTGTTCTACCTCGATGACCACATG
ACGGCAAAGAAGAACGAGGAGATCACTGGCACGTTCCAGATGAAGCCCAA
CGAGCGGAACAACCGTGACCTGGACTTCGTCATCGACATTAATTTCAAGG
GCGAATTGTCTCAAATTCAGGAGTCGAACACATACCGCATGCGCGCAAGC
TTTCTAGACCAT
BO08452.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-RA | 1131 | CG6554-PA | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-RA | 1528 | CG6554-RA | 113..1240 | 17..1144 | 5640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:08:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10786769..10787388 | 1144..525 | 3100 | 100 | Minus |
| 3R | 32079331 | 3R | 10787773..10788049 | 295..19 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 10787475..10787706 | 525..294 | 1160 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:08:44 has no hits.
BO08452.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:12:16 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 1..1131 | 17..1145 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:33:11 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 95..1222 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:48:15 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..1240 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:12:16 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 95..1222 | 17..1144 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:52:34 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Art1-RA | 113..1240 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:52:34 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10786767..10787387 | 526..1146 | 99 | <- | Minus |
| 3R | 10787475..10787704 | 296..525 | 100 | <- | Minus |
| 3R | 10787773..10788050 | 17..295 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:48:15 Download gff for
BO08452.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6612489..6613109 | 526..1146 | 99 | <- | Minus |
| arm_3R | 6613197..6613426 | 296..525 | 100 | <- | Minus |
| arm_3R | 6613495..6613772 | 17..295 | 99 | | Minus |
BO08452.pep Sequence
Translation from 16 to 1162
> BO08452.pep
MASTDIPMEAAVESATGITPNSNANSNNVAKKLPAEGSTGDNPNANADEM
TSRDYYFDSYAHFGIHEEMLKDEVRTVTYRNAMYHNKHLFQGKTVLDVGC
GTGILSMFAAKAGAAQVIAVDCSNIIEFARQVVIDNNLQDVITVVKGKIE
EIELPNGIEGVDIIISEWMGYCLFYESMLDTVLYARDKWLKKDGMMFPDR
GTLYITAIEDRQYKDEKINWWDDVYGFDMSCIRKVAVTEPLVDVVDPKQV
VSTSCMVKEVDLYTVQKADLNFSSKFSLCIKRNDFVQALVTYFNIEFTKC
HKRLGFSTSPDSTYTHWKQTVFYLDDHMTAKKNEEITGTFQMKPNERNNR
DLDFVIDINFKGELSQIQESNTYRMRASFLDH
BO08452.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:55:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Art1-PA | 376 | CG6554-PA | 1..376 | 1..376 | 1981 | 100 | Plus |
| Art2-PB | 355 | CG3675-PB | 10..335 | 36..362 | 768 | 46.4 | Plus |
| Art2-PA | 355 | CG3675-PA | 10..335 | 36..362 | 768 | 46.4 | Plus |
| Art6-PA | 341 | CG9927-PA | 19..337 | 56..373 | 705 | 40.6 | Plus |
| Art3-PB | 474 | CG6563-PB | 140..464 | 31..358 | 636 | 40.4 | Plus |
